HEADER OXIDOREDUCTASE 26-DEC-14 4XFG TITLE CYSTEINE DIOXYGENASE VARIANT - C93A AT PH 6.2 WITH CYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DIOXYGENASE TYPE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTEINE DIOXYGENASE TYPE I,CDO-I; COMPND 5 EC: 1.13.11.20; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CDO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CUPIN FOLD, CYSTEINE TO CYSTEINE SULFINIC ACID CATALYSIS, THIOL KEYWDS 2 DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.M.DRIGGERS,P.A.KARPLUS REVDAT 5 27-SEP-23 4XFG 1 LINK REVDAT 4 04-DEC-19 4XFG 1 REMARK REVDAT 3 20-SEP-17 4XFG 1 REMARK REVDAT 2 14-DEC-16 4XFG 1 JRNL REVDAT 1 24-FEB-16 4XFG 0 JRNL AUTH C.M.DRIGGERS,K.M.KEAN,L.L.HIRSCHBERGER,R.B.COOLEY, JRNL AUTH 2 M.H.STIPANUK,P.A.KARPLUS JRNL TITL STRUCTURE-BASED INSIGHTS INTO THE ROLE OF THE CYS-TYR JRNL TITL 2 CROSSLINK AND INHIBITOR RECOGNITION BY MAMMALIAN CYSTEINE JRNL TITL 3 DIOXYGENASE. JRNL REF J. MOL. BIOL. V. 428 3999 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 27477048 JRNL DOI 10.1016/J.JMB.2016.07.012 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.860 REMARK 3 FREE R VALUE TEST SET COUNT : 4073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9168 - 4.3016 1.00 1446 162 0.1405 0.1559 REMARK 3 2 4.3016 - 3.4154 1.00 1356 140 0.1305 0.1621 REMARK 3 3 3.4154 - 2.9839 1.00 1335 152 0.1458 0.1833 REMARK 3 4 2.9839 - 2.7112 1.00 1313 135 0.1654 0.2001 REMARK 3 5 2.7112 - 2.5170 1.00 1288 167 0.1539 0.2158 REMARK 3 6 2.5170 - 2.3686 1.00 1306 129 0.1534 0.1972 REMARK 3 7 2.3686 - 2.2500 1.00 1299 138 0.1503 0.1848 REMARK 3 8 2.2500 - 2.1521 1.00 1299 129 0.1528 0.2130 REMARK 3 9 2.1521 - 2.0692 1.00 1292 137 0.1452 0.1695 REMARK 3 10 2.0692 - 1.9979 1.00 1265 155 0.1641 0.1974 REMARK 3 11 1.9979 - 1.9354 1.00 1270 153 0.1467 0.1936 REMARK 3 12 1.9354 - 1.8801 1.00 1299 131 0.1621 0.2100 REMARK 3 13 1.8801 - 1.8306 1.00 1296 119 0.1570 0.1772 REMARK 3 14 1.8306 - 1.7859 1.00 1269 132 0.1578 0.1922 REMARK 3 15 1.7859 - 1.7453 1.00 1270 139 0.1622 0.2039 REMARK 3 16 1.7453 - 1.7082 1.00 1276 141 0.1675 0.1963 REMARK 3 17 1.7082 - 1.6740 1.00 1258 141 0.1661 0.2102 REMARK 3 18 1.6740 - 1.6424 1.00 1277 145 0.1786 0.2183 REMARK 3 19 1.6424 - 1.6131 1.00 1280 121 0.1795 0.2147 REMARK 3 20 1.6131 - 1.5858 1.00 1269 145 0.1904 0.1970 REMARK 3 21 1.5858 - 1.5602 1.00 1247 148 0.1984 0.2025 REMARK 3 22 1.5602 - 1.5362 1.00 1244 148 0.2128 0.2529 REMARK 3 23 1.5362 - 1.5136 1.00 1253 135 0.2176 0.2446 REMARK 3 24 1.5136 - 1.4923 1.00 1267 157 0.2464 0.2643 REMARK 3 25 1.4923 - 1.4721 1.00 1266 131 0.2735 0.2765 REMARK 3 26 1.4721 - 1.4530 1.00 1245 152 0.2956 0.3250 REMARK 3 27 1.4530 - 1.4348 1.00 1264 129 0.3071 0.3111 REMARK 3 28 1.4348 - 1.4175 1.00 1271 146 0.3321 0.3250 REMARK 3 29 1.4175 - 1.4010 0.98 1230 116 0.3461 0.3748 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1624 REMARK 3 ANGLE : 1.276 2206 REMARK 3 CHIRALITY : 0.080 236 REMARK 3 PLANARITY : 0.006 290 REMARK 3 DIHEDRAL : 12.799 610 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND RESID 5 THROUGH 190 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2465 2.9767 -49.8906 REMARK 3 T TENSOR REMARK 3 T11: 0.0823 T22: 0.0965 REMARK 3 T33: 0.0911 T12: -0.0040 REMARK 3 T13: -0.0021 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.7375 L22: 0.7058 REMARK 3 L33: 0.7559 L12: 0.2321 REMARK 3 L13: -0.2105 L23: -0.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0049 S13: -0.0220 REMARK 3 S21: 0.0092 S22: 0.0075 S23: -0.0117 REMARK 3 S31: 0.0457 S32: -0.0282 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : SI(220) ASYMMETRIC CUT SINGLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41323 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4IEU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI-SODIUM CITRATE PH=5.6, 24% REMARK 280 PEG 4000, 0.15M AMMONIUM ACETATE. 1:1 DROP RATIO WITH REMARK 280 MICROSEEDING.; SOAK SOLUTION AT PH 6.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.20000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.80000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.80000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.80000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.60000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.80000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 91.80000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.80000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.60000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 698 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 THR A 4 REMARK 465 PHE A 191 REMARK 465 THR A 192 REMARK 465 THR A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 SER A 196 REMARK 465 LEU A 197 REMARK 465 GLU A 198 REMARK 465 ASN A 199 REMARK 465 ASN A 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 10 CZ NH1 NH2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LYS A 184 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 891 O HOH A 892 2.11 REMARK 500 O HOH A 832 O HOH A 892 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 128 -9.78 77.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HIS A 88 NE2 99.9 REMARK 620 3 HIS A 140 NE2 94.8 93.3 REMARK 620 4 CYS A 502 SG 101.7 156.0 95.2 REMARK 620 5 CYS A 502 N 83.0 94.9 171.8 77.6 REMARK 620 6 CL A 503 CL 138.7 111.7 108.8 44.3 68.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IEO RELATED DB: PDB REMARK 900 UNLIGANDED WT CDO AT PH 4.0 IN THE PRESENCE OF CYS REMARK 900 RELATED ID: 4IEP RELATED DB: PDB REMARK 900 UNLIGANDED WT CDO AT PH 4.5 IN THE PRESENCE OF CYS REMARK 900 RELATED ID: 4IEQ RELATED DB: PDB REMARK 900 UNLIGANDED WT CDO AT PH 5.0 IN THE PRESENCE OF CYS REMARK 900 RELATED ID: 4IER RELATED DB: PDB REMARK 900 CYS-PERSULFENATE BOUND WT CDO AT PH 5.5 IN THE PRESENCE OF CYS REMARK 900 RELATED ID: 4IES RELATED DB: PDB REMARK 900 CYS-PERSULFEANTE BOUND WT CDO AT PH 6.2 IN THE PRESENCE OF CYS REMARK 900 RELATED ID: 4IET RELATED DB: PDB REMARK 900 CYS-PERSULFEANTE BOUND WT CDO AT PH 6.8 IN THE PRESENCE OF CYS REMARK 900 RELATED ID: 4IEU RELATED DB: PDB REMARK 900 CYS-PERSULFENATE BOUND WT CDO AT PH 7.0 IN THE PRESENCE OF CYS REMARK 900 RELATED ID: 4IEV RELATED DB: PDB REMARK 900 CYS-ONLY BOUND WT CDO AT PH 8.0 IN THE PRESENCE OF CYS REMARK 900 RELATED ID: 4IEW RELATED DB: PDB REMARK 900 CYS-ONLY BOUND CYSTEINE DIOXYGENASE AT PH 9.0 IN THE PRESENCE OF CYS REMARK 900 RELATED ID: 4IEX RELATED DB: PDB REMARK 900 UNLIGANDED ROOM-TEMP WT CDO AT PH 6.2 REMARK 900 RELATED ID: 4IEY RELATED DB: PDB REMARK 900 CYS-PERSULFEANTE BOUND WT CDO AT PH 7.0 IN THE PRESENCE OF CYS,HOME- REMARK 900 SOURCE STRUCTURE REMARK 900 RELATED ID: 4IEZ RELATED DB: PDB REMARK 900 UNLIGANDED WT CDO AT PH 8.0 REMARK 900 RELATED ID: 4JTN RELATED DB: PDB REMARK 900 WT CDO AT PH 8.0 IN THE PRESENCE OF DITHIONITE REMARK 900 RELATED ID: 4JTO RELATED DB: PDB REMARK 900 CYS-ONLY BOUND WT CDO AT PH 8.0 IN THE PRESENCE OF CYS AND REMARK 900 DITHIONITE REMARK 900 RELATED ID: 4KWK RELATED DB: PDB REMARK 900 CYS-PERSULFIDE BOUND WT CDO REMARK 900 RELATED ID: 4KWL RELATED DB: PDB REMARK 900 3-MERCAPTOPROPIONATE-PERSULFIDE BOUND WT CDO REMARK 900 RELATED ID: 4PIX RELATED DB: PDB REMARK 900 UNLIGANDED C93A CDO AT PH 6.2 REMARK 900 RELATED ID: 4PIY RELATED DB: PDB REMARK 900 HOMOCYSTEINE-BOUND C93A CDO AT PH 6.2 REMARK 900 RELATED ID: 4PIZ RELATED DB: PDB REMARK 900 HOMOCYSTEINE-BOUND WT CDO AT PH 6.2 REMARK 900 RELATED ID: 4PJY RELATED DB: PDB REMARK 900 AZIDE-BOUND WT CDO AT PH 6.2 REMARK 900 RELATED ID: 4EXT RELATED DB: PDB REMARK 900 FE-CL BOUND Y157F AT PH ~7.0 IN THE PRESENCE OF AZIDE REMARK 900 RELATED ID: 4XEZ RELATED DB: PDB REMARK 900 CYSTEINE DIOXYGENASE VARIANT - Y157F AT PH 8.0 WITH DITHIONITE REMARK 900 RELATED ID: 4XF0 RELATED DB: PDB REMARK 900 CYSTEINE DIOXYGENASE VARIANT - C93A AT PH 8.0 WITH CYSTEINE REMARK 900 RELATED ID: 4XF1 RELATED DB: PDB REMARK 900 CYSTEINE DIOXYGENASE VARIANT - Y157F AT PH 8.0 WITH CYSTEINE REMARK 900 RELATED ID: 4XF3 RELATED DB: PDB REMARK 900 CYSTEINE DIOXYGENASE VARIANT - Y157F AT PH 8.0 WITH CYSTEINE AND REMARK 900 DITHIONITE REMARK 900 RELATED ID: 4XF4 RELATED DB: PDB REMARK 900 CYSTEINE DIOXYGENASE AT PH 8.0 IN COMPLEX WITH HOMOCYSTEINE REMARK 900 RELATED ID: 4XF9 RELATED DB: PDB REMARK 900 CYSTEINE DIOXYGENASE VARIANT - C93A AT PH 8.0 IN COMPLEX WITH REMARK 900 HOMOCYSTEINE REMARK 900 RELATED ID: 4XFA RELATED DB: PDB REMARK 900 CYSTEINE DIOXYGENASE VARIANT - Y157F AT PH 8.0 IN COMPLEX WITH REMARK 900 HOMOCYSTEINE REMARK 900 RELATED ID: 4XFB RELATED DB: PDB REMARK 900 CYSTEINE DIOXYGENASE VARIANT - C93A AT PH 8.0 UNLIGANDED REMARK 900 RELATED ID: 4XFC RELATED DB: PDB REMARK 900 CYSTEINE DIOXYGENASE VARIANT - Y157F AT PH 6.2 UNLIGANDED REMARK 900 RELATED ID: 4XFF RELATED DB: PDB REMARK 900 CYSTEINE DIOXYGENASE VARIANT - Y157F AT PH 6.2 WITH DITHIONITE REMARK 900 RELATED ID: 4XFH RELATED DB: PDB REMARK 900 RELATED ID: 4XFI RELATED DB: PDB DBREF 4XFG A 1 200 UNP P21816 CDO1_RAT 1 200 SEQADV 4XFG ALA A 93 UNP P21816 CYS 93 ENGINEERED MUTATION SEQRES 1 A 200 MET GLU ARG THR GLU LEU LEU LYS PRO ARG THR LEU ALA SEQRES 2 A 200 ASP LEU ILE ARG ILE LEU HIS GLU LEU PHE ALA GLY ASP SEQRES 3 A 200 GLU VAL ASN VAL GLU GLU VAL GLN ALA VAL LEU GLU ALA SEQRES 4 A 200 TYR GLU SER ASN PRO ALA GLU TRP ALA LEU TYR ALA LYS SEQRES 5 A 200 PHE ASP GLN TYR ARG TYR THR ARG ASN LEU VAL ASP GLN SEQRES 6 A 200 GLY ASN GLY LYS PHE ASN LEU MET ILE LEU CYS TRP GLY SEQRES 7 A 200 GLU GLY HIS GLY SER SER ILE HIS ASP HIS THR ASP SER SEQRES 8 A 200 HIS ALA PHE LEU LYS LEU LEU GLN GLY ASN LEU LYS GLU SEQRES 9 A 200 THR LEU PHE ASP TRP PRO ASP LYS LYS SER ASN GLU MET SEQRES 10 A 200 ILE LYS LYS SER GLU ARG THR LEU ARG GLU ASN GLN CYS SEQRES 11 A 200 ALA TYR ILE ASN ASP SER ILE GLY LEU HIS ARG VAL GLU SEQRES 12 A 200 ASN VAL SER HIS THR GLU PRO ALA VAL SER LEU HIS LEU SEQRES 13 A 200 TYR SER PRO PRO PHE ASP THR CYS HIS ALA PHE ASP GLN SEQRES 14 A 200 ARG THR GLY HIS LYS ASN LYS VAL THR MET THR PHE HIS SEQRES 15 A 200 SER LYS PHE GLY ILE ARG THR PRO PHE THR THR SER GLY SEQRES 16 A 200 SER LEU GLU ASN ASN HET FE A 501 1 HET CYS A 502 7 HET CL A 503 1 HETNAM FE FE (III) ION HETNAM CYS CYSTEINE HETNAM CL CHLORIDE ION FORMUL 2 FE FE 3+ FORMUL 3 CYS C3 H7 N O2 S FORMUL 4 CL CL 1- FORMUL 5 HOH *299(H2 O) HELIX 1 AA1 THR A 11 PHE A 23 1 13 HELIX 2 AA2 ASN A 29 TYR A 40 1 12 HELIX 3 AA3 ASN A 43 ALA A 48 1 6 HELIX 4 AA4 LEU A 49 ALA A 51 5 3 HELIX 5 AA5 GLN A 65 LYS A 69 5 5 SHEET 1 AA1 7 CYS A 130 ILE A 133 0 SHEET 2 AA1 7 HIS A 92 GLN A 99 -1 N LEU A 95 O ALA A 131 SHEET 3 AA1 7 ALA A 151 SER A 158 -1 O LEU A 154 N LYS A 96 SHEET 4 AA1 7 ASN A 71 TRP A 77 -1 N MET A 73 O HIS A 155 SHEET 5 AA1 7 THR A 59 ASP A 64 -1 N VAL A 63 O LEU A 72 SHEET 6 AA1 7 SER A 183 LYS A 184 1 O SER A 183 N LEU A 62 SHEET 7 AA1 7 ILE A 187 ARG A 188 -1 O ILE A 187 N LYS A 184 SHEET 1 AA2 3 ILE A 85 HIS A 86 0 SHEET 2 AA2 3 THR A 163 PHE A 167 -1 O PHE A 167 N ILE A 85 SHEET 3 AA2 3 LYS A 174 THR A 178 -1 O VAL A 177 N CYS A 164 SHEET 1 AA3 3 SER A 121 LEU A 125 0 SHEET 2 AA3 3 LEU A 102 PHE A 107 -1 N LEU A 102 O LEU A 125 SHEET 3 AA3 3 LEU A 139 GLU A 143 -1 O GLU A 143 N LYS A 103 LINK NE2 HIS A 86 FE FE A 501 1555 1555 2.02 LINK NE2 HIS A 88 FE FE A 501 1555 1555 2.11 LINK NE2 HIS A 140 FE FE A 501 1555 1555 2.15 LINK FE FE A 501 SG ACYS A 502 1555 1555 2.43 LINK FE FE A 501 N ACYS A 502 1555 1555 2.59 LINK FE FE A 501 CL B CL A 503 1555 1555 2.09 CISPEP 1 SER A 158 PRO A 159 0 -6.26 SITE 1 AC1 5 HIS A 86 HIS A 88 HIS A 140 CYS A 502 SITE 2 AC1 5 CL A 503 SITE 1 AC2 14 TYR A 58 ARG A 60 LEU A 75 HIS A 86 SITE 2 AC2 14 HIS A 88 HIS A 140 VAL A 142 HIS A 155 SITE 3 AC2 14 TYR A 157 MET A 179 FE A 501 CL A 503 SITE 4 AC2 14 HOH A 789 HOH A 896 SITE 1 AC3 7 HIS A 88 HIS A 140 HIS A 155 TYR A 157 SITE 2 AC3 7 FE A 501 CYS A 502 HOH A 896 CRYST1 57.600 57.600 122.400 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008170 0.00000