HEADER LIGASE 06-JAN-15 4XI6 TITLE CRYSTAL STRUCTURE OF THE MZM-REP DOMAINS OF MIND BOMB 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MIB1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DAPK-INTERACTING PROTEIN 1,DIP-1,MIND BOMB HOMOLOG 1,ZINC COMPND 5 FINGER ZZ TYPE WITH ANKYRIN REPEAT DOMAIN PROTEIN 2; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MIB1, DIP1, KIAA1323, ZZANK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E3 LIGASE, NOTCH SIGNALING, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.J.MCMILLAN,S.C.BLACKLOW REVDAT 6 27-DEC-23 4XI6 1 REMARK REVDAT 5 04-DEC-19 4XI6 1 REMARK REVDAT 4 27-SEP-17 4XI6 1 REMARK REVDAT 3 20-SEP-17 4XI6 1 SOURCE JRNL REMARK REVDAT 2 25-MAR-15 4XI6 1 JRNL REVDAT 1 18-MAR-15 4XI6 0 JRNL AUTH B.J.MCMILLAN,B.SCHNUTE,N.OHLENHARD,B.ZIMMERMAN,L.MILES, JRNL AUTH 2 N.BEGLOVA,T.KLEIN,S.C.BLACKLOW JRNL TITL A TAIL OF TWO SITES: A BIPARTITE MECHANISM FOR RECOGNITION JRNL TITL 2 OF NOTCH LIGANDS BY MIND BOMB E3 LIGASES. JRNL REF MOL.CELL V. 57 912 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 25747658 JRNL DOI 10.1016/J.MOLCEL.2015.01.019 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 30375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.580 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9507 - 4.8058 0.97 2297 162 0.2339 0.3023 REMARK 3 2 4.8058 - 3.8151 0.99 2200 155 0.1619 0.1895 REMARK 3 3 3.8151 - 3.3331 0.99 2156 152 0.1810 0.2013 REMARK 3 4 3.3331 - 3.0284 1.00 2181 153 0.1862 0.2545 REMARK 3 5 3.0284 - 2.8114 1.00 2151 152 0.2006 0.2548 REMARK 3 6 2.8114 - 2.6456 1.00 2160 152 0.2027 0.2370 REMARK 3 7 2.6456 - 2.5132 1.00 2123 150 0.2060 0.2462 REMARK 3 8 2.5132 - 2.4038 1.00 2145 152 0.1996 0.2218 REMARK 3 9 2.4038 - 2.3112 0.99 2132 149 0.2157 0.2310 REMARK 3 10 2.3112 - 2.2315 0.99 2093 148 0.2229 0.2431 REMARK 3 11 2.2315 - 2.1617 0.98 2076 146 0.2531 0.2735 REMARK 3 12 2.1617 - 2.0999 0.90 1910 134 0.2815 0.3160 REMARK 3 13 2.0999 - 2.0446 0.74 1554 110 0.3033 0.3672 REMARK 3 14 2.0446 - 1.9947 0.57 1197 85 0.3114 0.3725 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2918 REMARK 3 ANGLE : 0.967 3941 REMARK 3 CHIRALITY : 0.036 416 REMARK 3 PLANARITY : 0.004 512 REMARK 3 DIHEDRAL : 14.284 1043 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 6.9300 -37.7679 -19.8573 REMARK 3 T TENSOR REMARK 3 T11: 0.0242 T22: 0.2741 REMARK 3 T33: 0.1420 T12: 0.0596 REMARK 3 T13: 0.0597 T23: 0.0810 REMARK 3 L TENSOR REMARK 3 L11: 0.1480 L22: 0.1146 REMARK 3 L33: 0.2114 L12: 0.0335 REMARK 3 L13: -0.0894 L23: 0.0007 REMARK 3 S TENSOR REMARK 3 S11: 0.1204 S12: -0.0669 S13: 0.0848 REMARK 3 S21: 0.1142 S22: 0.1133 S23: 0.0420 REMARK 3 S31: -0.0361 S32: -0.2672 S33: 0.3042 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XI6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000202417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2562, 1.2822, 1.283 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29269 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M (NH4)2SO4, 20% V/V GLYCEROL, REMARK 280 HEPES PH 7.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.47950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.73975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 128.21925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.47950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 128.21925 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.73975 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -73.08300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -85.47950 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 73.08300 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -73.08300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -42.73975 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CD2 LEU A 264 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 663 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 236 REMARK 465 GLN A 237 REMARK 465 ASN A 238 REMARK 465 GLY A 239 REMARK 465 ASN A 240 REMARK 465 ARG A 241 REMARK 465 ASN A 242 REMARK 465 PRO A 243 REMARK 465 GLY A 244 REMARK 465 GLY A 245 REMARK 465 LEU A 246 REMARK 465 GLN A 247 REMARK 465 ILE A 248 REMARK 465 GLY A 249 REMARK 465 ASP A 250 REMARK 465 ALA A 401 REMARK 465 SER A 402 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 251 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 63 H ALA A 65 1.46 REMARK 500 O HOH A 782 O HOH A 784 1.98 REMARK 500 O SER A 63 N ALA A 65 2.03 REMARK 500 O HOH A 655 O HOH A 762 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD21 LEU A 264 HD22 LEU A 264 7644 0.00 REMARK 500 HD22 LEU A 264 HD23 LEU A 264 7644 0.72 REMARK 500 HD23 LEU A 264 HD23 LEU A 264 7644 0.81 REMARK 500 CD2 LEU A 264 HD22 LEU A 264 7644 0.97 REMARK 500 CD2 LEU A 264 HD23 LEU A 264 7644 0.97 REMARK 500 CD2 LEU A 264 HD21 LEU A 264 7644 0.97 REMARK 500 HD21 LEU A 264 HD23 LEU A 264 7644 1.33 REMARK 500 CG LEU A 264 CD2 LEU A 264 7644 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 25 32.17 -145.26 REMARK 500 HIS A 118 -162.55 63.31 REMARK 500 GLN A 164 40.03 -148.15 REMARK 500 GLU A 166 -128.52 62.16 REMARK 500 ASN A 203 -179.89 179.39 REMARK 500 HIS A 268 17.87 -143.73 REMARK 500 VAL A 285 96.75 -69.11 REMARK 500 ALA A 314 -91.75 -164.33 REMARK 500 SER A 331 104.12 -8.50 REMARK 500 SER A 379 -10.42 80.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 85 SG REMARK 620 2 CYS A 88 SG 107.4 REMARK 620 3 CYS A 109 SG 117.0 108.8 REMARK 620 4 CYS A 112 SG 102.9 113.9 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 100 SG REMARK 620 2 CYS A 103 SG 123.0 REMARK 620 3 HIS A 118 NE2 112.1 106.3 REMARK 620 4 HIS A 122 ND1 110.3 103.0 99.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XI7 RELATED DB: PDB REMARK 900 RELATED ID: 4XIB RELATED DB: PDB DBREF 4XI6 A 8 314 UNP Q86YT6 MIB1_HUMAN 8 314 DBREF 4XI6 A 331 402 UNP Q86YT6 MIB1_HUMAN 331 402 SEQADV 4XI6 SER A 7 UNP Q86YT6 EXPRESSION TAG SEQRES 1 A 380 SER ARG VAL MET VAL GLU GLY VAL GLY ALA ARG VAL VAL SEQRES 2 A 380 ARG GLY PRO ASP TRP LYS TRP GLY LYS GLN ASP GLY GLY SEQRES 3 A 380 GLU GLY HIS VAL GLY THR VAL ARG SER PHE GLU SER PRO SEQRES 4 A 380 GLU GLU VAL VAL VAL VAL TRP ASP ASN GLY THR ALA ALA SEQRES 5 A 380 ASN TYR ARG CYS SER GLY ALA TYR ASP LEU ARG ILE LEU SEQRES 6 A 380 ASP SER ALA PRO THR GLY ILE LYS HIS ASP GLY THR MET SEQRES 7 A 380 CYS ASP THR CYS ARG GLN GLN PRO ILE ILE GLY ILE ARG SEQRES 8 A 380 TRP LYS CYS ALA GLU CYS THR ASN TYR ASP LEU CYS THR SEQRES 9 A 380 VAL CYS TYR HIS GLY ASP LYS HIS HIS LEU ARG HIS ARG SEQRES 10 A 380 PHE TYR ARG ILE THR THR PRO GLY SER GLU ARG VAL LEU SEQRES 11 A 380 LEU GLU SER ARG ARG LYS SER LYS LYS ILE THR ALA ARG SEQRES 12 A 380 GLY ILE PHE ALA GLY ALA ARG VAL VAL ARG GLY VAL ASP SEQRES 13 A 380 TRP GLN TRP GLU ASP GLN ASP GLY GLY ASN GLY ARG ARG SEQRES 14 A 380 GLY LYS VAL THR GLU ILE GLN ASP TRP SER ALA SER SER SEQRES 15 A 380 PRO HIS SER ALA ALA TYR VAL LEU TRP ASP ASN GLY ALA SEQRES 16 A 380 LYS ASN LEU TYR ARG VAL GLY PHE GLU GLY MET SER ASP SEQRES 17 A 380 LEU LYS CYS VAL GLN ASP ALA LYS GLY GLY SER PHE TYR SEQRES 18 A 380 ARG ASP HIS CYS PRO VAL LEU GLY GLU GLN ASN GLY ASN SEQRES 19 A 380 ARG ASN PRO GLY GLY LEU GLN ILE GLY ASP LEU VAL ASN SEQRES 20 A 380 ILE ASP LEU ASP LEU GLU ILE VAL GLN SER LEU GLN HIS SEQRES 21 A 380 GLY HIS GLY GLY TRP THR ASP GLY MET PHE GLU THR LEU SEQRES 22 A 380 THR THR THR GLY THR VAL CYS GLY ILE ASP GLU ASP HIS SEQRES 23 A 380 ASP ILE VAL VAL GLN TYR PRO SER GLY ASN ARG TRP THR SEQRES 24 A 380 PHE ASN PRO ALA VAL LEU THR LYS ALA SER GLN PHE GLN SEQRES 25 A 380 VAL GLY ASP LEU VAL GLN VAL CYS TYR ASP LEU GLU ARG SEQRES 26 A 380 ILE LYS LEU LEU GLN ARG GLY HIS GLY GLU TRP ALA GLU SEQRES 27 A 380 ALA MET LEU PRO THR LEU GLY LYS VAL GLY ARG VAL GLN SEQRES 28 A 380 GLN ILE TYR SER ASP SER ASP LEU LYS VAL GLU VAL CYS SEQRES 29 A 380 GLY THR SER TRP THR TYR ASN PRO ALA ALA VAL SER LYS SEQRES 30 A 380 VAL ALA SER HET ZN A 501 1 HET ZN A 502 1 HET SO4 A 503 5 HET SO4 A 504 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *186(H2 O) HELIX 1 AA1 SER A 73 GLY A 77 5 5 HELIX 2 AA2 CYS A 109 GLY A 115 1 7 HELIX 3 AA3 SER A 139 SER A 143 5 5 HELIX 4 AA4 GLY A 208 MET A 212 5 5 HELIX 5 AA5 ASP A 229 CYS A 231 5 3 HELIX 6 AA6 ASP A 257 GLN A 265 1 9 HELIX 7 AA7 THR A 272 MET A 275 5 4 HELIX 8 AA8 PHE A 276 THR A 281 1 6 HELIX 9 AA9 ASN A 307 LEU A 311 5 5 HELIX 10 AB1 ASP A 344 HIS A 355 1 12 HELIX 11 AB2 ALA A 359 LEU A 366 5 8 HELIX 12 AB3 ASN A 393 ALA A 395 5 3 SHEET 1 AA1 5 ALA A 57 ARG A 61 0 SHEET 2 AA1 5 GLU A 47 TRP A 52 -1 N VAL A 50 O ALA A 58 SHEET 3 AA1 5 GLY A 37 PHE A 42 -1 N SER A 41 O VAL A 49 SHEET 4 AA1 5 ARG A 17 ARG A 20 -1 N VAL A 18 O GLY A 37 SHEET 5 AA1 5 LEU A 68 ASP A 72 -1 O ASP A 72 N ARG A 17 SHEET 1 AA2 2 LYS A 79 HIS A 80 0 SHEET 2 AA2 2 ILE A 93 ILE A 94 -1 O ILE A 93 N HIS A 80 SHEET 1 AA3 4 ASP A 107 LEU A 108 0 SHEET 2 AA3 4 ARG A 97 CYS A 100 -1 N TRP A 98 O LEU A 108 SHEET 3 AA3 4 PHE A 124 ILE A 127 -1 O TYR A 125 N LYS A 99 SHEET 4 AA3 4 VAL A 135 LEU A 136 -1 O VAL A 135 N ARG A 126 SHEET 1 AA4 2 LYS A 145 GLY A 150 0 SHEET 2 AA4 2 ALA A 221 TYR A 227 -1 O PHE A 226 N ILE A 146 SHEET 1 AA5 5 LYS A 202 ARG A 206 0 SHEET 2 AA5 5 ALA A 192 TRP A 197 -1 N VAL A 195 O ASN A 203 SHEET 3 AA5 5 GLY A 176 GLN A 182 -1 N GLU A 180 O TYR A 194 SHEET 4 AA5 5 ARG A 156 ARG A 159 -1 N VAL A 157 O GLY A 176 SHEET 5 AA5 5 LEU A 215 GLN A 219 -1 O LYS A 216 N VAL A 158 SHEET 1 AA6 3 THR A 284 ILE A 288 0 SHEET 2 AA6 3 ILE A 294 GLN A 297 -1 O GLN A 297 N THR A 284 SHEET 3 AA6 3 ARG A 303 PHE A 306 -1 O TRP A 304 N VAL A 296 SHEET 1 AA7 5 THR A 388 TYR A 392 0 SHEET 2 AA7 5 LEU A 381 VAL A 385 -1 N VAL A 383 O TRP A 390 SHEET 3 AA7 5 VAL A 369 ILE A 375 -1 N ARG A 371 O GLU A 384 SHEET 4 AA7 5 LEU A 338 VAL A 341 -1 N VAL A 339 O GLY A 370 SHEET 5 AA7 5 VAL A 397 LYS A 399 -1 O SER A 398 N GLN A 340 LINK SG CYS A 85 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 88 ZN ZN A 501 1555 1555 2.34 LINK SG CYS A 100 ZN ZN A 502 1555 1555 2.31 LINK SG CYS A 103 ZN ZN A 502 1555 1555 2.30 LINK SG CYS A 109 ZN ZN A 501 1555 1555 2.27 LINK SG CYS A 112 ZN ZN A 501 1555 1555 2.35 LINK NE2 HIS A 118 ZN ZN A 502 1555 1555 2.04 LINK ND1 HIS A 122 ZN ZN A 502 1555 1555 2.10 CISPEP 1 GLN A 91 PRO A 92 0 -0.97 SITE 1 AC1 4 CYS A 85 CYS A 88 CYS A 109 CYS A 112 SITE 1 AC2 4 CYS A 100 CYS A 103 HIS A 118 HIS A 122 SITE 1 AC3 9 ARG A 8 LYS A 99 CYS A 103 THR A 104 SITE 2 AC3 9 ASN A 105 ARG A 347 HOH A 602 HOH A 603 SITE 3 AC3 9 HOH A 616 SITE 1 AC4 8 ARG A 126 THR A 128 VAL A 135 PRO A 232 SITE 2 AC4 8 HOH A 675 HOH A 676 HOH A 696 HOH A 723 CRYST1 73.083 73.083 170.959 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013683 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005849 0.00000