HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-DEC-14 4XGJ TITLE CRYSTAL STRUCTURE OF A DOMAIN OF UNKNOWN FUNCTION (DUF1537) FROM TITLE 2 PECTOBACTERIUM ATROSEPTICUM (ECA3761), TARGET EFI-511609, APO TITLE 3 STRUCTURE, DOMAIN SWAPPED DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM ATROSEPTICUM; SOURCE 3 ORGANISM_TAXID: 218491; SOURCE 4 STRAIN: SCRI 1043 / ATCC BAA-672; SOURCE 5 GENE: ECA3761; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 2 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,R.TORO,L.L.MORISCO,J.BENACH,S.R.WASSERMAN, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHAMALA,S.CHOWDHURY,J.LAFLEUR,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 5 22-NOV-17 4XGJ 1 JRNL REMARK REVDAT 4 10-AUG-16 4XGJ 1 JRNL REVDAT 3 27-JUL-16 4XGJ 1 JRNL REVDAT 2 13-JUL-16 4XGJ 1 JRNL REVDAT 1 18-FEB-15 4XGJ 0 JRNL AUTH X.ZHANG,M.S.CARTER,M.W.VETTING,B.SAN FRANCISCO,S.ZHAO, JRNL AUTH 2 N.F.AL-OBAIDI,J.O.SOLBIATI,J.J.THIAVILLE,V.DE CRECY-LAGARD, JRNL AUTH 3 M.P.JACOBSON,S.C.ALMO,J.A.GERLT JRNL TITL ASSIGNMENT OF FUNCTION TO A DOMAIN OF UNKNOWN FUNCTION: JRNL TITL 2 DUF1537 IS A NEW KINASE FAMILY IN CATABOLIC PATHWAYS FOR JRNL TITL 3 ACID SUGARS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E4161 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27402745 JRNL DOI 10.1073/PNAS.1605546113 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5411 - 4.4659 0.98 2626 138 0.1687 0.1952 REMARK 3 2 4.4659 - 3.5453 1.00 2602 150 0.1394 0.1597 REMARK 3 3 3.5453 - 3.0974 1.00 2580 142 0.1512 0.1773 REMARK 3 4 3.0974 - 2.8142 1.00 2590 144 0.1542 0.2181 REMARK 3 5 2.8142 - 2.6126 1.00 2557 160 0.1529 0.1953 REMARK 3 6 2.6126 - 2.4585 1.00 2576 130 0.1505 0.2008 REMARK 3 7 2.4585 - 2.3354 1.00 2592 128 0.1468 0.1822 REMARK 3 8 2.3354 - 2.2338 1.00 2551 136 0.1491 0.1914 REMARK 3 9 2.2338 - 2.1478 1.00 2577 116 0.1521 0.1769 REMARK 3 10 2.1478 - 2.0737 1.00 2600 111 0.1561 0.2258 REMARK 3 11 2.0737 - 2.0088 1.00 2550 134 0.1677 0.2016 REMARK 3 12 2.0088 - 1.9514 1.00 2566 126 0.1934 0.2569 REMARK 3 13 1.9514 - 1.9000 1.00 2557 148 0.2170 0.2787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2996 REMARK 3 ANGLE : 1.295 4081 REMARK 3 CHIRALITY : 0.073 505 REMARK 3 PLANARITY : 0.006 531 REMARK 3 DIHEDRAL : 13.741 1062 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.3693 17.6336 5.7507 REMARK 3 T TENSOR REMARK 3 T11: 0.1063 T22: 0.1140 REMARK 3 T33: 0.1561 T12: -0.0032 REMARK 3 T13: -0.0066 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.7234 L22: 2.7810 REMARK 3 L33: 1.8155 L12: 1.0249 REMARK 3 L13: 0.1592 L23: 0.2226 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.0718 S13: 0.1774 REMARK 3 S21: -0.0802 S22: 0.0002 S23: 0.1372 REMARK 3 S31: -0.1510 S32: 0.0496 S33: -0.0190 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1655 1.1143 0.1164 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.1102 REMARK 3 T33: 0.1113 T12: 0.0064 REMARK 3 T13: 0.0229 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 3.0418 L22: 4.4484 REMARK 3 L33: 2.3884 L12: 0.5710 REMARK 3 L13: 0.6552 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0887 S12: 0.0051 S13: -0.2013 REMARK 3 S21: -0.2177 S22: 0.0868 S23: -0.2704 REMARK 3 S31: 0.0746 S32: 0.0966 S33: 0.0055 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.0060 20.9138 28.8643 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.3811 REMARK 3 T33: 0.2538 T12: -0.0195 REMARK 3 T13: 0.0822 T23: -0.0682 REMARK 3 L TENSOR REMARK 3 L11: 1.5493 L22: 3.1862 REMARK 3 L33: 4.2221 L12: 0.3097 REMARK 3 L13: 0.1877 L23: 0.3883 REMARK 3 S TENSOR REMARK 3 S11: -0.0819 S12: 0.5323 S13: -0.2295 REMARK 3 S21: -0.5724 S22: 0.0882 S23: -0.5117 REMARK 3 S31: -0.0623 S32: 0.5211 S33: 0.0445 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35312 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 73.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (46.8 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT); RESERVOIR (MCSG4 (F4); 0.2 M MAGNESIUM CHLORIDE, REMARK 280 0.1 M TRIS PH 8.5, 16 %(W/V) PEG 4000); CRYOPROTECTION (80% REMARK 280 RESERVOIR, 20% GLYCEROL), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.88600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.92200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.88600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.92200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS UNDETERMINED, COULD BE MONOMER OR DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 135.45136 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.10461 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 593 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 GLN A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 HIS A 313A REMARK 465 ASN A 313B REMARK 465 GLU A 313C REMARK 465 ASN A 313D REMARK 465 GLN A 313E REMARK 465 ARG A 313F REMARK 465 PHE A 313G REMARK 465 GLU A 313H REMARK 465 ILE A 313I REMARK 465 ASP A 313J REMARK 465 ALA A 313K REMARK 465 ARG A 313L REMARK 465 CYS A 313M REMARK 465 ARG A 313N REMARK 465 GLU A 313O REMARK 465 LEU A 313P REMARK 465 GLY A 313Q REMARK 465 LEU A 313R REMARK 465 SER A 313S REMARK 465 ARG A 313T REMARK 465 ASP A 356 REMARK 465 SER A 357 REMARK 465 LEU A 358 REMARK 465 ALA A 359 REMARK 465 ALA A 360 REMARK 465 ASP A 361 REMARK 465 GLY A 362 REMARK 465 THR A 363 REMARK 465 ARG A 364 REMARK 465 ARG A 365 REMARK 465 ARG A 366 REMARK 465 VAL A 440 REMARK 465 SER A 441 REMARK 465 GLU A 442 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 656 O HOH A 774 2.10 REMARK 500 O HOH A 695 O HOH A 770 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG A 138 O GLY A 387 2646 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 138 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 148 -149.91 73.08 REMARK 500 LYS A 150 -36.18 -138.40 REMARK 500 THR A 151 77.13 -151.54 REMARK 500 SER A 227 -150.17 -113.90 REMARK 500 CYS A 400 8.74 -157.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 695 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 770 DISTANCE = 5.82 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-511609 RELATED DB: TARGETTRACK DBREF 4XGJ A 1 442 UNP Q6D0N7 Q6D0N7_PECAS 1 442 SEQADV 4XGJ MSE A -21 UNP Q6D0N7 INITIATING METHIONINE SEQADV 4XGJ HIS A -20 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ HIS A -19 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ HIS A -18 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ HIS A -17 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ HIS A -16 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ HIS A -15 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ SER A -14 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ SER A -13 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ GLY A -12 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ VAL A -11 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ ASP A -10 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ LEU A -9 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ GLY A -8 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ THR A -7 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ GLU A -6 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ ASN A -5 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ LEU A -4 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ TYR A -3 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ PHE A -2 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ GLN A -1 UNP Q6D0N7 EXPRESSION TAG SEQADV 4XGJ SER A 0 UNP Q6D0N7 EXPRESSION TAG SEQRES 1 A 464 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 464 GLY THR GLU ASN LEU TYR PHE GLN SER MSE PRO ASN VAL SEQRES 3 A 464 GLN GLN SER ALA GLY GLN VAL LEU VAL VAL ALA ASP ASP SEQRES 4 A 464 PHE THR GLY ALA ASN ASP ALA GLY VAL GLY LEU ALA GLN SEQRES 5 A 464 HIS GLY ALA ARG VAL SER VAL VAL PHE ASP VAL ASN THR SEQRES 6 A 464 LEU HIS ALA ASP LEU LEU GLY ASP ALA VAL VAL ILE ASN SEQRES 7 A 464 THR ASP SER ARG ALA ALA ARG ASP ASP VAL ALA SER GLN SEQRES 8 A 464 ARG THR ALA ALA ALA VAL ALA ALA TRP GLN ALA VAL GLY SEQRES 9 A 464 GLY LYS GLY TRP ILE ILE LYS LYS ILE ASP SER THR LEU SEQRES 10 A 464 ARG GLY ASN LEU GLY ALA GLU VAL ALA ALA ALA LEU SER SEQRES 11 A 464 ALA ALA ASP VAL PRO VAL ALA LEU ILE ALA ALA ALA SER SEQRES 12 A 464 PRO THR LEU GLY ARG VAL THR ARG GLN GLY GLU VAL TRP SEQRES 13 A 464 VAL ASN GLY ARG ARG LEU THR ASP THR GLU PHE ALA SER SEQRES 14 A 464 ASP PRO LYS THR PRO VAL THR SER ALA SER ILE ALA ALA SEQRES 15 A 464 ARG LEU ALA GLU GLN THR ALA LEU PRO VAL ALA GLU ILE SEQRES 16 A 464 HIS LEU ASP GLU VAL ARG GLN ALA ASN LEU ALA HIS ARG SEQRES 17 A 464 LEU GLN GLN LEU ALA ASP GLU GLY THR ARG LEU ILE ILE SEQRES 18 A 464 LEU ASP THR ASP VAL GLN ASP ASP LEU THR HIS ILE VAL SEQRES 19 A 464 ASN ALA ALA ARG ALA LEU PRO PHE ARG PRO LEU LEU VAL SEQRES 20 A 464 GLY SER ALA GLY LEU SER ASP ALA LEU ALA THR ALA GLN SEQRES 21 A 464 ASP PHE THR ARG LYS THR GLU LYS PRO LEU LEU ALA VAL SEQRES 22 A 464 VAL GLY SER MSE SER ASP ILE ALA GLN LYS GLN ILE ALA SEQRES 23 A 464 ALA ALA ARG LEU ARG SER ASP VAL THR LEU VAL GLU ILE SEQRES 24 A 464 ASP ILE ASN ALA LEU PHE SER PRO ASP SER SER THR VAL SEQRES 25 A 464 MSE ALA SER GLN CYS GLU ASP ALA LEU LYS ALA LEU THR SEQRES 26 A 464 ASN GLY HIS HIS CYS ILE ILE ARG THR CYS HIS ASN GLU SEQRES 27 A 464 ASN GLN ARG PHE GLU ILE ASP ALA ARG CYS ARG GLU LEU SEQRES 28 A 464 GLY LEU SER ARG GLN GLN LEU GLY GLU THR ILE SER HIS SEQRES 29 A 464 TYR LEU GLY GLU LEU THR ARG SER ILE VAL GLN ALA LEU SEQRES 30 A 464 ASP SER LEU ALA ALA ASP GLY THR ARG ARG ARG LEU PRO SEQRES 31 A 464 GLY GLY LEU TYR LEU SER GLY GLY ASP ILE ALA ILE ALA SEQRES 32 A 464 VAL ALA THR ALA LEU GLY ALA THR GLY PHE GLN ILE LYS SEQRES 33 A 464 GLY GLN ILE ALA SER CYS VAL PRO TRP GLY TYR LEU LEU SEQRES 34 A 464 ASN SER ILE VAL GLY MSE THR PRO VAL MSE THR LYS ALA SEQRES 35 A 464 GLY GLY PHE GLY ASN GLU THR THR LEU LEU ASP VAL LEU SEQRES 36 A 464 ARG PHE ILE GLU GLU LYS VAL SER GLU MODRES 4XGJ MSE A 255 MET MODIFIED RESIDUE MODRES 4XGJ MSE A 291 MET MODIFIED RESIDUE MODRES 4XGJ MSE A 413 MET MODIFIED RESIDUE MODRES 4XGJ MSE A 417 MET MODIFIED RESIDUE HET MSE A 255 16 HET MSE A 291 17 HET MSE A 413 16 HET MSE A 417 17 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 HOH *334(H2 O) HELIX 1 AA1 ASP A 17 HIS A 31 1 15 HELIX 2 AA2 ASP A 40 LEU A 44 5 5 HELIX 3 AA3 HIS A 45 LEU A 49 5 5 HELIX 4 AA4 ARG A 63 VAL A 81 1 19 HELIX 5 AA5 ASN A 98 ASP A 111 1 14 HELIX 6 AA6 SER A 121 LEU A 124 5 4 HELIX 7 AA7 THR A 141 SER A 147 5 7 HELIX 8 AA8 SER A 157 GLU A 164 1 8 HELIX 9 AA9 HIS A 174 ARG A 179 1 6 HELIX 10 AB1 ASN A 182 GLU A 193 1 12 HELIX 11 AB2 VAL A 204 ARG A 216 1 13 HELIX 12 AB3 SER A 227 GLN A 238 1 12 HELIX 13 AB4 SER A 256 LEU A 268 1 13 HELIX 14 AB5 ASN A 280 PHE A 283 5 4 HELIX 15 AB6 SER A 284 PRO A 285 5 2 HELIX 16 AB7 ASP A 286 ASN A 304 1 19 HELIX 17 AB8 GLN A 334 LEU A 354 1 21 HELIX 18 AB9 GLY A 375 LEU A 386 1 12 HELIX 19 AC1 THR A 427 LYS A 439 1 13 SHEET 1 AA1 8 VAL A 35 VAL A 37 0 SHEET 2 AA1 8 ALA A 52 ASN A 56 1 O VAL A 54 N SER A 36 SHEET 3 AA1 8 GLN A 10 ALA A 15 1 N ALA A 15 O ILE A 55 SHEET 4 AA1 8 GLY A 85 LYS A 90 1 O ILE A 88 N LEU A 12 SHEET 5 AA1 8 LEU A 223 GLY A 226 1 O LEU A 224 N LYS A 89 SHEET 6 AA1 8 ALA A 115 ALA A 118 1 N LEU A 116 O LEU A 223 SHEET 7 AA1 8 LEU A 197 LEU A 200 1 O ILE A 198 N ILE A 117 SHEET 8 AA1 8 VAL A 170 ILE A 173 1 N ILE A 173 O ILE A 199 SHEET 1 AA2 3 ARG A 126 ARG A 129 0 SHEET 2 AA2 3 GLU A 132 VAL A 135 -1 O TRP A 134 N VAL A 127 SHEET 3 AA2 3 ARG A 138 ARG A 139 -1 O ARG A 138 N VAL A 135 SHEET 1 AA3 7 VAL A 272 ASP A 278 0 SHEET 2 AA3 7 HIS A 307 CYS A 313 1 O HIS A 307 N THR A 273 SHEET 3 AA3 7 LEU A 248 VAL A 252 1 N ALA A 250 O ILE A 310 SHEET 4 AA3 7 GLY A 370 SER A 374 1 O TYR A 372 N VAL A 251 SHEET 5 AA3 7 PRO A 415 LYS A 419 1 O MSE A 417 N LEU A 371 SHEET 6 AA3 7 VAL A 401 LEU A 407 -1 N GLY A 404 O VAL A 416 SHEET 7 AA3 7 GLY A 390 ILE A 397 -1 N GLN A 392 O TYR A 405 LINK C SER A 254 N MSE A 255 1555 1555 1.33 LINK C MSE A 255 N SER A 256 1555 1555 1.33 LINK C VAL A 290 N MSE A 291 1555 1555 1.33 LINK C MSE A 291 N ALA A 292 1555 1555 1.33 LINK C GLY A 412 N MSE A 413 1555 1555 1.34 LINK C MSE A 413 N THR A 414 1555 1555 1.31 LINK C VAL A 416 N MSE A 417 1555 1555 1.32 LINK C MSE A 417 N THR A 418 1555 1555 1.34 CISPEP 1 GLY A 50 ASP A 51 0 3.09 CISPEP 2 ASP A 148 PRO A 149 0 -13.11 CISPEP 3 LEU A 367 PRO A 368 0 -3.36 CISPEP 4 SER A 374 GLY A 375 0 2.30 CRYST1 153.772 47.844 63.792 90.00 106.69 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006503 0.000000 0.001949 0.00000 SCALE2 0.000000 0.020901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016365 0.00000