HEADER TRANSFERASE/TRANSFERASE INHIBITOR 30-DEC-14 4XG8 TITLE CRYSTAL STRUCTURE OF AN INHIBITOR-BOUND SYK COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE SYK; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN, RESIDUES 356-635; COMPND 5 SYNONYM: SPLEEN TYROSINE KINASE,P72-SYK; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SYK KINASE, INHIBITOR, SPLEEN TYROSINE KINASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.J.LEE,J.CHOI,B.G.HAN,H.SONG,J.S.KOH,B.I.LEE REVDAT 5 08-NOV-23 4XG8 1 REMARK REVDAT 4 05-FEB-20 4XG8 1 REMARK REVDAT 3 19-OCT-16 4XG8 1 JRNL REVDAT 2 31-AUG-16 4XG8 1 JRNL REVDAT 1 30-DEC-15 4XG8 0 JRNL AUTH S.J.LEE,J.S.CHOI,B.G.HAN,H.S.KIM,H.J.SONG,J.LEE,S.NAM, JRNL AUTH 2 S.H.GOH,J.H.KIM,J.S.KOH,B.I.LEE JRNL TITL CRYSTAL STRUCTURES OF SPLEEN TYROSINE KINASE IN COMPLEX WITH JRNL TITL 2 NOVEL INHIBITORS: STRUCTURAL INSIGHTS FOR DESIGN OF JRNL TITL 3 ANTICANCER DRUGS JRNL REF FEBS J. V. 283 3613 2016 JRNL REFN ISSN 1742-464X JRNL PMID 27504936 JRNL DOI 10.1111/FEBS.13831 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 19912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1330 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : 3.93000 REMARK 3 B33 (A**2) : -2.51000 REMARK 3 B12 (A**2) : -1.97000 REMARK 3 B13 (A**2) : -0.60000 REMARK 3 B23 (A**2) : 0.27000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.731 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.313 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4299 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4194 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5790 ; 1.534 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9545 ; 1.065 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 503 ; 6.688 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;35.889 ;24.213 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 786 ;15.144 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.548 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4750 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 980 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2039 ; 3.258 ; 5.435 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2038 ; 3.247 ; 5.434 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2533 ; 5.021 ; 8.129 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2534 ; 5.021 ; 8.131 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2260 ; 3.243 ; 5.710 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2261 ; 3.243 ; 5.710 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3254 ; 5.076 ; 8.455 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4908 ; 7.607 ;42.952 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4909 ; 7.607 ;42.956 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XG8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20930 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4XG2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10~20%(V/V) PEG3350, 100 MM TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 ILE A 358 REMARK 465 ARG A 359 REMARK 465 PRO A 360 REMARK 465 LYS A 361 REMARK 465 GLU A 362 REMARK 465 VAL A 363 REMARK 465 TYR A 364 REMARK 465 LEU A 365 REMARK 465 ASN A 381 REMARK 465 PHE A 382 REMARK 465 LYS A 393 REMARK 465 LYS A 394 REMARK 465 LYS A 405 REMARK 465 ASN A 406 REMARK 465 GLU A 407 REMARK 465 ALA A 408 REMARK 465 ASN A 409 REMARK 465 GLY A 532 REMARK 465 LYS A 533 REMARK 465 TRP A 534 REMARK 465 LEU A 636 REMARK 465 GLU A 637 REMARK 465 HIS A 638 REMARK 465 HIS A 639 REMARK 465 HIS A 640 REMARK 465 HIS A 641 REMARK 465 HIS A 642 REMARK 465 HIS A 643 REMARK 465 HIS A 644 REMARK 465 HIS A 645 REMARK 465 GLU C 356 REMARK 465 GLU C 357 REMARK 465 ILE C 358 REMARK 465 ARG C 359 REMARK 465 PRO C 360 REMARK 465 LYS C 361 REMARK 465 GLU C 362 REMARK 465 VAL C 363 REMARK 465 ASN C 381 REMARK 465 PHE C 382 REMARK 465 ASN C 406 REMARK 465 GLU C 407 REMARK 465 ALA C 408 REMARK 465 ASN C 409 REMARK 465 ASP C 410 REMARK 465 THR C 530 REMARK 465 HIS C 531 REMARK 465 GLY C 532 REMARK 465 LYS C 533 REMARK 465 TRP C 534 REMARK 465 TYR C 630 REMARK 465 TYR C 631 REMARK 465 ASP C 632 REMARK 465 VAL C 633 REMARK 465 VAL C 634 REMARK 465 ASN C 635 REMARK 465 LEU C 636 REMARK 465 GLU C 637 REMARK 465 HIS C 638 REMARK 465 HIS C 639 REMARK 465 HIS C 640 REMARK 465 HIS C 641 REMARK 465 HIS C 642 REMARK 465 HIS C 643 REMARK 465 HIS C 644 REMARK 465 HIS C 645 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 599 O HOH C 801 1.67 REMARK 500 NH2 ARG C 464 O HOH C 802 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 369 33.31 -90.98 REMARK 500 ALA A 441 -144.51 -153.61 REMARK 500 HIS A 465 5.90 -67.34 REMARK 500 ASP A 494 31.15 -147.68 REMARK 500 ASP A 512 68.41 66.71 REMARK 500 SER A 567 31.84 -92.65 REMARK 500 TYR A 568 43.32 35.10 REMARK 500 TYR A 573 52.33 36.97 REMARK 500 LYS C 375 -169.95 -78.18 REMARK 500 LYS C 394 -31.30 -143.89 REMARK 500 ALA C 441 -85.24 -138.76 REMARK 500 ASP C 494 38.60 -150.76 REMARK 500 ASP C 512 72.58 65.43 REMARK 500 PRO C 598 175.06 -54.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X8G A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X8G C 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XG2 RELATED DB: PDB REMARK 900 A LIGAND-FREE PROTEIN REMARK 900 RELATED ID: 4XG3 RELATED DB: PDB REMARK 900 RELATED ID: 4XG4 RELATED DB: PDB REMARK 900 RELATED ID: 4XG5 RELATED DB: PDB REMARK 900 RELATED ID: 4XG6 RELATED DB: PDB REMARK 900 RELATED ID: 4XG7 RELATED DB: PDB REMARK 900 RELATED ID: 4XG9 RELATED DB: PDB DBREF 4XG8 A 356 635 UNP P43405 KSYK_HUMAN 356 635 DBREF 4XG8 C 356 635 UNP P43405 KSYK_HUMAN 356 635 SEQADV 4XG8 LEU A 636 UNP P43405 EXPRESSION TAG SEQADV 4XG8 GLU A 637 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 638 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 639 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 640 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 641 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 642 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 643 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 644 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS A 645 UNP P43405 EXPRESSION TAG SEQADV 4XG8 LEU C 636 UNP P43405 EXPRESSION TAG SEQADV 4XG8 GLU C 637 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 638 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 639 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 640 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 641 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 642 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 643 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 644 UNP P43405 EXPRESSION TAG SEQADV 4XG8 HIS C 645 UNP P43405 EXPRESSION TAG SEQRES 1 A 290 GLU GLU ILE ARG PRO LYS GLU VAL TYR LEU ASP ARG LYS SEQRES 2 A 290 LEU LEU THR LEU GLU ASP LYS GLU LEU GLY SER GLY ASN SEQRES 3 A 290 PHE GLY THR VAL LYS LYS GLY TYR TYR GLN MET LYS LYS SEQRES 4 A 290 VAL VAL LYS THR VAL ALA VAL LYS ILE LEU LYS ASN GLU SEQRES 5 A 290 ALA ASN ASP PRO ALA LEU LYS ASP GLU LEU LEU ALA GLU SEQRES 6 A 290 ALA ASN VAL MET GLN GLN LEU ASP ASN PRO TYR ILE VAL SEQRES 7 A 290 ARG MET ILE GLY ILE CYS GLU ALA GLU SER TRP MET LEU SEQRES 8 A 290 VAL MET GLU MET ALA GLU LEU GLY PRO LEU ASN LYS TYR SEQRES 9 A 290 LEU GLN GLN ASN ARG HIS VAL LYS ASP LYS ASN ILE ILE SEQRES 10 A 290 GLU LEU VAL HIS GLN VAL SER MET GLY MET LYS TYR LEU SEQRES 11 A 290 GLU GLU SER ASN PHE VAL HIS ARG ASP LEU ALA ALA ARG SEQRES 12 A 290 ASN VAL LEU LEU VAL THR GLN HIS TYR ALA LYS ILE SER SEQRES 13 A 290 ASP PHE GLY LEU SER LYS ALA LEU ARG ALA ASP GLU ASN SEQRES 14 A 290 TYR TYR LYS ALA GLN THR HIS GLY LYS TRP PRO VAL LYS SEQRES 15 A 290 TRP TYR ALA PRO GLU CYS ILE ASN TYR TYR LYS PHE SER SEQRES 16 A 290 SER LYS SER ASP VAL TRP SER PHE GLY VAL LEU MET TRP SEQRES 17 A 290 GLU ALA PHE SER TYR GLY GLN LYS PRO TYR ARG GLY MET SEQRES 18 A 290 LYS GLY SER GLU VAL THR ALA MET LEU GLU LYS GLY GLU SEQRES 19 A 290 ARG MET GLY CYS PRO ALA GLY CYS PRO ARG GLU MET TYR SEQRES 20 A 290 ASP LEU MET ASN LEU CYS TRP THR TYR ASP VAL GLU ASN SEQRES 21 A 290 ARG PRO GLY PHE ALA ALA VAL GLU LEU ARG LEU ARG ASN SEQRES 22 A 290 TYR TYR TYR ASP VAL VAL ASN LEU GLU HIS HIS HIS HIS SEQRES 23 A 290 HIS HIS HIS HIS SEQRES 1 C 290 GLU GLU ILE ARG PRO LYS GLU VAL TYR LEU ASP ARG LYS SEQRES 2 C 290 LEU LEU THR LEU GLU ASP LYS GLU LEU GLY SER GLY ASN SEQRES 3 C 290 PHE GLY THR VAL LYS LYS GLY TYR TYR GLN MET LYS LYS SEQRES 4 C 290 VAL VAL LYS THR VAL ALA VAL LYS ILE LEU LYS ASN GLU SEQRES 5 C 290 ALA ASN ASP PRO ALA LEU LYS ASP GLU LEU LEU ALA GLU SEQRES 6 C 290 ALA ASN VAL MET GLN GLN LEU ASP ASN PRO TYR ILE VAL SEQRES 7 C 290 ARG MET ILE GLY ILE CYS GLU ALA GLU SER TRP MET LEU SEQRES 8 C 290 VAL MET GLU MET ALA GLU LEU GLY PRO LEU ASN LYS TYR SEQRES 9 C 290 LEU GLN GLN ASN ARG HIS VAL LYS ASP LYS ASN ILE ILE SEQRES 10 C 290 GLU LEU VAL HIS GLN VAL SER MET GLY MET LYS TYR LEU SEQRES 11 C 290 GLU GLU SER ASN PHE VAL HIS ARG ASP LEU ALA ALA ARG SEQRES 12 C 290 ASN VAL LEU LEU VAL THR GLN HIS TYR ALA LYS ILE SER SEQRES 13 C 290 ASP PHE GLY LEU SER LYS ALA LEU ARG ALA ASP GLU ASN SEQRES 14 C 290 TYR TYR LYS ALA GLN THR HIS GLY LYS TRP PRO VAL LYS SEQRES 15 C 290 TRP TYR ALA PRO GLU CYS ILE ASN TYR TYR LYS PHE SER SEQRES 16 C 290 SER LYS SER ASP VAL TRP SER PHE GLY VAL LEU MET TRP SEQRES 17 C 290 GLU ALA PHE SER TYR GLY GLN LYS PRO TYR ARG GLY MET SEQRES 18 C 290 LYS GLY SER GLU VAL THR ALA MET LEU GLU LYS GLY GLU SEQRES 19 C 290 ARG MET GLY CYS PRO ALA GLY CYS PRO ARG GLU MET TYR SEQRES 20 C 290 ASP LEU MET ASN LEU CYS TRP THR TYR ASP VAL GLU ASN SEQRES 21 C 290 ARG PRO GLY PHE ALA ALA VAL GLU LEU ARG LEU ARG ASN SEQRES 22 C 290 TYR TYR TYR ASP VAL VAL ASN LEU GLU HIS HIS HIS HIS SEQRES 23 C 290 HIS HIS HIS HIS HET X8G A 700 30 HET X8G C 700 30 HETNAM X8G 1-[(1-{2-[(3-CHLORO-1-METHYL-1H-INDAZOL-5-YL) HETNAM 2 X8G AMINO]PYRIMIDIN-4-YL}-3-METHYL-1H-PYRAZOL-4-YL) HETNAM 3 X8G METHYL]AZETIDIN-3-OL FORMUL 3 X8G 2(C20 H21 CL N8 O) FORMUL 5 HOH *32(H2 O) HELIX 1 AA1 ASP A 366 LYS A 368 5 3 HELIX 2 AA2 PRO A 411 GLN A 426 1 16 HELIX 3 AA3 LEU A 456 ASN A 463 1 8 HELIX 4 AA4 LYS A 467 SER A 488 1 22 HELIX 5 AA5 ALA A 496 ARG A 498 5 3 HELIX 6 AA6 ASP A 512 SER A 516 5 5 HELIX 7 AA7 PRO A 535 TYR A 539 5 5 HELIX 8 AA8 ALA A 540 TYR A 547 1 8 HELIX 9 AA9 SER A 551 SER A 567 1 17 HELIX 10 AB1 LYS A 577 LYS A 587 1 11 HELIX 11 AB2 PRO A 598 TRP A 609 1 12 HELIX 12 AB3 GLY A 618 ASN A 635 1 18 HELIX 13 AB4 ASP C 366 LYS C 368 5 3 HELIX 14 AB5 ALA C 412 GLN C 426 1 15 HELIX 15 AB6 LEU C 456 GLN C 462 1 7 HELIX 16 AB7 LYS C 467 SER C 488 1 22 HELIX 17 AB8 ALA C 496 ARG C 498 5 3 HELIX 18 AB9 PRO C 535 TYR C 539 5 5 HELIX 19 AC1 ALA C 540 TYR C 546 1 7 HELIX 20 AC2 SER C 551 SER C 567 1 17 HELIX 21 AC3 LYS C 577 LYS C 587 1 11 HELIX 22 AC4 PRO C 598 TRP C 609 1 12 HELIX 23 AC5 GLY C 618 TYR C 629 1 12 SHEET 1 AA1 5 LEU A 370 LEU A 372 0 SHEET 2 AA1 5 THR A 384 TYR A 390 -1 O TYR A 389 N THR A 371 SHEET 3 AA1 5 LYS A 397 ILE A 403 -1 O VAL A 399 N GLY A 388 SHEET 4 AA1 5 TRP A 444 GLU A 449 -1 O MET A 448 N ALA A 400 SHEET 5 AA1 5 MET A 435 GLU A 440 -1 N ILE A 436 O VAL A 447 SHEET 1 AA2 3 GLY A 454 PRO A 455 0 SHEET 2 AA2 3 VAL A 500 THR A 504 -1 O LEU A 502 N GLY A 454 SHEET 3 AA2 3 TYR A 507 ILE A 510 -1 O LYS A 509 N LEU A 501 SHEET 1 AA3 2 PHE A 490 VAL A 491 0 SHEET 2 AA3 2 LYS A 517 ALA A 518 -1 O LYS A 517 N VAL A 491 SHEET 1 AA4 2 TYR A 525 LYS A 527 0 SHEET 2 AA4 2 LYS A 548 SER A 550 -1 O PHE A 549 N TYR A 526 SHEET 1 AA5 4 GLU A 589 ARG A 590 0 SHEET 2 AA5 4 VAL C 396 ILE C 403 -1 O VAL C 396 N ARG A 590 SHEET 3 AA5 4 THR C 384 GLN C 391 -1 N GLY C 388 O VAL C 399 SHEET 4 AA5 4 LEU C 370 LEU C 372 -1 N THR C 371 O TYR C 389 SHEET 1 AA6 4 GLU A 589 ARG A 590 0 SHEET 2 AA6 4 VAL C 396 ILE C 403 -1 O VAL C 396 N ARG A 590 SHEET 3 AA6 4 TRP C 444 GLU C 449 -1 O MET C 448 N ALA C 400 SHEET 4 AA6 4 MET C 435 GLU C 440 -1 N ILE C 436 O VAL C 447 SHEET 1 AA7 3 GLY C 454 PRO C 455 0 SHEET 2 AA7 3 VAL C 500 THR C 504 -1 O LEU C 502 N GLY C 454 SHEET 3 AA7 3 TYR C 507 ILE C 510 -1 O LYS C 509 N LEU C 501 SHEET 1 AA8 2 PHE C 490 VAL C 491 0 SHEET 2 AA8 2 LYS C 517 ALA C 518 -1 O LYS C 517 N VAL C 491 SHEET 1 AA9 2 TYR C 525 LYS C 527 0 SHEET 2 AA9 2 LYS C 548 SER C 550 -1 O PHE C 549 N TYR C 526 SITE 1 AC1 11 LEU A 377 MET A 448 GLU A 449 MET A 450 SITE 2 AC1 11 ALA A 451 GLY A 454 PRO A 455 ARG A 498 SITE 3 AC1 11 ASN A 499 LEU A 501 ASP A 512 SITE 1 AC2 15 LEU C 377 GLY C 378 VAL C 385 ALA C 400 SITE 2 AC2 15 MET C 448 GLU C 449 MET C 450 ALA C 451 SITE 3 AC2 15 GLY C 454 PRO C 455 ARG C 498 ASN C 499 SITE 4 AC2 15 LEU C 501 SER C 511 ASP C 512 CRYST1 39.964 42.212 87.720 99.97 90.50 101.05 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025023 0.004887 0.001108 0.00000 SCALE2 0.000000 0.024138 0.004370 0.00000 SCALE3 0.000000 0.000000 0.011586 0.00000 TER 2090 ASN A 635 TER 4148 TYR C 629 HETATM 4149 C4 X8G A 700 -4.874 -6.234 1.855 1.00 47.42 C HETATM 4150 C5 X8G A 700 -5.934 -5.338 1.813 1.00 41.90 C HETATM 4151 C6 X8G A 700 -5.711 -4.145 1.133 1.00 42.16 C HETATM 4152 N1 X8G A 700 -4.484 -3.815 0.518 1.00 43.70 N HETATM 4153 N3 X8G A 700 -3.729 -5.830 1.267 1.00 46.02 N HETATM 4154 CAL X8G A 700 -1.466 -10.492 5.942 1.00 58.80 C HETATM 4155 CBA X8G A 700 -1.214 -9.069 6.531 1.00 60.32 C HETATM 4156 OAC X8G A 700 0.093 -8.554 6.286 1.00 58.09 O HETATM 4157 CAM X8G A 700 -2.211 -8.513 5.552 1.00 60.66 C HETATM 4158 NBB X8G A 700 -2.089 -9.773 4.774 1.00 61.36 N HETATM 4159 CAK X8G A 700 -3.303 -10.327 4.150 1.00 52.63 C HETATM 4160 CAU X8G A 700 -4.189 -9.175 3.604 1.00 49.88 C HETATM 4161 CAJ X8G A 700 -3.808 -8.178 2.848 1.00 48.72 C HETATM 4162 CAS X8G A 700 -5.470 -8.959 3.780 1.00 46.50 C HETATM 4163 CAA X8G A 700 -6.446 -9.847 4.561 1.00 44.24 C HETATM 4164 NAP X8G A 700 -5.808 -7.849 3.121 1.00 45.23 N HETATM 4165 NBD X8G A 700 -4.880 -7.400 2.549 1.00 47.38 N HETATM 4166 C2 X8G A 700 -3.468 -4.689 0.602 1.00 47.17 C HETATM 4167 NAR X8G A 700 -2.221 -4.461 0.059 1.00 50.57 N HETATM 4168 CAT X8G A 700 -1.204 -5.327 0.328 1.00 53.53 C HETATM 4169 CAI X8G A 700 0.158 -5.231 -0.030 1.00 59.43 C HETATM 4170 CAY X8G A 700 1.004 -6.235 0.347 1.00 61.14 C HETATM 4171 CAV X8G A 700 2.278 -6.542 0.238 1.00 67.10 C HETATM 4172 CL1 X8G A 700 3.449 -5.597 -0.541 1.00 93.25 CL HETATM 4173 NAQ X8G A 700 2.551 -7.708 0.839 1.00 62.84 N HETATM 4174 NBC X8G A 700 1.605 -8.135 1.297 1.00 59.15 N HETATM 4175 CAB X8G A 700 1.313 -9.404 2.089 1.00 50.94 C HETATM 4176 CAZ X8G A 700 0.618 -7.294 1.041 1.00 61.23 C HETATM 4177 CAH X8G A 700 -0.615 -7.411 1.385 1.00 60.83 C HETATM 4178 CAG X8G A 700 -1.498 -6.454 1.034 1.00 55.61 C HETATM 4179 C4 X8G C 700 4.170 -0.948 47.472 1.00 41.40 C HETATM 4180 C5 X8G C 700 5.315 -1.624 47.059 1.00 40.60 C HETATM 4181 C6 X8G C 700 5.205 -2.439 45.926 1.00 40.53 C HETATM 4182 N1 X8G C 700 3.994 -2.567 45.208 1.00 41.40 N HETATM 4183 N3 X8G C 700 3.070 -1.153 46.731 1.00 39.75 N HETATM 4184 CAL X8G C 700 0.592 1.494 52.786 1.00 45.85 C HETATM 4185 CBA X8G C 700 0.281 0.022 52.887 1.00 44.65 C HETATM 4186 OAC X8G C 700 -1.024 -0.283 52.438 1.00 45.76 O HETATM 4187 CAM X8G C 700 1.289 -0.242 51.817 1.00 46.74 C HETATM 4188 NBB X8G C 700 1.275 1.198 51.493 1.00 47.74 N HETATM 4189 CAK X8G C 700 2.542 1.889 51.224 1.00 43.58 C HETATM 4190 CAU X8G C 700 3.419 1.084 50.213 1.00 44.96 C HETATM 4191 CAJ X8G C 700 3.018 0.383 49.163 1.00 44.11 C HETATM 4192 CAS X8G C 700 4.731 0.952 50.211 1.00 42.87 C HETATM 4193 CAA X8G C 700 5.738 1.570 51.182 1.00 42.03 C HETATM 4194 NAP X8G C 700 5.069 0.200 49.187 1.00 43.50 N HETATM 4195 NBD X8G C 700 4.111 -0.148 48.570 1.00 43.87 N HETATM 4196 C2 X8G C 700 2.910 -1.914 45.628 1.00 41.73 C HETATM 4197 NAR X8G C 700 1.708 -2.010 44.972 1.00 47.97 N HETATM 4198 CAT X8G C 700 0.638 -1.325 45.432 1.00 55.02 C HETATM 4199 CAI X8G C 700 -0.730 -1.452 45.069 1.00 63.20 C HETATM 4200 CAY X8G C 700 -1.629 -0.623 45.699 1.00 69.77 C HETATM 4201 CAV X8G C 700 -2.922 -0.363 45.726 1.00 72.78 C HETATM 4202 CL1 X8G C 700 -4.114 -1.112 44.823 1.00 97.82 CL HETATM 4203 NAQ X8G C 700 -3.208 0.603 46.599 1.00 67.45 N HETATM 4204 NBC X8G C 700 -2.307 0.941 47.077 1.00 65.43 N HETATM 4205 CAB X8G C 700 -2.065 1.987 48.125 1.00 61.77 C HETATM 4206 CAZ X8G C 700 -1.276 0.275 46.617 1.00 68.38 C HETATM 4207 CAH X8G C 700 -0.037 0.420 46.964 1.00 70.59 C HETATM 4208 CAG X8G C 700 0.896 -0.362 46.382 1.00 62.55 C HETATM 4209 O HOH A 801 -15.986 -4.020 23.743 1.00 35.51 O HETATM 4210 O HOH A 802 -9.719 -9.971 6.815 1.00 40.19 O HETATM 4211 O HOH A 803 -9.333 -9.554 27.939 1.00 46.97 O HETATM 4212 O HOH A 804 -17.348 -12.623 33.497 1.00 48.82 O HETATM 4213 O HOH A 805 -12.005 -3.898 20.172 1.00 53.70 O HETATM 4214 O HOH A 806 -18.270 -0.171 -14.284 1.00 54.05 O HETATM 4215 O HOH A 807 3.424 -6.942 13.326 1.00 37.42 O HETATM 4216 O HOH A 808 3.116 -8.434 25.004 1.00 31.39 O HETATM 4217 O HOH A 809 10.572 8.133 15.120 1.00 44.06 O HETATM 4218 O HOH A 810 -14.592 -1.726 6.706 1.00 49.60 O HETATM 4219 O HOH A 811 -19.990 -6.442 -4.605 1.00 47.03 O HETATM 4220 O HOH A 812 -11.943 0.595 31.698 1.00 58.09 O HETATM 4221 O HOH A 813 15.122 6.885 14.447 1.00 55.65 O HETATM 4222 O HOH A 814 -19.784 -18.275 -0.840 1.00 52.06 O HETATM 4223 O HOH C 801 -11.087 -22.415 68.414 1.00 67.51 O HETATM 4224 O HOH C 802 -20.099 -11.626 53.291 1.00 44.48 O HETATM 4225 O HOH C 803 13.725 5.599 70.570 1.00 47.31 O HETATM 4226 O HOH C 804 17.660 -5.151 32.762 1.00 50.64 O HETATM 4227 O HOH C 805 3.271 -6.565 35.490 1.00 33.61 O HETATM 4228 O HOH C 806 15.665 0.617 29.587 1.00 41.88 O HETATM 4229 O HOH C 807 -4.706 -3.863 58.516 1.00 36.00 O HETATM 4230 O HOH C 808 7.563 -0.960 59.882 1.00 36.02 O HETATM 4231 O HOH C 809 8.016 -6.976 73.167 1.00 38.29 O HETATM 4232 O HOH C 810 6.615 2.092 55.889 1.00 27.59 O HETATM 4233 O HOH C 811 17.445 -8.401 75.754 1.00 43.12 O HETATM 4234 O HOH C 812 24.539 4.010 44.206 1.00 49.98 O HETATM 4235 O HOH C 813 6.292 -7.973 43.232 1.00 30.71 O HETATM 4236 O HOH C 814 -6.029 7.368 48.963 1.00 54.77 O HETATM 4237 O HOH C 815 3.300 -2.488 34.126 1.00 31.22 O HETATM 4238 O HOH C 816 15.967 1.294 72.863 1.00 59.40 O HETATM 4239 O HOH C 817 -2.497 -29.664 56.917 1.00 51.62 O HETATM 4240 O HOH C 818 15.154 -6.934 79.416 1.00 45.17 O CONECT 4149 4150 4153 4165 CONECT 4150 4149 4151 CONECT 4151 4150 4152 CONECT 4152 4151 4166 CONECT 4153 4149 4166 CONECT 4154 4155 4158 CONECT 4155 4154 4156 4157 CONECT 4156 4155 CONECT 4157 4155 4158 CONECT 4158 4154 4157 4159 CONECT 4159 4158 4160 CONECT 4160 4159 4161 4162 CONECT 4161 4160 4165 CONECT 4162 4160 4163 4164 CONECT 4163 4162 CONECT 4164 4162 4165 CONECT 4165 4149 4161 4164 CONECT 4166 4152 4153 4167 CONECT 4167 4166 4168 CONECT 4168 4167 4169 4178 CONECT 4169 4168 4170 CONECT 4170 4169 4171 4176 CONECT 4171 4170 4172 4173 CONECT 4172 4171 CONECT 4173 4171 4174 CONECT 4174 4173 4175 4176 CONECT 4175 4174 CONECT 4176 4170 4174 4177 CONECT 4177 4176 4178 CONECT 4178 4168 4177 CONECT 4179 4180 4183 4195 CONECT 4180 4179 4181 CONECT 4181 4180 4182 CONECT 4182 4181 4196 CONECT 4183 4179 4196 CONECT 4184 4185 4188 CONECT 4185 4184 4186 4187 CONECT 4186 4185 CONECT 4187 4185 4188 CONECT 4188 4184 4187 4189 CONECT 4189 4188 4190 CONECT 4190 4189 4191 4192 CONECT 4191 4190 4195 CONECT 4192 4190 4193 4194 CONECT 4193 4192 CONECT 4194 4192 4195 CONECT 4195 4179 4191 4194 CONECT 4196 4182 4183 4197 CONECT 4197 4196 4198 CONECT 4198 4197 4199 4208 CONECT 4199 4198 4200 CONECT 4200 4199 4201 4206 CONECT 4201 4200 4202 4203 CONECT 4202 4201 CONECT 4203 4201 4204 CONECT 4204 4203 4205 4206 CONECT 4205 4204 CONECT 4206 4200 4204 4207 CONECT 4207 4206 4208 CONECT 4208 4198 4207 MASTER 365 0 2 23 27 0 7 6 4238 2 60 46 END