HEADER FLUORESCENT PROTEIN 03-JAN-15 4XGY TITLE GFP BASED ANTIBODY (FLUOROBODY) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN, MAB LCDR3, GREEN FLUORESCENT COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: CHIMERA PROTEIN OF RESIDUES 2-173 FROM GREEN COMPND 8 FLUORESCENT PROTEIN, MAB LCDR3, RESIDUES 174-238 FROM GREEN COMPND 9 FLUORESCENT PROTEIN, AND C-TERMINAL EXPRESSION TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, VIBRIO PARAHAEMOLYTICUS, SOURCE 3 SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_COMMON: JELLYFISH; SOURCE 5 ORGANISM_TAXID: 6100, 670, 32630; SOURCE 6 GENE: GFP; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEPI KEYWDS FLUOROBODY, GFP, CDR3, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.SHI,Y.G.CHEN,S.H.WANG REVDAT 4 15-NOV-23 4XGY 1 ATOM REVDAT 3 08-NOV-23 4XGY 1 SOURCE REMARK DBREF SEQADV REVDAT 3 2 1 HETSYN REVDAT 2 22-JUL-15 4XGY 1 JRNL REVDAT 1 01-JUL-15 4XGY 0 JRNL AUTH Y.CHEN,X.HUANG,R.WANG,S.WANG,N.SHI JRNL TITL THE STRUCTURE OF A GFP-BASED ANTIBODY (FLUOROBODY) TO TLH, A JRNL TITL 2 TOXIN FROM VIBRIO PARAHAEMOLYTICUS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 913 2015 JRNL REFN ESSN 2053-230X JRNL PMID 26144238 JRNL DOI 10.1107/S2053230X15008845 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 42094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.6820 - 3.5991 0.92 2890 135 0.1533 0.1611 REMARK 3 2 3.5991 - 2.8573 1.00 2953 138 0.1378 0.1519 REMARK 3 3 2.8573 - 2.4963 1.00 2942 122 0.1421 0.1539 REMARK 3 4 2.4963 - 2.2682 1.00 2858 173 0.1366 0.1807 REMARK 3 5 2.2682 - 2.1056 1.00 2869 158 0.1351 0.1693 REMARK 3 6 2.1056 - 1.9815 1.00 2852 147 0.1400 0.1539 REMARK 3 7 1.9815 - 1.8823 1.00 2864 149 0.1420 0.1621 REMARK 3 8 1.8823 - 1.8003 1.00 2857 141 0.1473 0.1718 REMARK 3 9 1.8003 - 1.7310 1.00 2852 140 0.1517 0.1700 REMARK 3 10 1.7310 - 1.6713 1.00 2853 126 0.1474 0.1833 REMARK 3 11 1.6713 - 1.6191 1.00 2846 125 0.1549 0.1917 REMARK 3 12 1.6191 - 1.5728 1.00 2846 130 0.1588 0.1834 REMARK 3 13 1.5728 - 1.5314 1.00 2819 151 0.1599 0.1946 REMARK 3 14 1.5314 - 1.4940 1.00 2797 161 0.1674 0.2116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2069 REMARK 3 ANGLE : 1.335 2797 REMARK 3 CHIRALITY : 0.072 299 REMARK 3 PLANARITY : 0.006 367 REMARK 3 DIHEDRAL : 14.758 778 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1805 10.1732 -5.1016 REMARK 3 T TENSOR REMARK 3 T11: 0.0864 T22: 0.0627 REMARK 3 T33: 0.1096 T12: -0.0029 REMARK 3 T13: 0.0142 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.1725 L22: 1.5393 REMARK 3 L33: 2.0028 L12: 0.2703 REMARK 3 L13: -0.0428 L23: -0.1059 REMARK 3 S TENSOR REMARK 3 S11: 0.0708 S12: -0.0618 S13: 0.0056 REMARK 3 S21: 0.0304 S22: -0.0978 S23: 0.0980 REMARK 3 S31: 0.1710 S32: -0.0368 S33: 0.0058 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4222 -9.9412 10.4412 REMARK 3 T TENSOR REMARK 3 T11: 0.2232 T22: 0.2035 REMARK 3 T33: 0.2060 T12: -0.0714 REMARK 3 T13: -0.0020 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 3.2427 L22: 5.8268 REMARK 3 L33: 7.1675 L12: -1.5126 REMARK 3 L13: -0.0367 L23: -6.0255 REMARK 3 S TENSOR REMARK 3 S11: 0.1002 S12: -0.5195 S13: -0.2359 REMARK 3 S21: 0.1309 S22: -0.0133 S23: -0.0038 REMARK 3 S31: -0.0902 S32: 0.2837 S33: -0.0775 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2907 8.7662 -8.2929 REMARK 3 T TENSOR REMARK 3 T11: 0.1031 T22: 0.0624 REMARK 3 T33: 0.1080 T12: 0.0094 REMARK 3 T13: 0.0156 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.9485 L22: 1.0427 REMARK 3 L33: 2.1274 L12: -0.3735 REMARK 3 L13: 0.1155 L23: -0.3841 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: 0.0194 S13: 0.0339 REMARK 3 S21: -0.1134 S22: -0.0824 S23: -0.0287 REMARK 3 S31: 0.2274 S32: 0.1483 S33: -0.0101 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : IMOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42096 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.494 REMARK 200 RESOLUTION RANGE LOW (A) : 31.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 23.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 264.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2B3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG400, 0.1M HEPES, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.95000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.67500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.42500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.67500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.47500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.67500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.67500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 94.42500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.67500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.67500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.47500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 70 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 427 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 508 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 622 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 LYS A -5 REMARK 465 ALA A -4 REMARK 465 THR A -3 REMARK 465 LYS A -2 REMARK 465 LEU A -1 REMARK 465 VAL A 0 REMARK 465 PRO A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 244 REMARK 465 GLY A 245 REMARK 465 MET A 246 REMARK 465 ASP A 247 REMARK 465 GLU A 248 REMARK 465 LEU A 249 REMARK 465 TYR A 250 REMARK 465 LYS A 251 REMARK 465 GLY A 252 REMARK 465 GLY A 253 REMARK 465 PRO A 254 REMARK 465 GLY A 255 REMARK 465 ILE A 256 REMARK 465 LYS A 257 REMARK 465 ALA A 258 REMARK 465 ALA A 259 REMARK 465 ALA A 260 REMARK 465 GLY A 261 REMARK 465 SER A 262 REMARK 465 GLY A 263 REMARK 465 TYR A 264 REMARK 465 PRO A 265 REMARK 465 TYR A 266 REMARK 465 ASP A 267 REMARK 465 VAL A 268 REMARK 465 PRO A 269 REMARK 465 ASP A 270 REMARK 465 TYR A 271 REMARK 465 ALA A 272 REMARK 465 GLY A 273 REMARK 465 SER A 274 REMARK 465 GLY A 275 REMARK 465 GLU A 276 REMARK 465 GLN A 277 REMARK 465 LYS A 278 REMARK 465 LEU A 279 REMARK 465 ILE A 280 REMARK 465 SER A 281 REMARK 465 GLU A 282 REMARK 465 GLU A 283 REMARK 465 ASP A 284 REMARK 465 LEU A 285 REMARK 465 ASN A 286 REMARK 465 GLY A 287 REMARK 465 ALA A 288 REMARK 465 ALA A 289 REMARK 465 GLY A 290 REMARK 465 SER A 291 REMARK 465 GLY A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 4 O HOH A 401 1.94 REMARK 500 OE1 GLU A 5 O HOH A 402 2.00 REMARK 500 O HOH A 420 O HOH A 635 2.08 REMARK 500 OE1 GLU A 17 NH1 ARG A 122 2.11 REMARK 500 O HOH A 635 O HOH A 695 2.12 REMARK 500 O HOH A 683 O HOH A 686 2.12 REMARK 500 O HOH A 494 O HOH A 632 2.14 REMARK 500 NZ LYS A 52 O HOH A 403 2.16 REMARK 500 O HOH A 611 O HOH A 628 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE22 GLN A 217 H LEU A 220 7555 1.29 REMARK 500 O HOH A 637 O HOH A 686 3554 2.12 REMARK 500 OD2 ASP A 19 OH TYR A 178 3454 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -157.96 -152.85 REMARK 500 GLN A 177 -41.19 65.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 172 ASP A 173 141.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 703 DISTANCE = 6.18 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE5 A 301 REMARK 610 PE5 A 302 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B3P RELATED DB: PDB DBREF 4XGY A 2 173 UNP P42212 GFP_AEQVI 2 173 DBREF 4XGY A 175 183 PDB 4XGY 4XGY 175 183 DBREF 4XGY A 187 251 UNP P42212 GFP_AEQVI 174 238 DBREF 4XGY A 252 298 PDB 4XGY 4XGY 252 298 SEQADV 4XGY MET A -6 UNP P42212 EXPRESSION TAG SEQADV 4XGY LYS A -5 UNP P42212 EXPRESSION TAG SEQADV 4XGY ALA A -4 UNP P42212 EXPRESSION TAG SEQADV 4XGY THR A -3 UNP P42212 EXPRESSION TAG SEQADV 4XGY LYS A -2 UNP P42212 EXPRESSION TAG SEQADV 4XGY LEU A -1 UNP P42212 EXPRESSION TAG SEQADV 4XGY VAL A 0 UNP P42212 EXPRESSION TAG SEQADV 4XGY PRO A 1 UNP P42212 EXPRESSION TAG SEQADV 4XGY ARG A 30 UNP P42212 SER 30 ENGINEERED MUTATION SEQADV 4XGY ASN A 39 UNP P42212 TYR 39 ENGINEERED MUTATION SEQADV 4XGY LEU A 64 UNP P42212 PHE 64 ENGINEERED MUTATION SEQADV 4XGY CRO A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 4XGY CRO A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 4XGY CRO A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4XGY ARG A 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 4XGY SER A 99 UNP P42212 PHE 99 ENGINEERED MUTATION SEQADV 4XGY THR A 105 UNP P42212 ASN 105 ENGINEERED MUTATION SEQADV 4XGY PHE A 145 UNP P42212 TYR 145 ENGINEERED MUTATION SEQADV 4XGY THR A 153 UNP P42212 MET 153 ENGINEERED MUTATION SEQADV 4XGY ALA A 163 UNP P42212 VAL 163 ENGINEERED MUTATION SEQADV 4XGY GLY A 174 UNP P42212 LINKER SEQADV 4XGY THR A 184 UNP P42212 LINKER SEQADV 4XGY LEU A 185 UNP P42212 LINKER SEQADV 4XGY GLN A 186 UNP P42212 LINKER SEQADV 4XGY VAL A 219 UNP P42212 ALA 206 ENGINEERED MUTATION SEQRES 1 A 303 MET LYS ALA THR LYS LEU VAL PRO SER LYS GLY GLU GLU SEQRES 2 A 303 LEU PHE THR GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP SEQRES 3 A 303 GLY ASP VAL ASN GLY HIS LYS PHE SER VAL ARG GLY GLU SEQRES 4 A 303 GLY GLU GLY ASP ALA THR ASN GLY LYS LEU THR LEU LYS SEQRES 5 A 303 PHE ILE CYS THR THR GLY LYS LEU PRO VAL PRO TRP PRO SEQRES 6 A 303 THR LEU VAL THR THR LEU CRO VAL GLN CYS PHE SER ARG SEQRES 7 A 303 TYR PRO ASP HIS MET LYS ARG HIS ASP PHE PHE LYS SER SEQRES 8 A 303 ALA MET PRO GLU GLY TYR VAL GLN GLU ARG THR ILE SER SEQRES 9 A 303 PHE LYS ASP ASP GLY THR TYR LYS THR ARG ALA GLU VAL SEQRES 10 A 303 LYS PHE GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU SEQRES 11 A 303 LYS GLY ILE ASP PHE LYS GLU ASP GLY ASN ILE LEU GLY SEQRES 12 A 303 HIS LYS LEU GLU TYR ASN PHE ASN SER HIS ASN VAL TYR SEQRES 13 A 303 ILE THR ALA ASP LYS GLN LYS ASN GLY ILE LYS ALA ASN SEQRES 14 A 303 PHE LYS ILE ARG HIS ASN ILE GLU ASP GLY SER HIS GLN SEQRES 15 A 303 TYR HIS ARG SER PRO LYS THR LEU GLN GLY SER VAL GLN SEQRES 16 A 303 LEU ALA ASP HIS TYR GLN GLN ASN THR PRO ILE GLY ASP SEQRES 17 A 303 GLY PRO VAL LEU LEU PRO ASP ASN HIS TYR LEU SER THR SEQRES 18 A 303 GLN SER VAL LEU SER LYS ASP PRO ASN GLU LYS ARG ASP SEQRES 19 A 303 HIS MET VAL LEU LEU GLU PHE VAL THR ALA ALA GLY ILE SEQRES 20 A 303 THR HIS GLY MET ASP GLU LEU TYR LYS GLY GLY PRO GLY SEQRES 21 A 303 ILE LYS ALA ALA ALA GLY SER GLY TYR PRO TYR ASP VAL SEQRES 22 A 303 PRO ASP TYR ALA GLY SER GLY GLU GLN LYS LEU ILE SER SEQRES 23 A 303 GLU GLU ASP LEU ASN GLY ALA ALA GLY SER GLY HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS HET CRO A 66 37 HET PE5 A 301 30 HET PE5 A 302 30 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL HETSYN CRO PEPTIDE DERIVED CHROMOPHORE HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE HETSYN 3 PE5 GLYCOL PEG400 FORMUL 1 CRO C15 H17 N3 O5 FORMUL 2 PE5 2(C18 H38 O9) FORMUL 4 HOH *303(H2 O) HELIX 1 AA1 GLY A 4 THR A 9 5 6 HELIX 2 AA2 ALA A 37 ASN A 39 5 3 HELIX 3 AA3 PRO A 56 VAL A 61 5 6 HELIX 4 AA4 VAL A 68 SER A 72 5 5 HELIX 5 AA5 PRO A 75 HIS A 81 5 7 HELIX 6 AA6 ASP A 82 ALA A 87 1 6 HELIX 7 AA7 LYS A 156 ASN A 159 5 4 HELIX 8 AA8 THR A 184 SER A 188 1 5 SHEET 1 AA112 VAL A 12 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 AA112 HIS A 230 ALA A 240 -1 O MET A 231 N PHE A 46 SHEET 5 AA112 HIS A 212 SER A 221 -1 N SER A 215 O THR A 238 SHEET 6 AA112 HIS A 148 ASP A 155 -1 N HIS A 148 O THR A 216 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 AA112 VAL A 189 PRO A 200 -1 O HIS A 194 N PHE A 165 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 199 SHEET 10 AA112 THR A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 12 VAL A 22 1 N ASP A 21 O GLY A 127 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.40 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.39 CISPEP 1 MET A 88 PRO A 89 0 9.33 SITE 1 AC1 6 ASN A 39 LYS A 41 LEU A 234 PHE A 236 SITE 2 AC1 6 HOH A 406 HOH A 592 SITE 1 AC2 6 THR A 9 GLY A 51 LYS A 52 LYS A 227 SITE 2 AC2 6 ASP A 229 HOH A 538 CRYST1 63.350 63.350 125.900 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015785 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007943 0.00000