HEADER TRANSFERASE/DNA 07-JAN-15 4XIU TITLE BINARY COMPLEX STRUCTURE OF KLENOW FRAGMENT OF TAQ DNA POLYMERASE TITLE 2 I707L MUTANT WITH DNA CONTAINING TTT OVERHANG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTHETIC OLIGONUCLEOTIDE PRIMER STRAND; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SYNTHETIC OLIGONUCLEOTIDE TEMPLATE STRAND; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE I, THERMOSTABLE; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: KLENOW FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICS; COMPND 13 SYNONYM: TAQ POLYMERASE 1; COMPND 14 EC: 2.7.7.7; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: SYNTHETIC OLIGONUCLEOTIDE; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 OTHER_DETAILS: SYNTHETIC OLIGONUCLEOTIDE; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 13 ORGANISM_TAXID: 271; SOURCE 14 GENE: POLA, POL1; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.Y.WU REVDAT 3 27-SEP-23 4XIU 1 SOURCE KEYWDS JRNL REMARK REVDAT 2 11-FEB-15 4XIU 1 JRNL REVDAT 1 21-JAN-15 4XIU 0 JRNL AUTH E.Y.WU,A.R.WALSH,E.C.MATERNE,E.P.HILTNER,B.ZIELINSKI, JRNL AUTH 2 B.R.MILLER,L.MAWBY,E.MODESTE,C.A.PARISH,W.M.BARNES, JRNL AUTH 3 M.B.KERMEKCHIEV JRNL TITL A CONSERVATIVE ISOLEUCINE TO LEUCINE MUTATION CAUSES MAJOR JRNL TITL 2 REARRANGEMENTS AND COLD SENSITIVITY IN KLENTAQ1 DNA JRNL TITL 3 POLYMERASE. JRNL REF BIOCHEMISTRY V. 54 881 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25537790 JRNL DOI 10.1021/BI501198F REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 20422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1075 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4191 REMARK 3 NUCLEIC ACID ATOMS : 530 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.009 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.354 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.317 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4XIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.96 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: PDB ENTRY 4KTQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.22333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.44667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.44667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.22333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 294 CG CD1 CD2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 ARG A 392 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 ARG A 469 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 530 CG CD OE1 OE2 REMARK 470 ARG A 556 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 630 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 634 CG CD OE1 OE2 REMARK 470 ILE A 638 CG1 CG2 CD1 REMARK 470 SER A 644 OG REMARK 470 ARG A 651 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 654 CG1 CG2 REMARK 470 GLU A 687 CG CD OE1 OE2 REMARK 470 GLU A 688 CG CD OE1 OE2 REMARK 470 ARG A 695 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 709 CG CD CE NZ REMARK 470 GLU A 713 CG CD OE1 OE2 REMARK 470 ARG A 716 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 774 CG CD OE1 OE2 REMARK 470 GLU A 794 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 320 OH TYR A 339 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 432 OE2 GLU A 432 6555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 111 O3' DOC B 112 P 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DOC B 112 O3' - P - OP2 ANGL. DEV. = 9.9 DEGREES REMARK 500 DG C 204 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DG C 214 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 300 105.55 -43.62 REMARK 500 LEU A 367 93.00 52.78 REMARK 500 GLU A 400 40.06 -95.72 REMARK 500 GLU A 423 56.98 -105.68 REMARK 500 VAL A 433 -69.18 -142.37 REMARK 500 ASP A 496 -71.77 -84.45 REMARK 500 GLU A 497 -70.51 -51.46 REMARK 500 VAL A 586 -15.49 -160.28 REMARK 500 GLU A 601 153.19 -41.04 REMARK 500 ASP A 625 96.34 -64.52 REMARK 500 ILE A 638 -55.06 -14.76 REMARK 500 SER A 644 6.49 -66.47 REMARK 500 ARG A 651 -134.10 58.02 REMARK 500 TYR A 686 86.33 -66.77 REMARK 500 GLU A 687 -61.94 170.01 REMARK 500 GLU A 774 1.14 -59.06 REMARK 500 HIS A 784 -68.04 66.61 REMARK 500 TYR A 811 83.39 -168.84 REMARK 500 ALA A 814 -15.48 -44.29 REMARK 500 LYS A 831 45.83 77.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 OD2 REMARK 620 2 GLU A 786 OE1 70.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 901 DBREF 4XIU B 101 112 PDB 4XIU 4XIU 101 112 DBREF 4XIU C 203 216 PDB 4XIU 4XIU 203 216 DBREF 4XIU A 294 832 UNP P19821 DPO1_THEAQ 294 832 SEQADV 4XIU LEU A 707 UNP P19821 ILE 707 ENGINEERED MUTATION SEQRES 1 B 12 DG DA DC DC DA DC DG DG DC DG DC DOC SEQRES 1 C 14 DT DG DG DG DC DG DC DC DG DT DG DG DT SEQRES 2 C 14 DC SEQRES 1 A 539 LEU GLU GLU ALA PRO TRP PRO PRO PRO GLU GLY ALA PHE SEQRES 2 A 539 VAL GLY PHE VAL LEU SER ARG LYS GLU PRO MET TRP ALA SEQRES 3 A 539 ASP LEU LEU ALA LEU ALA ALA ALA ARG GLY GLY ARG VAL SEQRES 4 A 539 HIS ARG ALA PRO GLU PRO TYR LYS ALA LEU ARG ASP LEU SEQRES 5 A 539 LYS GLU ALA ARG GLY LEU LEU ALA LYS ASP LEU SER VAL SEQRES 6 A 539 LEU ALA LEU ARG GLU GLY LEU GLY LEU PRO PRO GLY ASP SEQRES 7 A 539 ASP PRO MET LEU LEU ALA TYR LEU LEU ASP PRO SER ASN SEQRES 8 A 539 THR THR PRO GLU GLY VAL ALA ARG ARG TYR GLY GLY GLU SEQRES 9 A 539 TRP THR GLU GLU ALA GLY GLU ARG ALA ALA LEU SER GLU SEQRES 10 A 539 ARG LEU PHE ALA ASN LEU TRP GLY ARG LEU GLU GLY GLU SEQRES 11 A 539 GLU ARG LEU LEU TRP LEU TYR ARG GLU VAL GLU ARG PRO SEQRES 12 A 539 LEU SER ALA VAL LEU ALA HIS MET GLU ALA THR GLY VAL SEQRES 13 A 539 ARG LEU ASP VAL ALA TYR LEU ARG ALA LEU SER LEU GLU SEQRES 14 A 539 VAL ALA GLU GLU ILE ALA ARG LEU GLU ALA GLU VAL PHE SEQRES 15 A 539 ARG LEU ALA GLY HIS PRO PHE ASN LEU ASN SER ARG ASP SEQRES 16 A 539 GLN LEU GLU ARG VAL LEU PHE ASP GLU LEU GLY LEU PRO SEQRES 17 A 539 ALA ILE GLY LYS THR GLU LYS THR GLY LYS ARG SER THR SEQRES 18 A 539 SER ALA ALA VAL LEU GLU ALA LEU ARG GLU ALA HIS PRO SEQRES 19 A 539 ILE VAL GLU LYS ILE LEU GLN TYR ARG GLU LEU THR LYS SEQRES 20 A 539 LEU LYS SER THR TYR ILE ASP PRO LEU PRO ASP LEU ILE SEQRES 21 A 539 HIS PRO ARG THR GLY ARG LEU HIS THR ARG PHE ASN GLN SEQRES 22 A 539 THR ALA THR ALA THR GLY ARG LEU SER SER SER ASP PRO SEQRES 23 A 539 ASN LEU GLN ASN ILE PRO VAL ARG THR PRO LEU GLY GLN SEQRES 24 A 539 ARG ILE ARG ARG ALA PHE ILE ALA GLU GLU GLY TRP LEU SEQRES 25 A 539 LEU VAL ALA LEU ASP TYR SER GLN ILE GLU LEU ARG VAL SEQRES 26 A 539 LEU ALA HIS LEU SER GLY ASP GLU ASN LEU ILE ARG VAL SEQRES 27 A 539 PHE GLN GLU GLY ARG ASP ILE HIS THR GLU THR ALA SER SEQRES 28 A 539 TRP MET PHE GLY VAL PRO ARG GLU ALA VAL ASP PRO LEU SEQRES 29 A 539 MET ARG ARG ALA ALA LYS THR ILE ASN PHE GLY VAL LEU SEQRES 30 A 539 TYR GLY MET SER ALA HIS ARG LEU SER GLN GLU LEU ALA SEQRES 31 A 539 ILE PRO TYR GLU GLU ALA GLN ALA PHE ILE GLU ARG TYR SEQRES 32 A 539 PHE GLN SER PHE PRO LYS VAL ARG ALA TRP LEU GLU LYS SEQRES 33 A 539 THR LEU GLU GLU GLY ARG ARG ARG GLY TYR VAL GLU THR SEQRES 34 A 539 LEU PHE GLY ARG ARG ARG TYR VAL PRO ASP LEU GLU ALA SEQRES 35 A 539 ARG VAL LYS SER VAL ARG GLU ALA ALA GLU ARG MET ALA SEQRES 36 A 539 PHE ASN MET PRO VAL GLN GLY THR ALA ALA ASP LEU MET SEQRES 37 A 539 LYS LEU ALA MET VAL LYS LEU PHE PRO ARG LEU GLU GLU SEQRES 38 A 539 MET GLY ALA ARG MET LEU LEU GLN VAL HIS ASP GLU LEU SEQRES 39 A 539 VAL LEU GLU ALA PRO LYS GLU ARG ALA GLU ALA VAL ALA SEQRES 40 A 539 ARG LEU ALA LYS GLU VAL MET GLU GLY VAL TYR PRO LEU SEQRES 41 A 539 ALA VAL PRO LEU GLU VAL GLU VAL GLY ILE GLY GLU ASP SEQRES 42 A 539 TRP LEU SER ALA LYS GLU HET DOC B 112 18 HET MG A 901 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 DOC C9 H14 N3 O6 P FORMUL 4 MG MG 2+ FORMUL 5 HOH *(H2 O) HELIX 1 AA1 GLU A 337 LEU A 342 1 6 HELIX 2 AA2 ARG A 343 LEU A 345 5 3 HELIX 3 AA3 LEU A 352 GLU A 363 1 12 HELIX 4 AA4 ASP A 372 ASP A 381 1 10 HELIX 5 AA5 THR A 386 GLY A 395 1 10 HELIX 6 AA6 GLU A 401 GLY A 418 1 18 HELIX 7 AA7 GLU A 423 VAL A 433 1 11 HELIX 8 AA8 VAL A 433 GLY A 448 1 16 HELIX 9 AA9 ASP A 452 GLY A 479 1 28 HELIX 10 AB1 SER A 486 ASP A 496 1 11 HELIX 11 AB2 SER A 515 LEU A 522 1 8 HELIX 12 AB3 HIS A 526 TYR A 545 1 20 HELIX 13 AB4 PRO A 548 ILE A 553 5 6 HELIX 14 AB5 THR A 588 ALA A 597 1 10 HELIX 15 AB6 GLN A 613 GLY A 624 1 12 HELIX 16 AB7 ASP A 625 GLU A 634 1 10 HELIX 17 AB8 ASP A 637 PHE A 647 1 11 HELIX 18 AB9 ASP A 655 VAL A 669 1 15 HELIX 19 AC1 SER A 674 LEU A 682 1 9 HELIX 20 AC2 GLU A 687 PHE A 700 1 14 HELIX 21 AC3 PHE A 700 GLY A 718 1 19 HELIX 22 AC4 PRO A 731 ALA A 735 5 5 HELIX 23 AC5 VAL A 737 GLU A 774 1 38 HELIX 24 AC6 ARG A 795 GLY A 809 1 15 SHEET 1 AA1 4 GLU A 295 ALA A 297 0 SHEET 2 AA1 4 ARG A 331 ARG A 334 1 O VAL A 332 N GLU A 295 SHEET 3 AA1 4 ALA A 325 ALA A 327 -1 N ALA A 326 O HIS A 333 SHEET 4 AA1 4 PHE A 306 VAL A 307 -1 N PHE A 306 O ALA A 327 SHEET 1 AA2 2 VAL A 310 LEU A 311 0 SHEET 2 AA2 2 LEU A 321 ALA A 323 -1 O ALA A 323 N VAL A 310 SHEET 1 AA3 3 ARG A 559 LEU A 560 0 SHEET 2 AA3 3 VAL A 449 LEU A 451 -1 N VAL A 449 O LEU A 560 SHEET 3 AA3 3 PHE A 598 ILE A 599 -1 O ILE A 599 N ARG A 450 SHEET 1 AA4 2 ARG A 563 ASN A 565 0 SHEET 2 AA4 2 SER A 575 SER A 577 -1 O SER A 577 N ARG A 563 SHEET 1 AA5 4 ARG A 778 GLN A 782 0 SHEET 2 AA5 4 GLU A 786 PRO A 792 -1 O GLU A 790 N ARG A 778 SHEET 3 AA5 4 TRP A 604 TYR A 611 -1 N VAL A 607 O LEU A 789 SHEET 4 AA5 4 VAL A 819 GLY A 824 -1 O GLY A 824 N LEU A 606 SHEET 1 AA6 2 TYR A 719 GLU A 721 0 SHEET 2 AA6 2 ARG A 727 TYR A 729 -1 O ARG A 728 N VAL A 720 LINK O3' DC B 111 P DOC B 112 1555 1555 1.72 LINK OD2 ASP A 610 MG MG A 901 1555 1555 2.37 LINK OE1 GLU A 786 MG MG A 901 1555 1555 2.86 CISPEP 1 ASP A 578 PRO A 579 0 1.23 SITE 1 AC1 2 ASP A 610 GLU A 786 CRYST1 110.030 110.030 90.670 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009088 0.005247 0.000000 0.00000 SCALE2 0.000000 0.010494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011029 0.00000