HEADER TRANSPORT PROTEIN 12-JAN-15 4XKP TITLE CRYSTAL STRUCTURE OF NIKA FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH TITLE 2 NI(L-HIS)2 (CO-CRYSTALLIZATION WITH NI(II) AND BHI MEDIUM TITLE 3 SUPERNATANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICKEL ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-491; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS USA300-ISMMS1; SOURCE 3 ORGANISM_TAXID: 1458279; SOURCE 4 GENE: AZ30_01190; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EXTRACYTOPLASMIC NICKEL-BINDING PROTEIN, NICKEL IMPORT, ABC-TYPE KEYWDS 2 IMPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.LEBRETTE,C.CAVAZZA REVDAT 4 10-JAN-24 4XKP 1 LINK REVDAT 3 15-APR-15 4XKP 1 JRNL REVDAT 2 18-FEB-15 4XKP 1 JRNL REVDAT 1 11-FEB-15 4XKP 0 JRNL AUTH H.LEBRETTE,E.BOREZEE-DURANT,L.MARTIN,P.RICHAUD,E.BOERI ERBA, JRNL AUTH 2 C.CAVAZZA JRNL TITL NOVEL INSIGHTS INTO NICKEL IMPORT IN STAPHYLOCOCCUS AUREUS: JRNL TITL 2 THE POSITIVE ROLE OF FREE HISTIDINE AND STRUCTURAL JRNL TITL 3 CHARACTERIZATION OF A NEW THIAZOLIDINE-TYPE NICKEL CHELATOR. JRNL REF METALLOMICS V. 7 613 2015 JRNL REFN ESSN 1756-591X JRNL PMID 25611161 JRNL DOI 10.1039/C4MT00295D REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7285 - 4.5779 1.00 2819 149 0.1660 0.1880 REMARK 3 2 4.5779 - 3.6341 1.00 2704 142 0.1346 0.1708 REMARK 3 3 3.6341 - 3.1748 1.00 2665 141 0.1422 0.1513 REMARK 3 4 3.1748 - 2.8846 1.00 2649 139 0.1558 0.2098 REMARK 3 5 2.8846 - 2.6779 1.00 2625 138 0.1571 0.1918 REMARK 3 6 2.6779 - 2.5200 1.00 2638 139 0.1641 0.1968 REMARK 3 7 2.5200 - 2.3938 1.00 2603 137 0.1617 0.1864 REMARK 3 8 2.3938 - 2.2896 1.00 2625 138 0.1628 0.2041 REMARK 3 9 2.2896 - 2.2015 1.00 2628 138 0.1592 0.2018 REMARK 3 10 2.2015 - 2.1255 1.00 2593 137 0.1562 0.2159 REMARK 3 11 2.1255 - 2.0590 1.00 2614 137 0.1728 0.2142 REMARK 3 12 2.0590 - 2.0002 1.00 2590 137 0.1747 0.2143 REMARK 3 13 2.0002 - 1.9475 1.00 2595 136 0.1877 0.2116 REMARK 3 14 1.9475 - 1.9000 1.00 2598 137 0.2143 0.2534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3963 REMARK 3 ANGLE : 0.941 5355 REMARK 3 CHIRALITY : 0.039 586 REMARK 3 PLANARITY : 0.004 692 REMARK 3 DIHEDRAL : 13.627 1534 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4803 48.9281 18.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.1078 T22: 0.1303 REMARK 3 T33: 0.1254 T12: 0.0200 REMARK 3 T13: 0.0106 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.3219 L22: 0.7113 REMARK 3 L33: 0.6491 L12: -0.1400 REMARK 3 L13: -0.1158 L23: 0.0228 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: -0.0054 S13: 0.0006 REMARK 3 S21: 0.0990 S22: 0.0285 S23: -0.0054 REMARK 3 S31: 0.0204 S32: 0.0413 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4116 70.1006 7.6077 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.1022 REMARK 3 T33: 0.1076 T12: -0.0156 REMARK 3 T13: 0.0049 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.3917 L22: 0.6808 REMARK 3 L33: 0.5453 L12: -0.0924 REMARK 3 L13: 0.0324 L23: 0.0739 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: 0.0159 S13: 0.0417 REMARK 3 S21: -0.0522 S22: 0.0077 S23: -0.0241 REMARK 3 S31: -0.0724 S32: 0.0316 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38955 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 13.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.71400 REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OFJ REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 3350, 0.1 M HEPES PH 7.0 - REMARK 280 PROTEIN PRE-INCUBATED WITH NICL2 AND BHI MEDIUM SUPERNATANT., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.17000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.17000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 MET A 4 REMARK 465 HIS A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 ARG A 473 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 9 42.78 -109.37 REMARK 500 LEU A 17 64.22 67.69 REMARK 500 LYS A 20 -85.47 -97.76 REMARK 500 ARG A 165 -56.66 -134.58 REMARK 500 THR A 277 -64.11 -126.93 REMARK 500 ILE A 374 71.15 -154.74 REMARK 500 ILE A 462 -51.37 -121.10 REMARK 500 LEU A 464 -58.11 -147.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 502 ND1 REMARK 620 2 HIS A 502 N 88.5 REMARK 620 3 HIS A 502 O 90.8 82.5 REMARK 620 4 HIS A 503 ND1 93.2 97.7 176.1 REMARK 620 5 HIS A 503 N 95.3 175.9 96.1 83.4 REMARK 620 6 HIS A 503 OXT 176.7 93.3 86.8 89.3 82.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HIS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HIS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 513 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OFJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN CO-PURIFIED WITH NI(L-HIS)2 REMARK 900 RELATED ID: 4XKN RELATED DB: PDB REMARK 900 THE SAME PROTEIN, CO-CRYSTALLIZATION WITH NI(II) AND L-HISTIDINE REMARK 900 RELATED ID: 4XKQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN, CO-CRYSTALLIZATION WITH NI(II) AND CD MEDIUM REMARK 900 SUPERNATANT REMARK 900 RELATED ID: 4XKR RELATED DB: PDB REMARK 900 THE SAME PROTEIN, CO-CRYSTALLIZATION WITH NI(II) AND CDDELTAHIS REMARK 900 MEDIUM SUPERNATANT DBREF 4XKP A 1 473 UNP W6DY02 W6DY02_STAAU 19 491 SEQRES 1 A 473 CYS GLY SER MET HIS SER SER GLY LYS ASP LEU ASN ILE SEQRES 2 A 473 SER LEU PRO LEU LYS THR LYS SER ILE ALA PRO TYR GLU SEQRES 3 A 473 THR ASP VAL PRO VAL LYS ILE GLY ALA ALA GLU SER LEU SEQRES 4 A 473 PHE LYS THR ASN ASP GLN GLY LYS ILE GLU LYS ALA LEU SEQRES 5 A 473 VAL LYS SER TYR HIS GLN PRO ASN ASP THR THR LEU ASP SEQRES 6 A 473 ILE GLU LEU LYS ASP ASN ILE LYS PHE GLN ASN GLY GLN SEQRES 7 A 473 LYS LEU THR ALA GLU LYS VAL LYS SER SER LEU GLU ASN SEQRES 8 A 473 SER MET LYS LYS SER ASP LEU VAL LYS TYR SER LEU PRO SEQRES 9 A 473 ILE SER SER ILE THR ALA LYS GLY GLN LYS LEU THR ILE SEQRES 10 A 473 LYS THR ASN SER ALA TYR PRO GLU LEU VAL SER GLU LEU SEQRES 11 A 473 ALA ASN PRO PHE MET ALA ILE TYR ASP THR ASP ALA LYS SEQRES 12 A 473 SER ASP VAL ASN GLN THR PRO VAL GLY THR GLY PRO TYR SEQRES 13 A 473 GLN ILE LYS ASP TYR LYS GLN SER ARG LYS ILE SER LEU SEQRES 14 A 473 SER ASN PHE LYS ASP TYR TRP GLN GLY LYS PRO LYS LEU SEQRES 15 A 473 ASP HIS ILE THR VAL THR TYR GLN GLU ASP GLY ASN ASN SEQRES 16 A 473 ARG VAL ARG ASN LEU GLU SER GLN LYS ASP ASP LEU ILE SEQRES 17 A 473 THR ASP VAL PRO VAL ASN LYS VAL GLN ASP ILE GLU ASN SEQRES 18 A 473 ASN GLN ASN LEU LYS VAL SER LYS GLU SER GLY PHE ARG SEQRES 19 A 473 THR SER LEU LEU MET TYR ASN HIS THR ASN LYS LYS MET SEQRES 20 A 473 THR LYS SER VAL ARG GLU ALA LEU ASP HIS ILE ILE ASP SEQRES 21 A 473 ARG GLN GLY ILE ALA ASP HIS ILE TYR GLN GLY TYR ALA SEQRES 22 A 473 LYS PRO ALA THR SER PRO PHE ASN ASP LYS ILE PRO TYR SEQRES 23 A 473 ILE LYS GLU PRO LYS LEU THR LYS GLN ASN ILE GLU GLN SEQRES 24 A 473 ALA LYS MET LEU LEU ALA LYS ASP GLY TYR THR LYS GLU SEQRES 25 A 473 HIS PRO LEU LYS ILE LYS LEU ILE THR TYR ASP GLY ARG SEQRES 26 A 473 PRO GLU LEU SER LYS ILE ALA GLN VAL LEU GLN SER ASP SEQRES 27 A 473 ALA LYS LYS ALA ASN ILE GLU ILE ASP ILE LYS SER VAL SEQRES 28 A 473 ASP ASP ILE GLU GLY TYR LEU LYS ASP ARG SER ALA TRP SEQRES 29 A 473 ASP ALA THR MET TYR SER PHE GLY THR ILE PRO ARG GLY SEQRES 30 A 473 ASP THR GLY TYR PHE PHE ASN GLN ALA TYR LYS LYS ASP SEQRES 31 A 473 GLY ALA ILE ASN LYS GLY ASP TYR ASN ASN SER ASN VAL SEQRES 32 A 473 ASP ASP LEU ILE ASN GLN LEU ASN HIS THR VAL ASP VAL SEQRES 33 A 473 LYS GLU ARG HIS ASN ILE SER ASN ASP ILE ILE LYS LEU SEQRES 34 A 473 SER SER ARG ASP VAL PRO ASN SER TYR ILE ALA TYR ASN SEQRES 35 A 473 ASP GLN ILE VAL ALA ALA ASN SER LYS VAL LYS ASN TYR SEQRES 36 A 473 LYS VAL THR PRO GLU GLY ILE TYR LEU ILE ASP TYR ARG SEQRES 37 A 473 THR THR ILE GLU ARG HET NI A 501 1 HET HIS A 502 11 HET HIS A 503 11 HET GOL A 504 6 HET GOL A 505 6 HET EPE A 506 15 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET GOL A 511 6 HET GOL A 512 6 HET GOL A 513 6 HETNAM NI NICKEL (II) ION HETNAM HIS HISTIDINE HETNAM GOL GLYCEROL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES FORMUL 2 NI NI 2+ FORMUL 3 HIS 2(C6 H10 N3 O2 1+) FORMUL 5 GOL 9(C3 H8 O3) FORMUL 7 EPE C8 H18 N2 O4 S FORMUL 15 HOH *415(H2 O) HELIX 1 AA1 ASP A 28 ILE A 33 1 6 HELIX 2 AA2 THR A 81 SER A 96 1 16 HELIX 3 AA3 SER A 96 LEU A 103 1 8 HELIX 4 AA4 GLU A 125 LEU A 130 1 6 HELIX 5 AA5 ALA A 131 ALA A 136 5 6 HELIX 6 AA6 ASP A 192 SER A 202 1 11 HELIX 7 AA7 PRO A 212 ASN A 214 5 3 HELIX 8 AA8 LYS A 215 ASN A 221 1 7 HELIX 9 AA9 THR A 248 ILE A 259 1 12 HELIX 10 AB1 ASP A 260 ILE A 268 1 9 HELIX 11 AB2 ASN A 296 ASP A 307 1 12 HELIX 12 AB3 GLU A 327 LYS A 341 1 15 HELIX 13 AB4 ASP A 353 LYS A 359 1 7 HELIX 14 AB5 THR A 379 TYR A 387 1 9 HELIX 15 AB6 ASN A 400 HIS A 412 1 13 HELIX 16 AB7 ASP A 415 VAL A 434 1 20 SHEET 1 AA1 7 TYR A 156 LYS A 162 0 SHEET 2 AA1 7 LYS A 166 ASN A 171 -1 O SER A 168 N LYS A 159 SHEET 3 AA1 7 HIS A 184 TYR A 189 -1 O VAL A 187 N ILE A 167 SHEET 4 AA1 7 ASP A 10 LEU A 15 1 N ILE A 13 O THR A 186 SHEET 5 AA1 7 LEU A 207 ILE A 208 1 O LEU A 207 N SER A 14 SHEET 6 AA1 7 GLN A 444 ASN A 449 -1 O ALA A 447 N ILE A 208 SHEET 7 AA1 7 LEU A 225 GLU A 230 -1 N SER A 228 O VAL A 446 SHEET 1 AA2 2 PHE A 40 THR A 42 0 SHEET 2 AA2 2 ILE A 48 LYS A 50 -1 O GLU A 49 N LYS A 41 SHEET 1 AA3 4 VAL A 53 ASN A 60 0 SHEET 2 AA3 4 THR A 63 LEU A 68 -1 O GLU A 67 N SER A 55 SHEET 3 AA3 4 LYS A 114 LYS A 118 -1 O ILE A 117 N LEU A 64 SHEET 4 AA3 4 SER A 107 LYS A 111 -1 N SER A 107 O LYS A 118 SHEET 1 AA4 6 ALA A 273 PRO A 275 0 SHEET 2 AA4 6 ASN A 436 ASN A 442 -1 O TYR A 441 N LYS A 274 SHEET 3 AA4 6 ARG A 234 TYR A 240 -1 N LEU A 238 O SER A 437 SHEET 4 AA4 6 ALA A 366 GLY A 372 -1 O THR A 367 N MET A 239 SHEET 5 AA4 6 LEU A 315 THR A 321 1 N ILE A 320 O MET A 368 SHEET 6 AA4 6 ILE A 344 SER A 350 1 O GLU A 345 N LEU A 315 SHEET 1 AA5 2 VAL A 452 LYS A 453 0 SHEET 2 AA5 2 THR A 470 ILE A 471 -1 O THR A 470 N LYS A 453 LINK NI NI A 501 ND1 HIS A 502 1555 1555 2.05 LINK NI NI A 501 N HIS A 502 1555 1555 2.02 LINK NI NI A 501 O HIS A 502 1555 1555 2.11 LINK NI NI A 501 ND1 HIS A 503 1555 1555 2.14 LINK NI NI A 501 N HIS A 503 1555 1555 2.18 LINK NI NI A 501 OXT HIS A 503 1555 1555 1.95 SITE 1 AC1 2 HIS A 502 HIS A 503 SITE 1 AC2 11 LEU A 17 ARG A 234 TYR A 322 ARG A 325 SITE 2 AC2 11 ILE A 354 GLU A 355 TYR A 369 SER A 370 SITE 3 AC2 11 NI A 501 HIS A 503 HOH A 777 SITE 1 AC3 12 PHE A 134 ARG A 234 GLU A 355 SER A 370 SITE 2 AC3 12 PHE A 371 GLY A 372 ILE A 393 NI A 501 SITE 3 AC3 12 HIS A 502 HOH A 896 HOH A 907 HOH A1003 SITE 1 AC4 4 LYS A 54 LYS A 69 ASP A 70 ASN A 402 SITE 1 AC5 7 GLU A 83 ALA A 110 GLN A 295 ASP A 338 SITE 2 AC5 7 LYS A 341 HOH A 645 HOH A 662 SITE 1 AC6 7 ILE A 48 GLU A 49 LYS A 50 TYR A 56 SITE 2 AC6 7 TYR A 101 ASP A 390 HOH A 630 SITE 1 AC7 9 ASP A 256 ARG A 261 THR A 277 PRO A 290 SITE 2 AC7 9 LYS A 291 THR A 293 SER A 431 HOH A 733 SITE 3 AC7 9 HOH A 744 SITE 1 AC8 9 LYS A 32 LYS A 456 GLY A 461 ILE A 462 SITE 2 AC8 9 TYR A 463 HOH A 767 HOH A 862 HOH A 948 SITE 3 AC8 9 HOH A 951 SITE 1 AC9 6 ASP A 260 GLY A 263 HIS A 267 VAL A 334 SITE 2 AC9 6 HOH A 612 HOH A 740 SITE 1 AD1 6 THR A 109 ALA A 110 LYS A 114 LEU A 115 SITE 2 AD1 6 THR A 116 LYS A 245 SITE 1 AD2 4 LYS A 318 LYS A 349 TYR A 357 HOH A 602 SITE 1 AD3 4 LYS A 226 LYS A 453 ASN A 454 TYR A 455 SITE 1 AD4 7 LYS A 143 LYS A 349 VAL A 351 ASP A 352 SITE 2 AD4 7 ASP A 353 HOH A 607 HOH A 897 CRYST1 62.340 67.240 115.210 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008680 0.00000