HEADER STRUCTURAL PROTEIN 06-JAN-15 4XHP TITLE BACILLUS THURINGIENSIS PARM HYBRID PROTEIN WITH ADP, CONTAINING TWO TITLE 2 PARM MUTANTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARM HYBRID FUSION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THURINGIENSIS SEROVAR KURSTAKI STR. SOURCE 3 YBT-1520; SOURCE 4 ORGANISM_TAXID: 570416; SOURCE 5 GENE: YBT1520_33546; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSY5, MODIFIED KEYWDS STRUCTURAL PROTEIN, BACTERIAL ACTIN-LIKE PROTEIN, BACTERIAL KEYWDS 2 CYTOSKELETON EXPDTA X-RAY DIFFRACTION AUTHOR S.M.JIANG,R.C.ROBINSON REVDAT 1 09-MAR-16 4XHP 0 JRNL AUTH S.M.JIANG,A.NARITA,D.POPP,U.GHOSHDASTIDER,L.J.LEE, JRNL AUTH 2 R.SRINIVASAN,M.K.BALASUBRAMANIAN,T.ODA,F.J.KOH,M.LARSSON, JRNL AUTH 3 R.C.ROBINSON JRNL TITL A NOVEL PLASMID-SEGREGATING ACTIN-LIKE PROTEIN FROM BACILLUS JRNL TITL 2 THURINGIENSIS FORMS DYNAMICALLY UNSTABLE TUBULES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.3 REMARK 3 NUMBER OF REFLECTIONS : 12760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.7510 - 6.5991 0.96 1530 171 0.2036 0.2520 REMARK 3 2 6.5991 - 5.2495 0.96 1487 165 0.2446 0.3185 REMARK 3 3 5.2495 - 4.5893 0.96 1474 164 0.2088 0.2542 REMARK 3 4 4.5893 - 4.1712 0.95 1479 165 0.2118 0.2726 REMARK 3 5 4.1712 - 3.8731 0.94 1450 159 0.2307 0.2966 REMARK 3 6 3.8731 - 3.6453 0.93 1424 163 0.2476 0.3093 REMARK 3 7 3.6453 - 3.4631 0.79 1196 134 0.2723 0.3407 REMARK 3 8 3.4631 - 3.3126 0.56 865 100 0.2808 0.3401 REMARK 3 9 3.3126 - 3.2000 0.37 569 65 0.2854 0.3287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5821 REMARK 3 ANGLE : 1.307 7840 REMARK 3 CHIRALITY : 0.054 875 REMARK 3 PLANARITY : 0.005 1004 REMARK 3 DIHEDRAL : 16.534 2184 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XHP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : QUANTUM-315 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15010 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 5.0, 5% POLY REMARK 280 -GAMMA-GLUTAMIC ACID POLYMER, 30% PEG 400, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.63750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ASP A 51 REMARK 465 LEU A 52 REMARK 465 LYS A 53 REMARK 465 SER A 54 REMARK 465 ALA A 55 REMARK 465 PRO A 56 REMARK 465 SER A 57 REMARK 465 LYS A 58 REMARK 465 LYS A 59 REMARK 465 ASN A 60 REMARK 465 ASP A 61 REMARK 465 TYR A 62 REMARK 465 VAL A 63 REMARK 465 ASN A 64 REMARK 465 GLU A 65 REMARK 465 THR A 107 REMARK 465 VAL A 108 REMARK 465 ASP A 109 REMARK 465 GLU A 110 REMARK 465 MET A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 THR A 114 REMARK 465 GLU A 115 REMARK 465 ASP A 116 REMARK 465 LYS A 117 REMARK 465 PHE A 118 REMARK 465 SER A 119 REMARK 465 ILE A 156 REMARK 465 GLU A 157 REMARK 465 ASP A 158 REMARK 465 TYR A 159 REMARK 465 LYS A 160 REMARK 465 LEU A 161 REMARK 465 ARG A 162 REMARK 465 VAL A 221 REMARK 465 GLU A 222 REMARK 465 GLY A 223 REMARK 465 MET A 224 REMARK 465 ASP A 225 REMARK 465 GLU A 281 REMARK 465 ASN A 282 REMARK 465 GLU A 283 REMARK 465 ILE A 284 REMARK 465 LEU A 285 REMARK 465 LYS A 286 REMARK 465 SER A 287 REMARK 465 ASP A 288 REMARK 465 ASP A 289 REMARK 465 THR A 290 REMARK 465 ASP A 291 REMARK 465 GLU A 292 REMARK 465 ILE A 293 REMARK 465 GLU A 294 REMARK 465 SER A 295 REMARK 465 LYS A 418 REMARK 465 GLU A 419 REMARK 465 GLY A 420 REMARK 465 VAL A 421 REMARK 465 GLU A 422 REMARK 465 ALA A 423 REMARK 465 GLY A 424 REMARK 465 SER A 425 REMARK 465 GLY A 426 REMARK 465 SER A 427 REMARK 465 GLY A 428 REMARK 465 SER A 429 REMARK 465 GLY A 430 REMARK 465 SER A 431 REMARK 465 GLY A 432 REMARK 465 SER A 433 REMARK 465 GLY A 434 REMARK 465 SER A 435 REMARK 465 GLY A 436 REMARK 465 SER A 437 REMARK 465 GLY A 438 REMARK 465 SER A 439 REMARK 465 GLY A 440 REMARK 465 SER A 441 REMARK 465 GLY A 442 REMARK 465 SER A 443 REMARK 465 MET A 444 REMARK 465 VAL A 445 REMARK 465 ASP A 494 REMARK 465 LEU A 495 REMARK 465 LYS A 496 REMARK 465 SER A 497 REMARK 465 ALA A 498 REMARK 465 PRO A 499 REMARK 465 SER A 500 REMARK 465 LYS A 501 REMARK 465 LYS A 502 REMARK 465 ASN A 503 REMARK 465 ASP A 504 REMARK 465 TYR A 505 REMARK 465 VAL A 506 REMARK 465 ASN A 507 REMARK 465 GLU A 508 REMARK 465 ASP A 552 REMARK 465 GLU A 553 REMARK 465 MET A 554 REMARK 465 GLY A 555 REMARK 465 LYS A 556 REMARK 465 THR A 557 REMARK 465 GLU A 558 REMARK 465 ASP A 559 REMARK 465 LYS A 560 REMARK 465 PHE A 561 REMARK 465 SER A 562 REMARK 465 PRO A 598 REMARK 465 ILE A 599 REMARK 465 GLU A 600 REMARK 465 ASP A 601 REMARK 465 TYR A 602 REMARK 465 LYS A 603 REMARK 465 LEU A 604 REMARK 465 ARG A 605 REMARK 465 GLY A 606 REMARK 465 GLU A 607 REMARK 465 MET A 667 REMARK 465 ASP A 668 REMARK 465 ALA A 669 REMARK 465 GLU A 670 REMARK 465 ILE A 671 REMARK 465 LYS A 697 REMARK 465 LYS A 698 REMARK 465 LEU A 728 REMARK 465 LYS A 729 REMARK 465 SER A 730 REMARK 465 PHE A 731 REMARK 465 MET A 732 REMARK 465 THR A 733 REMARK 465 ASP A 734 REMARK 465 GLU A 735 REMARK 465 LYS A 861 REMARK 465 GLU A 862 REMARK 465 GLY A 863 REMARK 465 VAL A 864 REMARK 465 GLU A 865 REMARK 465 ALA A 866 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 831 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 618 N ILE A 634 2.07 REMARK 500 C GLY A 84 CB ARG A 87 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 86 CB - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 ALA A 86 N - CA - CB ANGL. DEV. = -9.5 DEGREES REMARK 500 GLY A 216 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 GLU A 217 N - CA - CB ANGL. DEV. = -27.1 DEGREES REMARK 500 ILE A 228 CB - CA - C ANGL. DEV. = 14.3 DEGREES REMARK 500 GLY A 229 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 8 -3.29 70.88 REMARK 500 ASN A 9 40.97 75.56 REMARK 500 ASN A 28 -154.32 -91.28 REMARK 500 ASN A 32 -157.85 -91.84 REMARK 500 ASP A 83 0.83 -60.27 REMARK 500 ARG A 103 156.79 -49.62 REMARK 500 LYS A 123 -39.88 58.52 REMARK 500 GLU A 164 5.38 -150.78 REMARK 500 TYR A 184 43.82 -103.63 REMARK 500 GLU A 185 102.96 -53.52 REMARK 500 ASN A 194 -71.14 -93.08 REMARK 500 ASP A 195 -165.22 -126.93 REMARK 500 ASN A 199 29.39 40.23 REMARK 500 GLU A 201 -15.51 -48.59 REMARK 500 ASN A 215 -62.39 74.42 REMARK 500 GLU A 227 -8.29 81.99 REMARK 500 ILE A 228 -162.65 -101.71 REMARK 500 ASP A 249 -116.31 50.53 REMARK 500 LYS A 254 30.11 -83.71 REMARK 500 ASP A 261 37.05 -96.36 REMARK 500 PHE A 279 20.19 -75.19 REMARK 500 GLN A 447 -145.82 31.39 REMARK 500 MET A 448 -53.82 -144.23 REMARK 500 LEU A 449 123.08 55.40 REMARK 500 SER A 450 68.78 -152.19 REMARK 500 ASN A 452 37.68 -171.18 REMARK 500 ASP A 459 78.57 -105.11 REMARK 500 ILE A 463 -53.78 -123.92 REMARK 500 THR A 483 67.59 -68.74 REMARK 500 GLU A 511 52.44 -146.38 REMARK 500 ALA A 538 11.67 -67.15 REMARK 500 THR A 550 76.62 -119.80 REMARK 500 ASN A 565 -147.12 51.01 REMARK 500 LYS A 566 -58.81 58.80 REMARK 500 GLU A 588 142.74 174.22 REMARK 500 GLN A 609 171.55 51.38 REMARK 500 GLU A 612 54.84 -115.90 REMARK 500 TYR A 615 -152.72 -64.32 REMARK 500 ASP A 624 -163.03 -164.06 REMARK 500 TYR A 627 42.49 -107.13 REMARK 500 ASN A 658 -60.55 59.66 REMARK 500 ASP A 704 47.16 -86.68 REMARK 500 LEU A 705 51.73 -95.25 REMARK 500 MET A 723 55.87 -94.86 REMARK 500 ASN A 725 -32.26 66.74 REMARK 500 GLU A 726 -30.02 -150.39 REMARK 500 GLU A 737 -85.33 -138.15 REMARK 500 VAL A 751 -65.11 -90.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 251 LEU A 252 -149.80 REMARK 500 LYS A 394 ASN A 395 146.89 REMARK 500 GLU A 514 LEU A 515 136.60 REMARK 500 GLU A 587 GLU A 588 136.21 REMARK 500 GLN A 609 ILE A 610 120.28 REMARK 500 GLU A 612 MET A 613 131.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 900 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 236 OD1 REMARK 620 2 ADP A 901 O2B 88.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 679 OD2 REMARK 620 2 ADP A 903 O1B 124.5 REMARK 620 3 ADP A 903 O2A 112.2 73.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 903 DBREF1 4XHP A 1 443 UNP A0A024E1G1_BACTK DBREF2 4XHP A A0A024E1G1 1 443 DBREF1 4XHP A 444 866 UNP A0A024E1G1_BACTK DBREF2 4XHP A A0A024E1G1 1 423 SEQADV 4XHP ASP A 288 UNP A0A024E1G PHE 288 ENGINEERED MUTATION SEQADV 4XHP ASP A 289 UNP A0A024E1G MET 289 ENGINEERED MUTATION SEQADV 4XHP ASP A 331 UNP A0A024E1G PRO 331 ENGINEERED MUTATION SEQADV 4XHP GLY A 424 UNP A0A024E1G 424 LINKER SEQADV 4XHP SER A 425 UNP A0A024E1G 425 LINKER SEQADV 4XHP GLY A 426 UNP A0A024E1G 426 LINKER SEQADV 4XHP SER A 427 UNP A0A024E1G 427 LINKER SEQADV 4XHP GLY A 428 UNP A0A024E1G 428 LINKER SEQADV 4XHP SER A 429 UNP A0A024E1G 429 LINKER SEQADV 4XHP GLY A 430 UNP A0A024E1G 430 LINKER SEQADV 4XHP SER A 431 UNP A0A024E1G 431 LINKER SEQADV 4XHP GLY A 432 UNP A0A024E1G 432 LINKER SEQADV 4XHP SER A 433 UNP A0A024E1G 433 LINKER SEQADV 4XHP GLY A 434 UNP A0A024E1G 434 LINKER SEQADV 4XHP SER A 435 UNP A0A024E1G 435 LINKER SEQADV 4XHP GLY A 436 UNP A0A024E1G 436 LINKER SEQADV 4XHP SER A 437 UNP A0A024E1G 437 LINKER SEQADV 4XHP GLY A 438 UNP A0A024E1G 438 LINKER SEQADV 4XHP SER A 439 UNP A0A024E1G 439 LINKER SEQADV 4XHP GLY A 440 UNP A0A024E1G 440 LINKER SEQADV 4XHP SER A 441 UNP A0A024E1G 441 LINKER SEQADV 4XHP GLY A 442 UNP A0A024E1G 442 LINKER SEQADV 4XHP SER A 443 UNP A0A024E1G 443 LINKER SEQADV 4XHP ASP A 799 UNP A0A024E1G MET 356 ENGINEERED MUTATION SEQADV 4XHP ASP A 803 UNP A0A024E1G PHE 360 ENGINEERED MUTATION SEQRES 1 A 866 MET VAL GLU GLN MET LEU SER LYS ASN MET LEU LEU GLY SEQRES 2 A 866 GLY PHE ASP THR GLY ASN ILE LYS ALA LYS ILE SER PHE SEQRES 3 A 866 LEU ASN GLU LYS GLY ASN ILE GLU SER PHE ALA ILE PRO SEQRES 4 A 866 THR VAL ILE ALA GLU ALA PRO PRO ALA LYS ILE ASP LEU SEQRES 5 A 866 LYS SER ALA PRO SER LYS LYS ASN ASP TYR VAL ASN GLU SEQRES 6 A 866 LYS ASP GLU ASP ILE GLU LEU LEU HIS VAL ARG ILE ILE SEQRES 7 A 866 SER ASN SER LEU ASP GLY ASP ALA ARG SER ARG ALA TRP SEQRES 8 A 866 TYR VAL GLY ALA TYR ALA LYS ASP GLN GLU ASP ARG GLN SEQRES 9 A 866 GLU PRO THR VAL ASP GLU MET GLY LYS THR GLU ASP LYS SEQRES 10 A 866 PHE SER GLN LYS ASN LYS LYS LEU HIS LEU ILE PRO LEU SEQRES 11 A 866 PHE THR SER MET ALA VAL ALA ALA ALA ARG ILE GLY LYS SEQRES 12 A 866 GLU GLU VAL SER VAL PRO PHE SER GLY GLY MET PRO ILE SEQRES 13 A 866 GLU ASP TYR LYS LEU ARG GLY GLU GLU GLN ILE LEU GLU SEQRES 14 A 866 MET LEU TYR GLY GLU HIS THR VAL GLU PHE LEU ASP GLY SEQRES 15 A 866 THR TYR GLU GLY LYS LYS ILE LYS ILE THR ILE ASN ASP SEQRES 16 A 866 GLY THR MET ASN VAL GLU GLY VAL SER SER VAL LEU ALA SEQRES 17 A 866 ILE LEU PHE ASP ILE VAL ASN GLY GLU ILE VAL GLU VAL SEQRES 18 A 866 GLU GLY MET ASP ALA GLU ILE GLY GLU SER TYR ALA ILE SEQRES 19 A 866 ASN ASP LEU GLY ALA GLY THR SER ASP ASN ALA PHE PHE SEQRES 20 A 866 GLU ASP GLY GLU LEU ASN LYS LYS LEU SER THR ASN THR SEQRES 21 A 866 ASP LEU GLY THR ASN LYS TYR ILE ASP GLU ILE LEU LYS SEQRES 22 A 866 ASN ILE LYS GLU ARG PHE MET GLU ASN GLU ILE LEU LYS SEQRES 23 A 866 SER ASP ASP THR ASP GLU ILE GLU SER PRO PHE LYS THR SEQRES 24 A 866 ARG GLU ASP PHE ILE GLN ARG LEU VAL MET PRO GLU VAL SEQRES 25 A 866 GLU LYS MET ILE GLU ASP ASP THR TYR LYS PRO THR PHE SEQRES 26 A 866 SER VAL LYS TRP GLY ASP VAL LYS GLU ASN VAL THR ASP SEQRES 27 A 866 ILE VAL MET ASP GLY MET LEU LYS TYR ALA GLU ASP GLN SEQRES 28 A 866 LYS ALA SER LEU MET LYS PHE TRP PHE LYS THR ASN ALA SEQRES 29 A 866 ASP LYS ASN ILE VAL VAL GLY GLY GLY VAL LEU PHE GLY SEQRES 30 A 866 TYR ALA GLY LEU ARG ASP LEU LYS GLU GLN ASP GLY PHE SEQRES 31 A 866 ILE LEU PRO LYS ASN ILE GLN GLU SER ALA TYR PHE THR SEQRES 32 A 866 SER ARG SER TYR LEU ILE ALA ASN LEU LEU GLU GLN LEU SEQRES 33 A 866 ASN LYS GLU GLY VAL GLU ALA GLY SER GLY SER GLY SER SEQRES 34 A 866 GLY SER GLY SER GLY SER GLY SER GLY SER GLY SER GLY SEQRES 35 A 866 SER MET VAL GLU GLN MET LEU SER LYS ASN MET LEU LEU SEQRES 36 A 866 GLY GLY PHE ASP THR GLY ASN ILE LYS ALA LYS ILE SER SEQRES 37 A 866 PHE LEU ASN GLU LYS GLY ASN ILE GLU SER PHE ALA ILE SEQRES 38 A 866 PRO THR VAL ILE ALA GLU ALA PRO PRO ALA LYS ILE ASP SEQRES 39 A 866 LEU LYS SER ALA PRO SER LYS LYS ASN ASP TYR VAL ASN SEQRES 40 A 866 GLU LYS ASP GLU ASP ILE GLU LEU LEU HIS VAL ARG ILE SEQRES 41 A 866 ILE SER ASN SER LEU ASP GLY ASP ALA ARG SER ARG ALA SEQRES 42 A 866 TRP TYR VAL GLY ALA TYR ALA LYS ASP GLN GLU ASP ARG SEQRES 43 A 866 GLN GLU PRO THR VAL ASP GLU MET GLY LYS THR GLU ASP SEQRES 44 A 866 LYS PHE SER GLN LYS ASN LYS LYS LEU HIS LEU ILE PRO SEQRES 45 A 866 LEU PHE THR SER MET ALA VAL ALA ALA ALA ARG ILE GLY SEQRES 46 A 866 LYS GLU GLU VAL SER VAL PRO PHE SER GLY GLY MET PRO SEQRES 47 A 866 ILE GLU ASP TYR LYS LEU ARG GLY GLU GLU GLN ILE LEU SEQRES 48 A 866 GLU MET LEU TYR GLY GLU HIS THR VAL GLU PHE LEU ASP SEQRES 49 A 866 GLY THR TYR GLU GLY LYS LYS ILE LYS ILE THR ILE ASN SEQRES 50 A 866 ASP GLY THR MET ASN VAL GLU GLY VAL SER SER VAL LEU SEQRES 51 A 866 ALA ILE LEU PHE ASP ILE VAL ASN GLY GLU ILE VAL GLU SEQRES 52 A 866 VAL GLU GLY MET ASP ALA GLU ILE GLY GLU SER TYR ALA SEQRES 53 A 866 ILE ASN ASP LEU GLY ALA GLY THR SER ASP ASN ALA PHE SEQRES 54 A 866 PHE GLU ASP GLY GLU LEU ASN LYS LYS LEU SER THR ASN SEQRES 55 A 866 THR ASP LEU GLY THR ASN LYS TYR ILE ASP GLU ILE LEU SEQRES 56 A 866 LYS ASN ILE LYS GLU ARG PHE MET GLU ASN GLU ILE LEU SEQRES 57 A 866 LYS SER PHE MET THR ASP GLU ILE GLU SER PRO PHE LYS SEQRES 58 A 866 THR ARG GLU ASP PHE ILE GLN ARG LEU VAL MET PRO GLU SEQRES 59 A 866 VAL GLU LYS MET ILE GLU ASP ASP THR TYR LYS PRO THR SEQRES 60 A 866 PHE SER VAL LYS TRP GLY PRO VAL LYS GLU ASN VAL THR SEQRES 61 A 866 ASP ILE VAL MET ASP GLY MET LEU LYS TYR ALA GLU ASP SEQRES 62 A 866 GLN LYS ALA SER LEU ASP LYS PHE TRP ASP LYS THR ASN SEQRES 63 A 866 ALA ASP LYS ASN ILE VAL VAL GLY GLY GLY VAL LEU PHE SEQRES 64 A 866 GLY TYR ALA GLY LEU ARG ASP LEU LYS GLU GLN ASP GLY SEQRES 65 A 866 PHE ILE LEU PRO LYS ASN ILE GLN GLU SER ALA TYR PHE SEQRES 66 A 866 THR SER ARG SER TYR LEU ILE ALA ASN LEU LEU GLU GLN SEQRES 67 A 866 LEU ASN LYS GLU GLY VAL GLU ALA HET MG A 900 1 HET ADP A 901 27 HET MG A 902 1 HET ADP A 903 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 3 ADP 2(C10 H15 N5 O10 P2) HELIX 1 AA1 GLU A 68 LEU A 72 5 5 HELIX 2 AA2 ASP A 85 SER A 88 5 4 HELIX 3 AA3 ALA A 95 GLN A 100 5 6 HELIX 4 AA4 LYS A 123 ILE A 141 1 19 HELIX 5 AA5 GLU A 164 GLU A 169 1 6 HELIX 6 AA6 GLY A 202 ILE A 209 5 8 HELIX 7 AA7 THR A 264 PHE A 279 1 16 HELIX 8 AA8 THR A 299 LEU A 307 1 9 HELIX 9 AA9 LEU A 307 ASP A 318 1 12 HELIX 10 AB1 VAL A 336 ASN A 363 1 28 HELIX 11 AB2 GLY A 372 GLY A 377 1 6 HELIX 12 AB3 GLY A 377 ARG A 382 1 6 HELIX 13 AB4 ASP A 383 GLU A 386 5 4 HELIX 14 AB5 ASN A 395 ALA A 400 5 6 HELIX 15 AB6 TYR A 401 LEU A 416 1 16 HELIX 16 AB7 ASP A 528 SER A 531 5 4 HELIX 17 AB8 LYS A 566 ILE A 584 1 19 HELIX 18 AB9 VAL A 649 ILE A 652 5 4 HELIX 19 AC1 GLY A 706 PHE A 722 1 17 HELIX 20 AC2 THR A 742 LEU A 750 1 9 HELIX 21 AC3 LEU A 750 ASP A 761 1 12 HELIX 22 AC4 VAL A 779 ASN A 806 1 28 HELIX 23 AC5 GLY A 815 GLY A 820 1 6 HELIX 24 AC6 GLY A 820 ARG A 825 1 6 HELIX 25 AC7 LEU A 827 GLY A 832 1 6 HELIX 26 AC8 TYR A 844 LEU A 859 1 16 SHEET 1 AA1 3 GLY A 13 THR A 17 0 SHEET 2 AA1 3 LYS A 21 LEU A 27 -1 O SER A 25 N GLY A 14 SHEET 3 AA1 3 ILE A 33 PRO A 39 -1 O GLU A 34 N PHE A 26 SHEET 1 AA2 6 ILE A 42 GLU A 44 0 SHEET 2 AA2 6 ALA A 90 VAL A 93 -1 O TYR A 92 N ALA A 43 SHEET 3 AA2 6 LEU A 73 SER A 79 -1 N LEU A 73 O VAL A 93 SHEET 4 AA2 6 GLY A 173 PHE A 179 -1 O GLU A 178 N ARG A 76 SHEET 5 AA2 6 LYS A 188 ILE A 193 -1 O ILE A 191 N HIS A 175 SHEET 6 AA2 6 GLU A 145 SER A 147 1 N VAL A 146 O THR A 192 SHEET 1 AA3 2 PHE A 150 SER A 151 0 SHEET 2 AA3 2 GLY A 196 THR A 197 1 O THR A 197 N PHE A 150 SHEET 1 AA4 2 PHE A 211 ILE A 213 0 SHEET 2 AA4 2 GLU A 217 VAL A 219 -1 O ILE A 218 N ASP A 212 SHEET 1 AA5 3 GLU A 251 LEU A 252 0 SHEET 2 AA5 3 SER A 242 GLU A 248 -1 N GLU A 248 O GLU A 251 SHEET 3 AA5 3 THR A 258 THR A 260 -1 O THR A 260 N SER A 242 SHEET 1 AA6 5 GLU A 251 LEU A 252 0 SHEET 2 AA6 5 SER A 242 GLU A 248 -1 N GLU A 248 O GLU A 251 SHEET 3 AA6 5 TYR A 232 LEU A 237 -1 N TYR A 232 O PHE A 247 SHEET 4 AA6 5 LYS A 366 GLY A 371 1 O ILE A 368 N ALA A 233 SHEET 5 AA6 5 PHE A 390 ILE A 391 1 O ILE A 391 N ASN A 367 SHEET 1 AA7 2 SER A 326 TRP A 329 0 SHEET 2 AA7 2 VAL A 332 ASN A 335 -1 O VAL A 332 N TRP A 329 SHEET 1 AA8 3 GLY A 456 THR A 460 0 SHEET 2 AA8 3 LYS A 464 LEU A 470 -1 O SER A 468 N GLY A 457 SHEET 3 AA8 3 ILE A 476 PRO A 482 -1 O ILE A 481 N ALA A 465 SHEET 1 AA9 6 ARG A 546 GLN A 547 0 SHEET 2 AA9 6 ILE A 485 GLU A 487 -1 N ILE A 485 O GLN A 547 SHEET 3 AA9 6 ARG A 532 VAL A 536 -1 O TYR A 535 N ALA A 486 SHEET 4 AA9 6 HIS A 517 ILE A 521 -1 N VAL A 518 O TRP A 534 SHEET 5 AA9 6 GLY A 616 PHE A 622 -1 O THR A 619 N ILE A 521 SHEET 6 AA9 6 LYS A 631 ILE A 636 -1 O ILE A 634 N HIS A 618 SHEET 1 AB1 2 PHE A 593 SER A 594 0 SHEET 2 AB1 2 GLY A 639 THR A 640 1 O THR A 640 N PHE A 593 SHEET 1 AB2 2 PHE A 654 ILE A 656 0 SHEET 2 AB2 2 GLU A 660 VAL A 662 -1 O ILE A 661 N ASP A 655 SHEET 1 AB3 3 GLU A 694 ASN A 696 0 SHEET 2 AB3 3 SER A 685 GLU A 691 -1 N PHE A 689 O ASN A 696 SHEET 3 AB3 3 SER A 700 THR A 703 -1 O THR A 701 N ASN A 687 SHEET 1 AB4 4 GLU A 694 ASN A 696 0 SHEET 2 AB4 4 SER A 685 GLU A 691 -1 N PHE A 689 O ASN A 696 SHEET 3 AB4 4 SER A 674 LEU A 680 -1 N TYR A 675 O PHE A 690 SHEET 4 AB4 4 LYS A 809 VAL A 813 1 O VAL A 813 N LEU A 680 SHEET 1 AB5 2 SER A 769 TRP A 772 0 SHEET 2 AB5 2 VAL A 775 ASN A 778 -1 O VAL A 775 N TRP A 772 LINK O GLY A 84 CB ARG A 87 1555 1555 1.35 LINK OD1 ASP A 236 MG MG A 900 1555 1555 2.82 LINK OD2 ASP A 679 MG MG A 902 1555 1555 2.93 LINK MG MG A 900 O2B ADP A 901 1555 1555 2.59 LINK MG MG A 902 O1B ADP A 903 1555 1555 2.07 LINK MG MG A 902 O2A ADP A 903 1555 1555 2.56 CISPEP 1 SER A 7 LYS A 8 0 -4.46 CISPEP 2 LYS A 121 ASN A 122 0 -2.77 CISPEP 3 LYS A 564 ASN A 565 0 -4.73 CISPEP 4 LYS A 837 ASN A 838 0 8.67 SITE 1 AC1 4 ASP A 16 LYS A 23 ASP A 236 ADP A 901 SITE 1 AC2 14 ILE A 20 LYS A 23 LEU A 237 GLY A 238 SITE 2 AC2 14 ALA A 239 THR A 264 ILE A 304 VAL A 308 SITE 3 AC2 14 MET A 309 VAL A 312 GLY A 372 GLY A 373 SITE 4 AC2 14 LEU A 375 MG A 900 SITE 1 AC3 3 LYS A 466 ASP A 679 ADP A 903 SITE 1 AC4 10 LYS A 464 LYS A 466 ALA A 682 THR A 707 SITE 2 AC4 10 ILE A 747 MET A 752 GLY A 815 GLY A 816 SITE 3 AC4 10 LEU A 818 MG A 902 CRYST1 55.306 97.275 87.898 90.00 98.82 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018081 0.000000 0.002805 0.00000 SCALE2 0.000000 0.010280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011513 0.00000