HEADER TRANSPORT PROTEIN 26-DEC-14 4XFE TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 PSEUDOMONAS PUTIDA F1 (PPUT_1203), TARGET EFI-500184, WITH BOUND D- TITLE 3 GLUCURONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER SUBUNIT DCTP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA ND6; SOURCE 3 ORGANISM_TAXID: 231023; SOURCE 4 GENE: YSA_07416; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH,S.R.WASSERMAN, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA,S.CHOWDHURY,J.LAFLEUR,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 3 29-JUL-20 4XFE 1 COMPND REMARK HETNAM SITE REVDAT 2 07-OCT-15 4XFE 1 REMARK REVDAT 1 28-JAN-15 4XFE 0 JRNL AUTH M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH, JRNL AUTH 2 S.R.WASSERMAN,J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA, JRNL AUTH 3 S.CHOWDHURY,J.LAFLEUR,J.LOVE,R.D.SEIDEL,K.L.WHALEN, JRNL AUTH 4 J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING JRNL TITL 2 PROTEIN FROM PSEUDOMONAS PUTIDA F1 (PPUT_1203), TARGET JRNL TITL 3 EFI-500184, WITH BOUND D-GLUCURONATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 53200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5080 - 3.7325 0.90 2514 137 0.1747 0.1892 REMARK 3 2 3.7325 - 2.9639 0.97 2656 146 0.1551 0.1837 REMARK 3 3 2.9639 - 2.5896 0.98 2655 152 0.1555 0.1784 REMARK 3 4 2.5896 - 2.3530 0.99 2685 137 0.1451 0.1757 REMARK 3 5 2.3530 - 2.1844 0.99 2647 155 0.1345 0.1569 REMARK 3 6 2.1844 - 2.0557 1.00 2673 151 0.1314 0.1702 REMARK 3 7 2.0557 - 1.9527 1.00 2692 124 0.1356 0.1777 REMARK 3 8 1.9527 - 1.8678 1.00 2698 136 0.1410 0.1705 REMARK 3 9 1.8678 - 1.7959 1.00 2683 136 0.1384 0.1779 REMARK 3 10 1.7959 - 1.7339 1.00 2643 146 0.1453 0.1928 REMARK 3 11 1.7339 - 1.6797 1.00 2680 136 0.1417 0.1785 REMARK 3 12 1.6797 - 1.6317 1.00 2676 144 0.1464 0.1850 REMARK 3 13 1.6317 - 1.5888 1.00 2680 138 0.1480 0.1846 REMARK 3 14 1.5888 - 1.5500 1.00 2677 132 0.1611 0.2010 REMARK 3 15 1.5500 - 1.5148 1.00 2631 146 0.1792 0.2196 REMARK 3 16 1.5148 - 1.4825 1.00 2686 140 0.1827 0.1976 REMARK 3 17 1.4825 - 1.4529 1.00 2644 152 0.1993 0.2635 REMARK 3 18 1.4529 - 1.4255 1.00 2677 142 0.2115 0.2559 REMARK 3 19 1.4255 - 1.4000 1.00 2604 149 0.2149 0.2349 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2476 REMARK 3 ANGLE : 1.361 3350 REMARK 3 CHIRALITY : 0.073 373 REMARK 3 PLANARITY : 0.007 433 REMARK 3 DIHEDRAL : 13.043 925 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6724 26.3452 24.9431 REMARK 3 T TENSOR REMARK 3 T11: 0.0400 T22: 0.0461 REMARK 3 T33: 0.0473 T12: 0.0056 REMARK 3 T13: -0.0095 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.0595 L22: 0.0277 REMARK 3 L33: 0.0461 L12: 0.0229 REMARK 3 L13: -0.0530 L23: -0.0297 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.1234 S13: 0.0278 REMARK 3 S21: -0.0143 S22: 0.0091 S23: 0.0095 REMARK 3 S31: -0.0281 S32: -0.1027 S33: -0.0011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1974 11.6203 30.5875 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.0613 REMARK 3 T33: 0.0793 T12: -0.0212 REMARK 3 T13: 0.0060 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.0160 L22: 0.0402 REMARK 3 L33: 0.0155 L12: -0.0023 REMARK 3 L13: -0.0202 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: -0.1022 S12: -0.0012 S13: -0.0696 REMARK 3 S21: -0.0121 S22: 0.0381 S23: -0.0432 REMARK 3 S31: 0.0738 S32: -0.0047 S33: -0.0222 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0124 18.3067 41.5835 REMARK 3 T TENSOR REMARK 3 T11: 0.0377 T22: 0.0459 REMARK 3 T33: 0.0394 T12: 0.0038 REMARK 3 T13: -0.0068 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.1614 L22: 0.1398 REMARK 3 L33: 0.1383 L12: 0.0505 REMARK 3 L13: -0.1167 L23: 0.1111 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: 0.0070 S13: -0.0087 REMARK 3 S21: 0.0297 S22: 0.0208 S23: -0.0071 REMARK 3 S31: 0.0136 S32: 0.0625 S33: -0.0009 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8554 9.5348 52.4461 REMARK 3 T TENSOR REMARK 3 T11: 0.0771 T22: 0.0533 REMARK 3 T33: 0.0842 T12: -0.0095 REMARK 3 T13: 0.0070 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.4171 L22: 0.0787 REMARK 3 L33: 0.2666 L12: -0.0725 REMARK 3 L13: -0.1936 L23: -0.0245 REMARK 3 S TENSOR REMARK 3 S11: -0.1289 S12: -0.2468 S13: 0.0906 REMARK 3 S21: 0.1954 S22: -0.0415 S23: 0.0179 REMARK 3 S31: -0.0156 S32: 0.0612 S33: -0.0292 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1325 23.6885 41.7371 REMARK 3 T TENSOR REMARK 3 T11: 0.0346 T22: 0.0218 REMARK 3 T33: 0.0318 T12: -0.0014 REMARK 3 T13: 0.0088 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.1879 L22: 0.1404 REMARK 3 L33: 0.2610 L12: -0.0020 REMARK 3 L13: -0.0076 L23: -0.1224 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: 0.0304 S13: 0.0465 REMARK 3 S21: 0.0315 S22: 0.0090 S23: 0.0366 REMARK 3 S31: -0.0448 S32: -0.0114 S33: 0.0033 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.7394 17.8260 49.1145 REMARK 3 T TENSOR REMARK 3 T11: 0.0620 T22: 0.1047 REMARK 3 T33: 0.0702 T12: -0.0040 REMARK 3 T13: -0.0125 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.0404 L22: -0.0017 REMARK 3 L33: 0.0547 L12: 0.0055 REMARK 3 L13: -0.0103 L23: -0.0201 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.0585 S13: -0.0114 REMARK 3 S21: 0.0191 S22: -0.0517 S23: -0.1124 REMARK 3 S31: -0.0186 S32: 0.1612 S33: 0.0070 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XFE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53215 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 59.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (60.0 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 10 MM D-GLUCURONATE); RESERVOIR (MCSG2(D3), 0.2M REMARK 280 LITHIUM SULFATE, 0.1 M CAPS PH 10.5, 2.0 M AMMONIUM SULFATE); REMARK 280 CRYOPROTECTION (80% RESERVOIR, 20% GLYCEROL), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.00050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.52700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.00050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.52700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 629 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 637 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 PHE A 3 REMARK 465 LYS A 4 REMARK 465 ARG A 5 REMARK 465 LYS A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 PHE A 14 REMARK 465 ALA A 15 REMARK 465 PHE A 16 REMARK 465 SER A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 MSE A 20 REMARK 465 PRO A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 GLY A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 152 HD1 HIS A 219 1.11 REMARK 500 H ARG A 110 HD1 HIS A 114 1.30 REMARK 500 HD1 HIS A 33 HE2 HIS A 217 1.34 REMARK 500 O THR A 229 HZ1 LYS A 294 1.58 REMARK 500 O HOH A 628 O HOH A 633 2.11 REMARK 500 O HOH A 502 O HOH A 562 2.13 REMARK 500 O HOH A 633 O HOH A 644 2.19 REMARK 500 O GLN A 330 O HOH A 501 2.19 REMARK 500 O HOH A 623 O HOH A 634 2.19 REMARK 500 O HOH A 712 O HOH A 778 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 209 -179.41 -173.06 REMARK 500 GLN A 323 -97.37 -138.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510184 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4XEQ RELATED DB: PDB REMARK 900 RELATED ID: 4XF5 RELATED DB: PDB DBREF 4XFE A 2 323 UNP I3UZ52 I3UZ52_PSEPU 2 323 SEQADV 4XFE MSE A 1 UNP I3UZ52 INITIATING METHIONINE SEQADV 4XFE ALA A 324 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE GLU A 325 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE ASN A 326 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE LEU A 327 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE TYR A 328 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE PHE A 329 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE GLN A 330 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE GLY A 331 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE HIS A 332 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE HIS A 333 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE HIS A 334 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE HIS A 335 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE HIS A 336 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE HIS A 337 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE HIS A 338 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE HIS A 339 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE HIS A 340 UNP I3UZ52 EXPRESSION TAG SEQADV 4XFE HIS A 341 UNP I3UZ52 EXPRESSION TAG SEQRES 1 A 341 MSE THR PHE LYS ARG LYS LEU LEU LEU ALA VAL LEU PRO SEQRES 2 A 341 PHE ALA PHE SER VAL ALA MSE PRO ALA SER ALA LEU ASP SEQRES 3 A 341 ILE LYS PHE ALA GLU ILE HIS PRO ALA GLY TYR PRO THR SEQRES 4 A 341 VAL VAL ALA GLU GLN ASN MSE GLY LYS LYS LEU GLU GLN SEQRES 5 A 341 ALA SER ASN GLY ASP ILE THR PHE LYS MSE PHE ALA GLY SEQRES 6 A 341 GLY VAL LEU GLY SER GLU LYS GLU VAL ILE GLU GLN ALA SEQRES 7 A 341 GLN ILE GLY ALA VAL GLN MSE THR ARG VAL SER LEU GLY SEQRES 8 A 341 ILE VAL GLY PRO VAL VAL PRO ASP VAL ASN VAL PHE ASN SEQRES 9 A 341 MSE PRO PHE VAL PHE ARG ASP HIS ASP HIS MSE ARG LYS SEQRES 10 A 341 ILE ILE ASP GLY GLU ILE GLY GLN GLU ILE LEU ASP LYS SEQRES 11 A 341 ILE THR ASN SER ASP PHE ASN LEU VAL ALA LEU ALA TRP SEQRES 12 A 341 MSE ASP GLY GLY SER ARG SER ILE TYR THR LYS LYS PRO SEQRES 13 A 341 VAL ARG SER LEU GLU ASP LEU LYS GLY MSE LYS ILE ARG SEQRES 14 A 341 VAL GLN GLY ASN PRO LEU PHE ILE ASP MSE MSE ASN ALA SEQRES 15 A 341 MSE GLY GLY ASN GLY ILE ALA MSE ASP THR GLY GLU ILE SEQRES 16 A 341 PHE SER ALA LEU GLN THR GLY VAL ILE ASP GLY ALA GLU SEQRES 17 A 341 ASN ASN PRO PRO THR LEU LEU GLU HIS ASN HIS PHE GLN SEQRES 18 A 341 SER ALA LYS TYR TYR THR LEU THR GLY HIS LEU ILE LEU SEQRES 19 A 341 PRO GLU PRO VAL VAL MSE SER LYS THR THR TRP ASN LYS SEQRES 20 A 341 LEU THR PRO GLU GLN GLN VAL LEU VAL LYS LYS VAL ALA SEQRES 21 A 341 ARG GLU ALA GLN MSE GLU GLU ARG ALA LEU TRP ASP ALA SEQRES 22 A 341 LYS SER ALA ALA SER GLU GLU LYS LEU LYS ALA ALA GLY SEQRES 23 A 341 VAL GLU PHE ILE THR VAL ASP LYS LYS PRO PHE TYR ASP SEQRES 24 A 341 ALA THR ALA SER VAL ARG GLU LYS TYR GLY ALA GLN TYR SEQRES 25 A 341 ALA ASP LEU MSE LYS ARG ILE ASP ALA VAL GLN ALA GLU SEQRES 26 A 341 ASN LEU TYR PHE GLN GLY HIS HIS HIS HIS HIS HIS HIS SEQRES 27 A 341 HIS HIS HIS MODRES 4XFE MSE A 46 MET MODIFIED RESIDUE MODRES 4XFE MSE A 62 MET MODIFIED RESIDUE MODRES 4XFE MSE A 85 MET MODIFIED RESIDUE MODRES 4XFE MSE A 105 MET MODIFIED RESIDUE MODRES 4XFE MSE A 115 MET MODIFIED RESIDUE MODRES 4XFE MSE A 144 MET MODIFIED RESIDUE MODRES 4XFE MSE A 166 MET MODIFIED RESIDUE MODRES 4XFE MSE A 179 MET MODIFIED RESIDUE MODRES 4XFE MSE A 180 MET MODIFIED RESIDUE MODRES 4XFE MSE A 183 MET MODIFIED RESIDUE MODRES 4XFE MSE A 190 MET MODIFIED RESIDUE MODRES 4XFE MSE A 240 MET MODIFIED RESIDUE MODRES 4XFE MSE A 265 MET MODIFIED RESIDUE MODRES 4XFE MSE A 316 MET MODIFIED RESIDUE HET MSE A 46 17 HET MSE A 62 17 HET MSE A 85 17 HET MSE A 105 17 HET MSE A 115 17 HET MSE A 144 17 HET MSE A 166 17 HET MSE A 179 17 HET MSE A 180 17 HET MSE A 183 17 HET MSE A 190 17 HET MSE A 240 17 HET MSE A 265 17 HET MSE A 316 17 HET BDP A 401 13 HET CXS A 402 33 HET SO4 A 403 5 HET SO4 A 404 5 HETNAM MSE SELENOMETHIONINE HETNAM BDP BETA-D-GLUCOPYRANURONIC ACID HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID HETNAM SO4 SULFATE ION HETSYN BDP D-GLUCURONIC ACID FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 2 BDP C6 H10 O7 FORMUL 3 CXS C9 H19 N O3 S FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *309(H2 O) HELIX 1 AA1 TYR A 37 SER A 54 1 18 HELIX 2 AA2 SER A 70 ILE A 80 1 11 HELIX 3 AA3 SER A 89 VAL A 93 5 5 HELIX 4 AA4 VAL A 97 MSE A 105 5 9 HELIX 5 AA5 ASP A 111 GLY A 121 1 11 HELIX 6 AA6 GLY A 121 ASN A 133 1 13 HELIX 7 AA7 SER A 159 LYS A 164 5 6 HELIX 8 AA8 ASN A 173 MSE A 183 1 11 HELIX 9 AA9 ASP A 191 GLY A 193 5 3 HELIX 10 AB1 GLU A 194 THR A 201 1 8 HELIX 11 AB2 ASN A 210 HIS A 217 1 8 HELIX 12 AB3 ASN A 218 SER A 222 5 5 HELIX 13 AB4 LYS A 242 ASN A 246 1 5 HELIX 14 AB5 THR A 249 ALA A 285 1 37 HELIX 15 AB6 LYS A 294 THR A 301 1 8 HELIX 16 AB7 THR A 301 ALA A 310 1 10 HELIX 17 AB8 TYR A 312 VAL A 322 1 11 SHEET 1 AA1 5 THR A 59 PHE A 63 0 SHEET 2 AA1 5 ASP A 26 ALA A 30 1 N PHE A 29 O PHE A 63 SHEET 3 AA1 5 MSE A 85 ARG A 87 1 O MSE A 85 N ALA A 30 SHEET 4 AA1 5 GLU A 236 SER A 241 -1 O VAL A 239 N THR A 86 SHEET 5 AA1 5 LEU A 138 MSE A 144 -1 N LEU A 141 O VAL A 238 SHEET 1 AA2 6 ASN A 186 ALA A 189 0 SHEET 2 AA2 6 LYS A 167 VAL A 170 1 N ILE A 168 O ASN A 186 SHEET 3 AA2 6 GLY A 206 ASN A 209 1 O GLY A 206 N ARG A 169 SHEET 4 AA2 6 ARG A 149 THR A 153 -1 N TYR A 152 O ALA A 207 SHEET 5 AA2 6 TYR A 225 LEU A 232 -1 O THR A 227 N ILE A 151 SHEET 6 AA2 6 GLU A 288 ILE A 290 1 O ILE A 290 N TYR A 226 LINK C ASN A 45 N MSE A 46 1555 1555 1.34 LINK C MSE A 46 N GLY A 47 1555 1555 1.33 LINK C LYS A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N PHE A 63 1555 1555 1.32 LINK C GLN A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N THR A 86 1555 1555 1.33 LINK C ASN A 104 N MSE A 105 1555 1555 1.32 LINK C MSE A 105 N PRO A 106 1555 1555 1.33 LINK C HIS A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N ARG A 116 1555 1555 1.33 LINK C TRP A 143 N MSE A 144 1555 1555 1.34 LINK C MSE A 144 N ASP A 145 1555 1555 1.32 LINK C GLY A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N LYS A 167 1555 1555 1.33 LINK C ASP A 178 N MSE A 179 1555 1555 1.34 LINK C MSE A 179 N MSE A 180 1555 1555 1.32 LINK C MSE A 180 N ASN A 181 1555 1555 1.33 LINK C ALA A 182 N MSE A 183 1555 1555 1.33 LINK C MSE A 183 N GLY A 184 1555 1555 1.33 LINK C ALA A 189 N MSE A 190 1555 1555 1.32 LINK C MSE A 190 N ASP A 191 1555 1555 1.34 LINK C VAL A 239 N MSE A 240 1555 1555 1.32 LINK C MSE A 240 N SER A 241 1555 1555 1.32 LINK C GLN A 264 N MSE A 265 1555 1555 1.33 LINK C MSE A 265 N GLU A 266 1555 1555 1.33 LINK C LEU A 315 N MSE A 316 1555 1555 1.33 LINK C MSE A 316 N LYS A 317 1555 1555 1.34 CRYST1 130.001 35.054 60.833 90.00 99.54 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007692 0.000000 0.001292 0.00000 SCALE2 0.000000 0.028527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016669 0.00000