HEADER BLOOD CLOTTING 22-DEC-14 4XE4 TITLE COAGULATION FACTOR XII PROTEASE DOMAIN CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XII; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAGEMAN FACTOR,HAF; COMPND 5 EC: 3.4.21.38; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F12; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SCHNEIDER 2 (S2) CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMT-PURO KEYWDS FACTOR XII, ZYMOGENS, CATALYTIC DOMAIN, ACTIVE SITE, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR M.PATHAK,P.WILMANN,J.AWFORD,C.LI,P.M.FISHER,I.DREVENY,L.V.DEKKER, AUTHOR 2 J.EMSLEY REVDAT 5 10-JAN-24 4XE4 1 REMARK HETSYN REVDAT 4 29-JUL-20 4XE4 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 28-OCT-15 4XE4 1 JRNL REVDAT 2 15-APR-15 4XE4 1 JRNL REVDAT 1 04-FEB-15 4XE4 0 JRNL AUTH M.PATHAK,P.WILMANN,J.AWFORD,C.LI,B.K.HAMAD,P.M.FISCHER, JRNL AUTH 2 I.DREVENY,L.V.DEKKER,J.EMSLEY JRNL TITL COAGULATION FACTOR XII PROTEASE DOMAIN CRYSTAL STRUCTURE. JRNL REF J.THROMB.HAEMOST. V. 13 580 2015 JRNL REFN ESSN 1538-7836 JRNL PMID 25604127 JRNL DOI 10.1111/JTH.12849 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 14815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 723 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1110 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.64 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1765 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.28000 REMARK 3 B22 (A**2) : 1.28000 REMARK 3 B33 (A**2) : -4.15000 REMARK 3 B12 (A**2) : 1.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.275 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.772 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1866 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1699 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2545 ; 1.963 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3876 ; 0.964 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 231 ; 8.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;38.917 ;23.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 259 ;22.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.486 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 282 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2111 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 431 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-DEC-14. REMARK 100 THE DEPOSITION ID IS D_1000205513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 39.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XDE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5,1.6M AMMONIUM REMARK 280 SULPHATE, 2%(W/V) PEG1000., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.67400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.33700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 12.33700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.67400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 808 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 872 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 354 REMARK 465 VAL A 355 REMARK 465 GLY A 356 REMARK 465 GLY A 357 REMARK 465 LEU A 358 REMARK 465 GLY A 535 REMARK 465 GLY A 536 REMARK 465 THR A 537 REMARK 465 GLY A 570 REMARK 465 CYS A 571 REMARK 465 GLY A 572 REMARK 465 ASP A 573 REMARK 465 HIS A 597 REMARK 465 HIS A 598 REMARK 465 THR A 599 REMARK 465 GLY A 600 REMARK 465 THR A 601 REMARK 465 ARG A 602 REMARK 465 HIS A 603 REMARK 465 HIS A 604 REMARK 465 HIS A 605 REMARK 465 HIS A 606 REMARK 465 HIS A 607 REMARK 465 HIS A 608 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 398 CG CD REMARK 480 GLU A 556 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 460 NE2 GLN A 464 1.91 REMARK 500 O PRO A 399 OH TYR A 428 1.93 REMARK 500 O SER A 522 O HOH A 876 2.11 REMARK 500 N HIS A 441 O HOH A 836 2.14 REMARK 500 OE2 GLU A 477 OG SER A 509 2.17 REMARK 500 O PRO A 525 O HOH A 875 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 429 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 LEU A 443 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 CYS A 456 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 PRO A 475 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 ALA A 515 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ALA A 539 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 LYS A 576 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 397 1.08 -63.65 REMARK 500 CYS A 417 148.09 -177.68 REMARK 500 SER A 427 159.13 178.69 REMARK 500 PRO A 436 -8.09 -53.48 REMARK 500 HIS A 441 61.40 -109.71 REMARK 500 GLU A 450 122.21 -39.96 REMARK 500 ASP A 453 17.87 80.48 REMARK 500 ALA A 472 35.65 -90.31 REMARK 500 SER A 476 -171.68 -65.60 REMARK 500 TYR A 496 64.61 -102.05 REMARK 500 VAL A 518 -76.03 -95.15 REMARK 500 HIS A 519 -23.26 -140.13 REMARK 500 SER A 521 4.05 -62.42 REMARK 500 LEU A 533 -59.24 68.51 REMARK 500 ALA A 539 10.85 -147.92 REMARK 500 ASP A 552 -60.68 -125.43 REMARK 500 GLN A 553 3.93 58.51 REMARK 500 ASN A 575 68.53 -161.74 REMARK 500 LYS A 576 153.99 176.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 872 DISTANCE = 5.86 ANGSTROMS DBREF 4XE4 A 354 596 UNP P00748 FA12_HUMAN 373 615 SEQADV 4XE4 SER A 467 UNP P00748 CYS 486 ENGINEERED MUTATION SEQADV 4XE4 HIS A 597 UNP P00748 EXPRESSION TAG SEQADV 4XE4 HIS A 598 UNP P00748 EXPRESSION TAG SEQADV 4XE4 THR A 599 UNP P00748 EXPRESSION TAG SEQADV 4XE4 GLY A 600 UNP P00748 EXPRESSION TAG SEQADV 4XE4 THR A 601 UNP P00748 EXPRESSION TAG SEQADV 4XE4 ARG A 602 UNP P00748 EXPRESSION TAG SEQADV 4XE4 HIS A 603 UNP P00748 EXPRESSION TAG SEQADV 4XE4 HIS A 604 UNP P00748 EXPRESSION TAG SEQADV 4XE4 HIS A 605 UNP P00748 EXPRESSION TAG SEQADV 4XE4 HIS A 606 UNP P00748 EXPRESSION TAG SEQADV 4XE4 HIS A 607 UNP P00748 EXPRESSION TAG SEQADV 4XE4 HIS A 608 UNP P00748 EXPRESSION TAG SEQRES 1 A 255 VAL VAL GLY GLY LEU VAL ALA LEU ARG GLY ALA HIS PRO SEQRES 2 A 255 TYR ILE ALA ALA LEU TYR TRP GLY HIS SER PHE CYS ALA SEQRES 3 A 255 GLY SER LEU ILE ALA PRO CYS TRP VAL LEU THR ALA ALA SEQRES 4 A 255 HIS CYS LEU GLN ASP ARG PRO ALA PRO GLU ASP LEU THR SEQRES 5 A 255 VAL VAL LEU GLY GLN GLU ARG ARG ASN HIS SER CYS GLU SEQRES 6 A 255 PRO CYS GLN THR LEU ALA VAL ARG SER TYR ARG LEU HIS SEQRES 7 A 255 GLU ALA PHE SER PRO VAL SER TYR GLN HIS ASP LEU ALA SEQRES 8 A 255 LEU LEU ARG LEU GLN GLU ASP ALA ASP GLY SER CYS ALA SEQRES 9 A 255 LEU LEU SER PRO TYR VAL GLN PRO VAL SER LEU PRO SER SEQRES 10 A 255 GLY ALA ALA ARG PRO SER GLU THR THR LEU CYS GLN VAL SEQRES 11 A 255 ALA GLY TRP GLY HIS GLN PHE GLU GLY ALA GLU GLU TYR SEQRES 12 A 255 ALA SER PHE LEU GLN GLU ALA GLN VAL PRO PHE LEU SER SEQRES 13 A 255 LEU GLU ARG CYS SER ALA PRO ASP VAL HIS GLY SER SER SEQRES 14 A 255 ILE LEU PRO GLY MET LEU CYS ALA GLY PHE LEU GLU GLY SEQRES 15 A 255 GLY THR ASP ALA CYS GLN GLY ASP SER GLY GLY PRO LEU SEQRES 16 A 255 VAL CYS GLU ASP GLN ALA ALA GLU ARG ARG LEU THR LEU SEQRES 17 A 255 GLN GLY ILE ILE SER TRP GLY SER GLY CYS GLY ASP ARG SEQRES 18 A 255 ASN LYS PRO GLY VAL TYR THR ASP VAL ALA TYR TYR LEU SEQRES 19 A 255 ALA TRP ILE ARG GLU HIS THR VAL SER HIS HIS THR GLY SEQRES 20 A 255 THR ARG HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG B 3 14 HET GOL A 704 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *78(H2 O) HELIX 1 AA1 ALA A 391 LEU A 395 5 5 HELIX 2 AA2 ALA A 493 ALA A 497 5 5 HELIX 3 AA3 SER A 509 ALA A 515 1 7 HELIX 4 AA4 HIS A 519 ILE A 523 5 5 HELIX 5 AA5 TYR A 586 VAL A 595 1 10 SHEET 1 AA1 7 ILE A 368 TRP A 373 0 SHEET 2 AA1 7 SER A 376 ALA A 384 -1 O SER A 376 N TRP A 373 SHEET 3 AA1 7 TRP A 387 THR A 390 -1 O LEU A 389 N SER A 381 SHEET 4 AA1 7 ALA A 444 LEU A 448 -1 O LEU A 446 N VAL A 388 SHEET 5 AA1 7 GLN A 421 LEU A 430 -1 N SER A 427 O ARG A 447 SHEET 6 AA1 7 THR A 405 LEU A 408 -1 N VAL A 406 O LEU A 423 SHEET 7 AA1 7 ILE A 368 TRP A 373 -1 N TYR A 372 O THR A 405 SHEET 1 AA2 7 LEU A 480 GLY A 485 0 SHEET 2 AA2 7 GLN A 501 LEU A 508 -1 O ALA A 503 N VAL A 483 SHEET 3 AA2 7 MET A 527 ALA A 530 -1 O CYS A 529 N LEU A 508 SHEET 4 AA2 7 GLY A 578 ASP A 582 -1 O TYR A 580 N LEU A 528 SHEET 5 AA2 7 LEU A 559 TRP A 567 -1 N TRP A 567 O VAL A 579 SHEET 6 AA2 7 PRO A 547 GLU A 551 -1 N CYS A 550 O THR A 560 SHEET 7 AA2 7 LEU A 480 GLY A 485 -1 N GLN A 482 O VAL A 549 SSBOND 1 CYS A 378 CYS A 394 1555 1555 2.03 SSBOND 2 CYS A 386 CYS A 456 1555 1555 2.08 SSBOND 3 CYS A 417 CYS A 420 1555 1555 2.12 SSBOND 4 CYS A 481 CYS A 550 1555 1555 2.05 SSBOND 5 CYS A 513 CYS A 529 1555 1555 2.06 LINK ND2 ASN A 414 C1 NAG B 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 NAG B 3 1555 1555 1.43 CRYST1 137.060 137.060 37.011 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007296 0.004212 0.000000 0.00000 SCALE2 0.000000 0.008425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027019 0.00000