HEADER HYDROLASE 19-DEC-14 4XDQ TITLE CRYSTAL STRUCTURE OF A GLYCOSIDE HYDROLASE FAMILY PROTEIN (RV0315 TITLE 2 ORTHOLOG) FROM MYCOBACTERIUM THERMORESTIBILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM THERMORESISTIBILE ATCC 19527; SOURCE 3 ORGANISM_TAXID: 1078020; SOURCE 4 GENE: KEK_10413; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: BG1861 KEYWDS STRUCTURAL GENOMICS, NATIONAL INSTITUTE FOR ALLERGY AND INFECTIOUS KEYWDS 2 DISEASES, NIAID, TUBERCULOSIS, ORTHOLOG, CALCIUM-BINDING, HYDROLASE, KEYWDS 3 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 27-SEP-23 4XDQ 1 SOURCE REMARK LINK REVDAT 1 14-JAN-15 4XDQ 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF A GLYCOSIDE HYDROLASE FAMILY PROTEIN JRNL TITL 2 (RV0315 ORTHOLOG) FROM MYCOBACTERIUM THERMORESTIBILE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 56708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2968 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1895 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.072 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4XDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59755 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3RQ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYTHA.18623.A.B2.PS02026 AT 20.8 MG/ML REMARK 280 AGAINST JCSG+ SCREEN CONDITION G5, 5 MM COCL2, 5 MM CDCL2, 5 MM REMARK 280 MGCL2, 5 MM NICL2, 0.1 M HEPES PH 7.5, 15% PEG 3350 SUPPLEMENTED REMARK 280 WITH 20 % EG AS CRYO, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.76500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.27500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.64750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.27500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.88250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.27500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.64750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.27500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.88250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 ASP A 6 REMARK 465 ALA A 7 REMARK 465 PRO A 8 REMARK 465 ALA A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 11 REMARK 465 PRO A 12 REMARK 465 ASP A 13 REMARK 465 THR A 14 REMARK 465 PRO A 15 REMARK 465 GLU A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 564 O HOH A 686 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 409 O HOH A 464 4555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 99 -159.71 -152.11 REMARK 500 LEU A 105 52.42 -92.22 REMARK 500 ASN A 121 34.15 -96.66 REMARK 500 TRP A 128 77.56 -150.35 REMARK 500 ASP A 154 -67.21 -156.21 REMARK 500 MET A 169 87.07 -153.03 REMARK 500 ARG A 240 -139.60 48.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 690 DISTANCE = 6.57 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 28 O REMARK 620 2 GLY A 79 O 90.6 REMARK 620 3 ASP A 254 O 76.3 90.5 REMARK 620 4 ASP A 254 OD1 151.5 93.9 75.5 REMARK 620 5 HOH A 408 O 90.7 175.8 93.7 86.9 REMARK 620 6 HOH A 435 O 78.7 96.3 154.1 128.6 80.0 REMARK 620 7 HOH A 439 O 137.5 86.3 146.0 71.0 90.0 59.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 154 OD1 REMARK 620 2 HOH A 404 O 79.1 REMARK 620 3 HOH A 409 O 97.2 99.8 REMARK 620 4 HOH A 457 O 94.7 172.7 84.8 REMARK 620 5 HOH A 464 O 154.1 82.3 68.3 104.7 REMARK 620 6 HOH A 732 O 89.8 93.5 166.0 82.5 109.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 216 OE1 REMARK 620 2 GLU A 216 OE2 54.6 REMARK 620 3 ASP A 254 OD2 23.2 77.8 REMARK 620 4 BEZ A 306 O1 25.2 79.4 4.6 REMARK 620 5 BEZ A 306 O2 23.4 77.7 3.9 1.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYTHA.18623.A RELATED DB: TARGETTRACK DBREF 4XDQ A 1 259 UNP G7CI90 G7CI90_MYCTH 20 278 SEQADV 4XDQ MET A -7 UNP G7CI90 INITIATING METHIONINE SEQADV 4XDQ ALA A -6 UNP G7CI90 EXPRESSION TAG SEQADV 4XDQ HIS A -5 UNP G7CI90 EXPRESSION TAG SEQADV 4XDQ HIS A -4 UNP G7CI90 EXPRESSION TAG SEQADV 4XDQ HIS A -3 UNP G7CI90 EXPRESSION TAG SEQADV 4XDQ HIS A -2 UNP G7CI90 EXPRESSION TAG SEQADV 4XDQ HIS A -1 UNP G7CI90 EXPRESSION TAG SEQADV 4XDQ HIS A 0 UNP G7CI90 EXPRESSION TAG SEQRES 1 A 267 MET ALA HIS HIS HIS HIS HIS HIS ALA GLN PRO VAL LEU SEQRES 2 A 267 ASP ALA PRO ALA PRO GLY PRO ASP THR PRO GLU ALA ALA SEQRES 3 A 267 SER GLY PRO GLY LEU LEU PHE ALA ASP GLU PHE ASP GLY SEQRES 4 A 267 PRO ALA GLY SER PRO PRO ASP PRO ALA LYS TRP PHE ILE SEQRES 5 A 267 VAL PRO GLU ARG GLU THR ILE ARG ASN PRO VAL GLU TRP SEQRES 6 A 267 ASP LYS PRO TYR ASN MET GLY ARG TYR VAL THR ASP GLN SEQRES 7 A 267 GLU HIS VAL PHE HIS ASP GLY ASN GLY ASN LEU VAL ILE SEQRES 8 A 267 ARG ALA THR ARG GLY PRO GLY ALA ASN ILE ARG GLU LYS SEQRES 9 A 267 TYR ALA SER ALA LYS ILE VAL GLY LEU TRP ARG GLY GLY SEQRES 10 A 267 VAL GLY THR THR TRP GLU ALA ARG VAL LYS LEU ASN CYS SEQRES 11 A 267 LEU THR ASP GLY ALA TRP PRO ALA PHE TRP LEU LEU ASN SEQRES 12 A 267 ASP ASP PRO VAL ARG GLY ALA GLU ILE ASP ILE PHE GLU SEQRES 13 A 267 TRP TYR GLY ASN ARG ASP TRP PRO SER GLY ALA THR VAL SEQRES 14 A 267 HIS ALA LYS LEU ASP GLY THR MET PHE GLN THR GLN ASN SEQRES 15 A 267 TYR PRO VAL ASP SER ALA TRP HIS THR TRP ARG MET THR SEQRES 16 A 267 TRP LEU PRO SER GLY MET TYR PHE TRP GLN ASP TYR GLU SEQRES 17 A 267 PRO GLY LYS GLU PRO PHE PHE THR VAL LEU ALA ASN SER SEQRES 18 A 267 LEU PRO GLU TRP PRO PHE ASN ASP PRO GLY TYR THR MET SEQRES 19 A 267 VAL PRO VAL PHE ASN ILE ALA VAL GLY GLY SER GLY GLY SEQRES 20 A 267 ARG GLU PRO ALA GLY GLY SER TYR PRO ALA ASP MET ILE SEQRES 21 A 267 ILE ASP TRP ILE ARG VAL PHE HET CA A 301 1 HET CD A 302 1 HET MG A 303 1 HET CL A 304 1 HET CL A 305 1 HET BEZ A 306 9 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HETNAM CA CALCIUM ION HETNAM CD CADMIUM ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM BEZ BENZOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA CA 2+ FORMUL 3 CD CD 2+ FORMUL 4 MG MG 2+ FORMUL 5 CL 2(CL 1-) FORMUL 7 BEZ C7 H6 O2 FORMUL 8 EDO 3(C2 H6 O2) FORMUL 11 HOH *340(H2 O) HELIX 1 AA1 VAL A 55 MET A 63 5 9 HELIX 2 AA2 ASN A 92 LYS A 96 1 5 HELIX 3 AA3 ASN A 212 LEU A 214 5 3 HELIX 4 AA4 TRP A 217 ASP A 221 5 5 HELIX 5 AA5 GLY A 235 ARG A 240 1 6 SHEET 1 AA1 4 PHE A 25 ASP A 27 0 SHEET 2 AA1 4 ALA A 249 PHE A 259 -1 O VAL A 258 N PHE A 25 SHEET 3 AA1 4 LEU A 81 ARG A 87 -1 N LEU A 81 O ILE A 253 SHEET 4 AA1 4 VAL A 73 HIS A 75 -1 N PHE A 74 O VAL A 82 SHEET 1 AA2 8 ARG A 65 TYR A 66 0 SHEET 2 AA2 8 TYR A 97 SER A 99 1 O TYR A 97 N ARG A 65 SHEET 3 AA2 8 LEU A 81 ARG A 87 -1 N THR A 86 O ALA A 98 SHEET 4 AA2 8 ALA A 249 PHE A 259 -1 O ILE A 253 N LEU A 81 SHEET 5 AA2 8 THR A 113 ASN A 121 -1 N GLU A 115 O ARG A 257 SHEET 6 AA2 8 HIS A 182 LEU A 189 -1 O MET A 186 N TRP A 114 SHEET 7 AA2 8 GLY A 192 GLN A 197 -1 O GLY A 192 N LEU A 189 SHEET 8 AA2 8 PHE A 207 LEU A 210 -1 O VAL A 209 N MET A 193 SHEET 1 AA3 4 TRP A 42 ILE A 44 0 SHEET 2 AA3 4 LYS A 101 GLY A 104 -1 O VAL A 103 N PHE A 43 SHEET 3 AA3 4 THR A 225 VAL A 234 -1 O PRO A 228 N GLY A 104 SHEET 4 AA3 4 GLY A 108 GLY A 109 -1 N GLY A 108 O MET A 226 SHEET 1 AA4 7 TRP A 42 ILE A 44 0 SHEET 2 AA4 7 LYS A 101 GLY A 104 -1 O VAL A 103 N PHE A 43 SHEET 3 AA4 7 THR A 225 VAL A 234 -1 O PRO A 228 N GLY A 104 SHEET 4 AA4 7 ALA A 127 ASN A 135 -1 N TRP A 132 O VAL A 229 SHEET 5 AA4 7 ALA A 142 GLU A 148 -1 O ILE A 144 N LEU A 133 SHEET 6 AA4 7 GLY A 158 HIS A 162 -1 O HIS A 162 N GLU A 143 SHEET 7 AA4 7 PHE A 170 ASN A 174 -1 O GLN A 171 N VAL A 161 LINK O GLU A 28 CA CA A 301 1555 1555 2.34 LINK O GLY A 79 CA CA A 301 1555 1555 2.29 LINK OD1 ASP A 154 MG MG A 303 1555 1555 2.13 LINK OE1 GLU A 216 CD CD A 302 1555 6555 2.43 LINK OE2 GLU A 216 CD CD A 302 1555 6555 2.30 LINK O ASP A 254 CA CA A 301 1555 1555 2.35 LINK OD1 ASP A 254 CA CA A 301 1555 1555 2.40 LINK OD2 ASP A 254 CD CD A 302 1555 1555 2.08 LINK CA CA A 301 O HOH A 408 1555 1555 2.33 LINK CA CA A 301 O HOH A 435 1555 1555 2.41 LINK CA CA A 301 O HOH A 439 1555 1555 2.50 LINK CD CD A 302 O1 BEZ A 306 1555 1555 2.58 LINK CD CD A 302 O2 BEZ A 306 1555 1555 2.37 LINK MG MG A 303 O HOH A 404 1555 1555 1.94 LINK MG MG A 303 O HOH A 409 1555 1555 1.93 LINK MG MG A 303 O HOH A 457 1555 1555 2.30 LINK MG MG A 303 O HOH A 464 1555 4555 1.92 LINK MG MG A 303 O HOH A 732 1555 1555 2.12 CISPEP 1 TYR A 247 PRO A 248 0 5.16 SITE 1 AC1 6 GLU A 28 GLY A 79 ASP A 254 HOH A 408 SITE 2 AC1 6 HOH A 435 HOH A 439 SITE 1 AC2 4 GLU A 216 ASP A 254 CL A 305 BEZ A 306 SITE 1 AC3 6 ASP A 154 HOH A 404 HOH A 409 HOH A 457 SITE 2 AC3 6 HOH A 464 HOH A 732 SITE 1 AC4 3 LYS A 59 ARG A 107 ASP A 136 SITE 1 AC5 4 GLU A 216 ASP A 254 CD A 302 BEZ A 306 SITE 1 AC6 9 ARG A 117 ARG A 140 GLU A 216 ASP A 254 SITE 2 AC6 9 TRP A 255 CD A 302 CL A 305 HOH A 422 SITE 3 AC6 9 HOH A 440 SITE 1 AC7 6 TRP A 128 ALA A 130 TRP A 132 GLU A 143 SITE 2 AC7 6 GLU A 148 HOH A 659 SITE 1 AC8 6 TRP A 149 TYR A 150 TRP A 155 PRO A 156 SITE 2 AC8 6 SER A 157 HOH A 717 SITE 1 AC9 4 ARG A 65 HOH A 552 HOH A 618 HOH A 633 CRYST1 74.550 74.550 95.530 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010468 0.00000