HEADER HYDROLASE 09-JAN-15 4XJR TITLE THE CATALYTIC MECHANISM OF HUMAN PARAINFLUENZA VIRUS TYPE 3 TITLE 2 HAEMAGGLUTININ-NEURAMINIDASE REVEALED COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ-NEURAMINIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 125-572; COMPND 5 EC: 3.2.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PARAINFLUENZA VIRUS 3; SOURCE 3 ORGANISM_TAXID: 11216; SOURCE 4 ATCC: VR-93D; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBAC/CT-TOPO KEYWDS HYDROLASE, HUMAN PARAINFLUENZA VIRUS 3, HAEMAGGLUTININ-NEURAMINIDASE, KEYWDS 2 SIALIDASE MECHANISM EXPDTA X-RAY DIFFRACTION AUTHOR L.DIRR,I.EL-DEEB,P.GUILLON,C.CARROUX,L.CHAVAS,M.VON ITZSTEIN REVDAT 5 29-JUL-20 4XJR 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 01-JAN-20 4XJR 1 REMARK REVDAT 3 06-SEP-17 4XJR 1 COMPND SOURCE JRNL REMARK REVDAT 3 2 1 LINK ATOM REVDAT 2 04-MAR-15 4XJR 1 JRNL REVDAT 1 11-FEB-15 4XJR 0 JRNL AUTH L.DIRR,I.M.EL-DEEB,P.GUILLON,C.J.CARROUX,L.M.CHAVAS, JRNL AUTH 2 M.VON ITZSTEIN JRNL TITL THE CATALYTIC MECHANISM OF HUMAN PARAINFLUENZA VIRUS TYPE 3 JRNL TITL 2 HAEMAGGLUTININ-NEURAMINIDASE REVEALED. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 54 2936 2015 JRNL REFN ESSN 1521-3773 JRNL PMID 25676091 JRNL DOI 10.1002/ANIE.201412243 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 874 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1178 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6702 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 156 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : 0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.587 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.456 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.267 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.791 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7044 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6583 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9611 ; 1.464 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15207 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 853 ; 7.852 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 287 ;36.442 ;23.937 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1146 ;15.496 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;13.963 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1115 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7794 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1563 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3421 ; 2.227 ; 4.517 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3420 ; 2.226 ; 4.517 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4271 ; 3.784 ; 6.765 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17333 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 16.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRATE BUFFER, AMMONIUM SULPHATE, PEG REMARK 280 3000, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.63050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.15150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.63050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.92500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.15150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 125 REMARK 465 SER A 126 REMARK 465 GLU A 127 REMARK 465 ILE A 128 REMARK 465 THR A 129 REMARK 465 ILE A 130 REMARK 465 ARG A 131 REMARK 465 ASN A 132 REMARK 465 ASP A 133 REMARK 465 ASN A 134 REMARK 465 GLN A 135 REMARK 465 GLU A 136 REMARK 465 VAL A 137 REMARK 465 PRO A 138 REMARK 465 PRO A 139 REMARK 465 GLN A 140 REMARK 465 SER A 233 REMARK 465 ASP A 234 REMARK 465 LEU A 235 REMARK 465 HIS A 573 REMARK 465 HIS A 574 REMARK 465 HIS A 575 REMARK 465 HIS A 576 REMARK 465 HIS A 577 REMARK 465 HIS A 578 REMARK 465 ILE B 125 REMARK 465 SER B 126 REMARK 465 GLU B 127 REMARK 465 ILE B 128 REMARK 465 THR B 129 REMARK 465 ILE B 130 REMARK 465 ARG B 131 REMARK 465 ASN B 132 REMARK 465 ASP B 133 REMARK 465 ASN B 134 REMARK 465 GLN B 135 REMARK 465 GLU B 136 REMARK 465 VAL B 137 REMARK 465 PRO B 138 REMARK 465 PRO B 139 REMARK 465 GLN B 140 REMARK 465 ARG B 141 REMARK 465 LYS B 386 REMARK 465 GLY B 387 REMARK 465 LEU B 388 REMARK 465 ASN B 389 REMARK 465 SER B 572 REMARK 465 HIS B 573 REMARK 465 HIS B 574 REMARK 465 HIS B 575 REMARK 465 HIS B 576 REMARK 465 HIS B 577 REMARK 465 HIS B 578 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 530 C1 OEL A 606 2.01 REMARK 500 OH TYR B 530 C1 OEL B 606 2.04 REMARK 500 O4 NAG D 2 O5 BMA D 3 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 153 -39.52 -39.79 REMARK 500 LEU A 180 39.50 -96.98 REMARK 500 ASN A 262 -103.57 54.14 REMARK 500 VAL A 322 -50.26 91.34 REMARK 500 ASN A 345 72.45 -115.74 REMARK 500 CYS A 350 114.68 -160.57 REMARK 500 CYS A 355 76.69 -118.16 REMARK 500 PHE A 372 53.67 -112.28 REMARK 500 ASP A 374 40.58 27.99 REMARK 500 SER A 390 10.38 58.00 REMARK 500 TRP A 406 113.08 -30.41 REMARK 500 GLU A 409 153.37 -45.18 REMARK 500 SER A 427 -142.63 -127.23 REMARK 500 LEU A 432 106.81 -50.35 REMARK 500 SER A 456 -147.32 -147.78 REMARK 500 CYS A 463 68.68 -117.62 REMARK 500 SER A 468 48.07 -147.52 REMARK 500 THR A 475 -138.29 -163.62 REMARK 500 SER A 498 148.91 179.50 REMARK 500 ARG A 522 -106.67 -146.25 REMARK 500 LYS A 524 -39.91 -24.41 REMARK 500 TYR A 539 -88.38 42.81 REMARK 500 GLU A 549 96.72 -60.16 REMARK 500 ASP A 556 41.03 70.11 REMARK 500 LEU B 180 68.78 -105.83 REMARK 500 THR B 193 65.61 33.53 REMARK 500 ASN B 199 -163.35 -119.81 REMARK 500 LEU B 201 -54.06 -122.29 REMARK 500 ASN B 252 62.85 36.65 REMARK 500 ASN B 262 -101.39 57.91 REMARK 500 VAL B 322 -65.53 84.39 REMARK 500 PHE B 372 56.51 -112.67 REMARK 500 TRP B 406 130.92 -35.22 REMARK 500 SER B 427 -151.79 -107.98 REMARK 500 SER B 456 -157.16 -143.96 REMARK 500 ASN B 460 -154.42 -132.67 REMARK 500 SER B 468 25.16 -151.98 REMARK 500 THR B 475 -142.49 -147.59 REMARK 500 LYS B 500 45.93 -145.62 REMARK 500 ARG B 522 -108.62 -157.08 REMARK 500 LYS B 524 -37.87 -36.58 REMARK 500 TYR B 539 -105.26 53.83 REMARK 500 ASP B 556 37.35 76.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 279 O REMARK 620 2 ASP A 279 OD1 74.6 REMARK 620 3 SER A 282 O 75.2 147.5 REMARK 620 4 SER A 282 OG 78.2 115.6 69.0 REMARK 620 5 GLY A 284 O 150.9 114.8 87.1 117.0 REMARK 620 6 ALA A 316 O 75.7 80.6 80.6 144.1 78.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 279 O REMARK 620 2 ASP B 279 OD1 73.0 REMARK 620 3 SER B 282 O 70.7 143.5 REMARK 620 4 SER B 282 OG 79.8 105.9 63.6 REMARK 620 5 GLY B 284 O 156.7 121.5 94.3 110.0 REMARK 620 6 ALA B 316 O 76.3 88.6 87.0 147.0 85.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XJQ RELATED DB: PDB DBREF 4XJR A 125 572 UNP G8G134 G8G134_9PARA 125 572 DBREF 4XJR B 125 572 UNP G8G134 G8G134_9PARA 125 572 SEQADV 4XJR HIS A 573 UNP G8G134 EXPRESSION TAG SEQADV 4XJR HIS A 574 UNP G8G134 EXPRESSION TAG SEQADV 4XJR HIS A 575 UNP G8G134 EXPRESSION TAG SEQADV 4XJR HIS A 576 UNP G8G134 EXPRESSION TAG SEQADV 4XJR HIS A 577 UNP G8G134 EXPRESSION TAG SEQADV 4XJR HIS A 578 UNP G8G134 EXPRESSION TAG SEQADV 4XJR HIS B 573 UNP G8G134 EXPRESSION TAG SEQADV 4XJR HIS B 574 UNP G8G134 EXPRESSION TAG SEQADV 4XJR HIS B 575 UNP G8G134 EXPRESSION TAG SEQADV 4XJR HIS B 576 UNP G8G134 EXPRESSION TAG SEQADV 4XJR HIS B 577 UNP G8G134 EXPRESSION TAG SEQADV 4XJR HIS B 578 UNP G8G134 EXPRESSION TAG SEQRES 1 A 454 ILE SER GLU ILE THR ILE ARG ASN ASP ASN GLN GLU VAL SEQRES 2 A 454 PRO PRO GLN ARG ILE THR HIS ASP VAL GLY ILE LYS PRO SEQRES 3 A 454 LEU ASN PRO ASP ASP PHE TRP ARG CYS THR SER GLY LEU SEQRES 4 A 454 PRO SER LEU MET LYS THR PRO LYS ILE ARG LEU MET PRO SEQRES 5 A 454 GLY PRO GLY LEU LEU ALA MET PRO THR THR VAL ASP GLY SEQRES 6 A 454 CYS VAL ARG THR PRO SER LEU VAL ILE ASN ASP LEU ILE SEQRES 7 A 454 TYR ALA TYR THR SER ASN LEU ILE THR ARG GLY CYS GLN SEQRES 8 A 454 ASP ILE GLY LYS SER TYR GLN VAL LEU GLN ILE GLY ILE SEQRES 9 A 454 ILE THR VAL ASN SER ASP LEU VAL PRO ASP LEU ASN PRO SEQRES 10 A 454 ARG ILE SER HIS THR PHE ASN ILE ASN ASP ASN ARG LYS SEQRES 11 A 454 SER CYS SER LEU ALA LEU LEU ASN THR ASP VAL TYR GLN SEQRES 12 A 454 LEU CYS SER THR PRO LYS VAL ASP GLU ARG SER ASP TYR SEQRES 13 A 454 ALA SER SER GLY ILE GLU ASP ILE VAL LEU ASP ILE VAL SEQRES 14 A 454 ASN HIS ASP GLY SER ILE SER THR THR ARG PHE LYS ASN SEQRES 15 A 454 ASN ASN ILE SER PHE ASP GLN PRO TYR ALA ALA LEU TYR SEQRES 16 A 454 PRO SER VAL GLY PRO GLY ILE TYR TYR LYS GLY LYS ILE SEQRES 17 A 454 ILE PHE LEU GLY TYR GLY GLY LEU GLU HIS PRO ILE ASN SEQRES 18 A 454 GLU ASN ALA ILE CYS ASN THR THR GLY CYS PRO GLY LYS SEQRES 19 A 454 THR GLN ARG ASP CYS ASN GLN ALA SER HIS SER PRO TRP SEQRES 20 A 454 PHE SER ASP ARG ARG MET VAL ASN SER ILE ILE VAL VAL SEQRES 21 A 454 ASP LYS GLY LEU ASN SER ILE PRO LYS LEU LYS VAL TRP SEQRES 22 A 454 THR ILE SER MET ARG GLN ASN TYR TRP GLY SER GLU GLY SEQRES 23 A 454 ARG LEU LEU LEU LEU GLY ASN LYS ILE TYR ILE TYR THR SEQRES 24 A 454 ARG SER THR SER TRP HIS SER LYS LEU GLN LEU GLY ILE SEQRES 25 A 454 ILE ASP ILE THR ASP TYR SER ASP ILE ARG ILE LYS TRP SEQRES 26 A 454 THR TRP HIS ASN VAL LEU SER ARG PRO GLY ASN ASN GLU SEQRES 27 A 454 CYS PRO TRP GLY HIS SER CYS PRO ASP GLY CYS ILE THR SEQRES 28 A 454 GLY VAL TYR THR ASP ALA TYR PRO LEU ASN PRO THR GLY SEQRES 29 A 454 SER ILE VAL SER SER VAL ILE LEU ASP SER GLN LYS SER SEQRES 30 A 454 ARG VAL ASN PRO VAL ILE THR TYR SER THR ALA THR GLU SEQRES 31 A 454 ARG VAL ASN GLU LEU ALA ILE ARG ASN LYS THR LEU SER SEQRES 32 A 454 ALA GLY TYR THR THR THR SER CYS ILE THR HIS TYR ASN SEQRES 33 A 454 LYS GLY TYR CYS PHE HIS ILE VAL GLU ILE ASN HIS LYS SEQRES 34 A 454 SER LEU ASP THR PHE GLN PRO MET LEU PHE LYS THR GLU SEQRES 35 A 454 ILE PRO LYS SER CYS SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 454 ILE SER GLU ILE THR ILE ARG ASN ASP ASN GLN GLU VAL SEQRES 2 B 454 PRO PRO GLN ARG ILE THR HIS ASP VAL GLY ILE LYS PRO SEQRES 3 B 454 LEU ASN PRO ASP ASP PHE TRP ARG CYS THR SER GLY LEU SEQRES 4 B 454 PRO SER LEU MET LYS THR PRO LYS ILE ARG LEU MET PRO SEQRES 5 B 454 GLY PRO GLY LEU LEU ALA MET PRO THR THR VAL ASP GLY SEQRES 6 B 454 CYS VAL ARG THR PRO SER LEU VAL ILE ASN ASP LEU ILE SEQRES 7 B 454 TYR ALA TYR THR SER ASN LEU ILE THR ARG GLY CYS GLN SEQRES 8 B 454 ASP ILE GLY LYS SER TYR GLN VAL LEU GLN ILE GLY ILE SEQRES 9 B 454 ILE THR VAL ASN SER ASP LEU VAL PRO ASP LEU ASN PRO SEQRES 10 B 454 ARG ILE SER HIS THR PHE ASN ILE ASN ASP ASN ARG LYS SEQRES 11 B 454 SER CYS SER LEU ALA LEU LEU ASN THR ASP VAL TYR GLN SEQRES 12 B 454 LEU CYS SER THR PRO LYS VAL ASP GLU ARG SER ASP TYR SEQRES 13 B 454 ALA SER SER GLY ILE GLU ASP ILE VAL LEU ASP ILE VAL SEQRES 14 B 454 ASN HIS ASP GLY SER ILE SER THR THR ARG PHE LYS ASN SEQRES 15 B 454 ASN ASN ILE SER PHE ASP GLN PRO TYR ALA ALA LEU TYR SEQRES 16 B 454 PRO SER VAL GLY PRO GLY ILE TYR TYR LYS GLY LYS ILE SEQRES 17 B 454 ILE PHE LEU GLY TYR GLY GLY LEU GLU HIS PRO ILE ASN SEQRES 18 B 454 GLU ASN ALA ILE CYS ASN THR THR GLY CYS PRO GLY LYS SEQRES 19 B 454 THR GLN ARG ASP CYS ASN GLN ALA SER HIS SER PRO TRP SEQRES 20 B 454 PHE SER ASP ARG ARG MET VAL ASN SER ILE ILE VAL VAL SEQRES 21 B 454 ASP LYS GLY LEU ASN SER ILE PRO LYS LEU LYS VAL TRP SEQRES 22 B 454 THR ILE SER MET ARG GLN ASN TYR TRP GLY SER GLU GLY SEQRES 23 B 454 ARG LEU LEU LEU LEU GLY ASN LYS ILE TYR ILE TYR THR SEQRES 24 B 454 ARG SER THR SER TRP HIS SER LYS LEU GLN LEU GLY ILE SEQRES 25 B 454 ILE ASP ILE THR ASP TYR SER ASP ILE ARG ILE LYS TRP SEQRES 26 B 454 THR TRP HIS ASN VAL LEU SER ARG PRO GLY ASN ASN GLU SEQRES 27 B 454 CYS PRO TRP GLY HIS SER CYS PRO ASP GLY CYS ILE THR SEQRES 28 B 454 GLY VAL TYR THR ASP ALA TYR PRO LEU ASN PRO THR GLY SEQRES 29 B 454 SER ILE VAL SER SER VAL ILE LEU ASP SER GLN LYS SER SEQRES 30 B 454 ARG VAL ASN PRO VAL ILE THR TYR SER THR ALA THR GLU SEQRES 31 B 454 ARG VAL ASN GLU LEU ALA ILE ARG ASN LYS THR LEU SER SEQRES 32 B 454 ALA GLY TYR THR THR THR SER CYS ILE THR HIS TYR ASN SEQRES 33 B 454 LYS GLY TYR CYS PHE HIS ILE VAL GLU ILE ASN HIS LYS SEQRES 34 B 454 SER LEU ASP THR PHE GLN PRO MET LEU PHE LYS THR GLU SEQRES 35 B 454 ILE PRO LYS SER CYS SER HIS HIS HIS HIS HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET CA A 601 1 HET SO4 A 602 5 HET NAG A 605 14 HET OEL A 606 25 HET CA B 601 1 HET NAG B 605 14 HET OEL B 606 25 HET EDO B 607 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM OEL (6R)-2,6-ANHYDRO-3,4,5-TRIDEOXY-6-[(2S)-2,3- HETNAM 2 OEL DIHYDROXYPROPANOYL]-3-FLUORO-5-[(2-METHYLPROPANOYL) HETNAM 3 OEL AMINO]-4-TRIAZA-1,2-DIEN -2-IUM-1-YL-L-GULONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 5 CA 2(CA 2+) FORMUL 6 SO4 O4 S 2- FORMUL 8 OEL 2(C13 H20 F N4 O7 1+) FORMUL 12 EDO C2 H6 O2 FORMUL 13 HOH *5(H2 O) HELIX 1 AA1 ASN A 152 TRP A 157 1 6 HELIX 2 AA2 ASP A 275 SER A 282 1 8 HELIX 3 AA3 LYS A 305 ILE A 309 5 5 HELIX 4 AA4 THR A 359 SER A 367 1 9 HELIX 5 AA5 SER A 369 SER A 373 5 5 HELIX 6 AA6 LEU A 388 SER A 390 5 3 HELIX 7 AA7 ASN B 152 TRP B 157 1 6 HELIX 8 AA8 ASP B 275 SER B 282 1 8 HELIX 9 AA9 LYS B 305 ILE B 309 5 5 HELIX 10 AB1 THR B 359 SER B 367 1 9 HELIX 11 AB2 HIS B 368 SER B 373 5 6 SHEET 1 AA1 4 ILE A 148 PRO A 150 0 SHEET 2 AA1 4 ALA A 528 HIS A 538 -1 O THR A 537 N LYS A 149 SHEET 3 AA1 4 LYS A 541 HIS A 552 -1 O PHE A 545 N SER A 534 SHEET 4 AA1 4 THR A 557 GLU A 566 -1 O GLN A 559 N ILE A 550 SHEET 1 AA2 2 PRO A 164 LEU A 166 0 SHEET 2 AA2 2 LYS A 569 CYS A 571 -1 O SER A 570 N SER A 165 SHEET 1 AA3 2 PRO A 178 GLY A 179 0 SHEET 2 AA3 2 MET B 183 PRO B 184 -1 O MET B 183 N GLY A 179 SHEET 1 AA4 4 CYS A 190 ILE A 198 0 SHEET 2 AA4 4 TYR A 203 ILE A 210 -1 O ILE A 210 N CYS A 190 SHEET 3 AA4 4 TYR A 221 THR A 230 -1 O GLN A 225 N TYR A 205 SHEET 4 AA4 4 ASP A 238 THR A 246 -1 O ARG A 242 N ILE A 226 SHEET 1 AA5 4 LYS A 254 LEU A 261 0 SHEET 2 AA5 4 ASP A 264 SER A 270 -1 O TYR A 266 N ALA A 259 SHEET 3 AA5 4 ILE A 288 VAL A 293 -1 O VAL A 289 N CYS A 269 SHEET 4 AA5 4 THR A 302 PHE A 304 -1 O PHE A 304 N ILE A 288 SHEET 1 AA6 5 SER A 310 PHE A 311 0 SHEET 2 AA6 5 PRO A 392 THR A 398 1 O VAL A 396 N SER A 310 SHEET 3 AA6 5 ARG A 376 LYS A 386 -1 N ASP A 385 O LYS A 393 SHEET 4 AA6 5 LYS A 331 LEU A 340 -1 N PHE A 334 O ILE A 382 SHEET 5 AA6 5 TYR A 315 PRO A 320 -1 N TYR A 319 O TYR A 337 SHEET 1 AA7 5 SER A 310 PHE A 311 0 SHEET 2 AA7 5 PRO A 392 THR A 398 1 O VAL A 396 N SER A 310 SHEET 3 AA7 5 ARG A 376 LYS A 386 -1 N ASP A 385 O LYS A 393 SHEET 4 AA7 5 LYS A 331 LEU A 340 -1 N PHE A 334 O ILE A 382 SHEET 5 AA7 5 ILE A 326 TYR A 328 -1 N TYR A 328 O LYS A 331 SHEET 1 AA8 4 GLY A 410 LEU A 415 0 SHEET 2 AA8 4 LYS A 418 THR A 423 -1 O TYR A 420 N LEU A 413 SHEET 3 AA8 4 GLN A 433 ASP A 438 -1 O GLY A 435 N ILE A 421 SHEET 4 AA8 4 ARG A 446 THR A 450 -1 O ARG A 446 N ASP A 438 SHEET 1 AA9 4 ALA A 481 PRO A 483 0 SHEET 2 AA9 4 ILE A 490 LEU A 496 -1 O SER A 492 N TYR A 482 SHEET 3 AA9 4 PRO A 505 THR A 511 -1 O THR A 508 N SER A 493 SHEET 4 AA9 4 ARG A 515 ALA A 520 -1 O LEU A 519 N ILE A 507 SHEET 1 AB1 4 ILE B 148 PRO B 150 0 SHEET 2 AB1 4 ALA B 528 HIS B 538 -1 O THR B 537 N LYS B 149 SHEET 3 AB1 4 LYS B 541 HIS B 552 -1 O PHE B 545 N SER B 534 SHEET 4 AB1 4 THR B 557 GLU B 566 -1 O THR B 557 N HIS B 552 SHEET 1 AB2 2 SER B 165 LEU B 166 0 SHEET 2 AB2 2 LYS B 569 SER B 570 -1 O SER B 570 N SER B 165 SHEET 1 AB3 4 CYS B 190 ILE B 198 0 SHEET 2 AB3 4 TYR B 203 ILE B 210 -1 O ASN B 208 N ARG B 192 SHEET 3 AB3 4 SER B 220 VAL B 231 -1 O GLN B 225 N TYR B 205 SHEET 4 AB3 4 PRO B 237 PHE B 247 -1 O ILE B 243 N ILE B 226 SHEET 1 AB4 4 LYS B 254 LEU B 261 0 SHEET 2 AB4 4 ASP B 264 SER B 270 -1 O TYR B 266 N ALA B 259 SHEET 3 AB4 4 ILE B 288 VAL B 293 -1 O VAL B 289 N CYS B 269 SHEET 4 AB4 4 ILE B 299 PHE B 304 -1 O SER B 300 N ILE B 292 SHEET 1 AB5 5 SER B 310 PHE B 311 0 SHEET 2 AB5 5 LEU B 394 THR B 398 1 O LEU B 394 N SER B 310 SHEET 3 AB5 5 MET B 377 VAL B 384 -1 N ILE B 381 O TRP B 397 SHEET 4 AB5 5 LYS B 331 LEU B 340 -1 N GLY B 338 O VAL B 378 SHEET 5 AB5 5 TYR B 315 PRO B 320 -1 N TYR B 319 O TYR B 337 SHEET 1 AB6 5 SER B 310 PHE B 311 0 SHEET 2 AB6 5 LEU B 394 THR B 398 1 O LEU B 394 N SER B 310 SHEET 3 AB6 5 MET B 377 VAL B 384 -1 N ILE B 381 O TRP B 397 SHEET 4 AB6 5 LYS B 331 LEU B 340 -1 N GLY B 338 O VAL B 378 SHEET 5 AB6 5 ILE B 326 TYR B 328 -1 N ILE B 326 O ILE B 333 SHEET 1 AB7 4 GLY B 410 LEU B 415 0 SHEET 2 AB7 4 LYS B 418 THR B 423 -1 O TYR B 420 N LEU B 413 SHEET 3 AB7 4 GLN B 433 ASP B 438 -1 O GLY B 435 N ILE B 421 SHEET 4 AB7 4 ARG B 446 THR B 450 -1 O ARG B 446 N ASP B 438 SHEET 1 AB8 4 ALA B 481 PRO B 483 0 SHEET 2 AB8 4 ILE B 490 LEU B 496 -1 O SER B 492 N TYR B 482 SHEET 3 AB8 4 PRO B 505 THR B 511 -1 O THR B 508 N SER B 493 SHEET 4 AB8 4 ASN B 517 ALA B 520 -1 O ASN B 517 N TYR B 509 SSBOND 1 CYS A 159 CYS A 571 1555 1555 2.03 SSBOND 2 CYS A 190 CYS A 214 1555 1555 2.02 SSBOND 3 CYS A 256 CYS A 269 1555 1555 2.04 SSBOND 4 CYS A 350 CYS A 363 1555 1555 2.02 SSBOND 5 CYS A 355 CYS A 469 1555 1555 2.05 SSBOND 6 CYS A 463 CYS A 473 1555 1555 2.07 SSBOND 7 CYS A 535 CYS A 544 1555 1555 2.06 SSBOND 8 CYS B 159 CYS B 571 1555 1555 2.02 SSBOND 9 CYS B 190 CYS B 214 1555 1555 2.05 SSBOND 10 CYS B 256 CYS B 269 1555 1555 2.05 SSBOND 11 CYS B 350 CYS B 363 1555 1555 2.04 SSBOND 12 CYS B 355 CYS B 469 1555 1555 2.01 SSBOND 13 CYS B 463 CYS B 473 1555 1555 2.02 SSBOND 14 CYS B 535 CYS B 544 1555 1555 2.07 LINK ND2 ASN A 351 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 523 C1 NAG A 605 1555 1555 1.46 LINK OH TYR A 530 C2 OEL A 606 1555 1555 1.39 LINK ND2 ASN B 351 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN B 523 C1 NAG B 605 1555 1555 1.45 LINK OH TYR B 530 C2 OEL B 606 1555 1555 1.39 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O3 NAG D 2 C1 BMA D 3 1555 1555 1.47 LINK O ASP A 279 CA CA A 601 1555 1555 2.41 LINK OD1 ASP A 279 CA CA A 601 1555 1555 2.47 LINK O SER A 282 CA CA A 601 1555 1555 2.32 LINK OG SER A 282 CA CA A 601 1555 1555 2.50 LINK O GLY A 284 CA CA A 601 1555 1555 2.34 LINK O ALA A 316 CA CA A 601 1555 1555 2.36 LINK O ASP B 279 CA CA B 601 1555 1555 2.41 LINK OD1 ASP B 279 CA CA B 601 1555 1555 2.20 LINK O SER B 282 CA CA B 601 1555 1555 2.25 LINK OG SER B 282 CA CA B 601 1555 1555 2.77 LINK O GLY B 284 CA CA B 601 1555 1555 2.43 LINK O ALA B 316 CA CA B 601 1555 1555 2.41 CISPEP 1 THR A 169 PRO A 170 0 7.96 CISPEP 2 THR B 160 SER B 161 0 1.34 CISPEP 3 THR B 169 PRO B 170 0 5.55 CRYST1 81.850 98.303 103.261 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012217 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009684 0.00000