HEADER VIRAL PROTEIN 12-JAN-15 4XKV TITLE TAILSPIKE PROTEIN MUTANT D339N OF E. COLI BACTERIOPHAGE HK620 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL SPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAD BINDING, UNP RESIDUES 1-596; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA PHAGE HK620; SOURCE 3 ORGANISM_TAXID: 155148; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS BETA HELIX, PROTEIN-CARBOHYDRATE COMPLEX, PECTIN LYASE FOLD, METAL KEYWDS 2 BINDING PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.GOHLKE,N.K.BROEKER,U.HEINEMANN,R.SECKLER,S.BARBIRZ REVDAT 3 10-JAN-24 4XKV 1 REMARK REVDAT 2 06-SEP-17 4XKV 1 REMARK LINK SITE ATOM REVDAT 1 20-JAN-16 4XKV 0 JRNL AUTH U.GOHLKE,N.K.BROEKER,S.KUNSTMANN,M.SANTER,U.HEINEMANN, JRNL AUTH 2 R.LIPOWSKI,R.SECKLER,S.BARBIRZ JRNL TITL ENTHALPIC COST OF WATER REMOVAL FROM A HYDROPHOBIC GLUCOSE JRNL TITL 2 BINDING CAVITY ON HK620 TAILSPIKE PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.K.BROEKER,U.GOHLKE,J.J.MUELLER,C.UETRECHT,U.HEINEMANN, REMARK 1 AUTH 2 R.SECKLER,S.BARBIRZ REMARK 1 TITL SINGLE AMINO ACID EXCHANGE IN BACTERIOPHAGE HK620 TAILSPIKE REMARK 1 TITL 2 PROTEIN RESULTS IN THOUSAND-FOLD INCREASE OF ITS REMARK 1 TITL 3 OLIGOSACCHARIDE AFFINITY. REMARK 1 REF GLYCOBIOLOGY V. 23 59 2013 REMARK 1 REFN ISSN 0959-6658 REMARK 1 PMID 22923442 REMARK 1 DOI 10.1093/GLYCOB/CWS126 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.1 REMARK 3 NUMBER OF REFLECTIONS : 26530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1354 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1705 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4523 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -2.06000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.477 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.284 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.209 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.096 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4687 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4198 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6390 ; 0.998 ; 1.917 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9592 ; 0.699 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 605 ; 6.267 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;35.639 ;24.241 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 666 ;12.439 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.798 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 699 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5625 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1207 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2409 ; 0.214 ; 1.408 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2410 ; 0.214 ; 1.409 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3017 ; 0.374 ; 2.110 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 32.7697 21.7550 -12.2268 REMARK 3 T TENSOR REMARK 3 T11: 0.2581 T22: 0.1975 REMARK 3 T33: 0.0303 T12: 0.0072 REMARK 3 T13: -0.0092 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 4.0216 L22: 7.1535 REMARK 3 L33: 2.6583 L12: 0.4740 REMARK 3 L13: -0.4771 L23: -4.3515 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: 0.4588 S13: 0.2692 REMARK 3 S21: -0.7128 S22: 0.2237 S23: 0.1713 REMARK 3 S31: 0.4504 S32: -0.1710 S33: -0.1190 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5714 38.1477 8.5010 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.1102 REMARK 3 T33: 0.0425 T12: -0.0013 REMARK 3 T13: -0.0446 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.3171 L22: 1.0721 REMARK 3 L33: 0.6052 L12: -0.0700 REMARK 3 L13: 0.1542 L23: 0.1521 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: 0.0587 S13: 0.0735 REMARK 3 S21: -0.0628 S22: -0.0612 S23: -0.0133 REMARK 3 S31: -0.1888 S32: -0.0723 S33: 0.1291 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 253 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7535 40.0804 28.5708 REMARK 3 T TENSOR REMARK 3 T11: 0.1003 T22: 0.0939 REMARK 3 T33: 0.0375 T12: 0.0141 REMARK 3 T13: -0.0301 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.8495 L22: 0.7885 REMARK 3 L33: 0.8286 L12: 0.1328 REMARK 3 L13: -0.0238 L23: -0.1442 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.0772 S13: 0.0944 REMARK 3 S21: -0.0465 S22: -0.0654 S23: 0.0072 REMARK 3 S31: -0.1674 S32: 0.0230 S33: 0.0717 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 379 A 466 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2220 37.9613 43.8707 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.0678 REMARK 3 T33: 0.0700 T12: -0.0017 REMARK 3 T13: -0.0102 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.3874 L22: 0.6732 REMARK 3 L33: 0.9451 L12: 0.1029 REMARK 3 L13: 0.2115 L23: 0.1620 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.0714 S13: 0.1070 REMARK 3 S21: -0.0613 S22: -0.0274 S23: 0.0738 REMARK 3 S31: -0.0726 S32: -0.0262 S33: 0.0489 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 467 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4473 39.5625 54.3083 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: 0.0868 REMARK 3 T33: 0.0820 T12: 0.0188 REMARK 3 T13: -0.0022 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.5651 L22: 0.6996 REMARK 3 L33: 0.5842 L12: 0.2485 REMARK 3 L13: 0.2569 L23: 0.2225 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: -0.0137 S13: 0.1756 REMARK 3 S21: -0.0178 S22: -0.0502 S23: 0.0292 REMARK 3 S31: -0.1287 S32: -0.0679 S33: 0.0209 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 528 A 540 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6806 42.4578 60.8243 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.1174 REMARK 3 T33: 0.0556 T12: -0.0018 REMARK 3 T13: -0.0210 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 4.7722 L22: 5.0346 REMARK 3 L33: 1.9840 L12: -0.8487 REMARK 3 L13: -0.6837 L23: 0.0533 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.1343 S13: 0.4043 REMARK 3 S21: 0.0730 S22: -0.0259 S23: 0.0189 REMARK 3 S31: -0.1957 S32: 0.1213 S33: 0.0252 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 541 A 645 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9580 36.6383 73.5075 REMARK 3 T TENSOR REMARK 3 T11: 0.0638 T22: 0.0638 REMARK 3 T33: 0.0823 T12: 0.0030 REMARK 3 T13: -0.0096 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.0959 L22: 0.2064 REMARK 3 L33: 0.2270 L12: -0.0388 REMARK 3 L13: 0.0292 L23: -0.1712 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: -0.0271 S13: 0.0209 REMARK 3 S21: 0.0212 S22: -0.0217 S23: -0.0063 REMARK 3 S31: -0.0715 S32: 0.0143 S33: 0.0399 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 646 A 709 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0847 30.4450 91.4262 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0961 REMARK 3 T33: 0.0787 T12: -0.0236 REMARK 3 T13: 0.0015 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.5191 L22: 0.2208 REMARK 3 L33: 1.1311 L12: -0.0687 REMARK 3 L13: 0.1381 L23: 0.3777 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: -0.0090 S13: 0.0334 REMARK 3 S21: 0.0342 S22: -0.0234 S23: -0.0220 REMARK 3 S31: -0.0365 S32: 0.0897 S33: -0.0172 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4XKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26540 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 43.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.20200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4XM3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 3.5 M SODIUM FORMATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y+1,X-Y,Z AND -X+ REMARK 300 Y+1,-X+1,Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 73.91700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 36.95850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 64.01400 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 959 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1116 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 303 73.49 59.26 REMARK 500 ASN A 315 48.92 32.47 REMARK 500 SER A 319 147.57 -171.67 REMARK 500 ASP A 441 65.39 67.44 REMARK 500 PRO A 460 151.79 -49.43 REMARK 500 ASP A 519 76.65 -117.44 REMARK 500 MET A 523 -78.09 -92.89 REMARK 500 THR A 530 -121.71 53.76 REMARK 500 ASN A 552 -3.08 76.69 REMARK 500 THR A 613 -73.91 -111.52 REMARK 500 THR A 678 -164.63 -126.54 REMARK 500 THR A 678 -165.91 -119.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1162 DISTANCE = 6.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 805 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 565 O REMARK 620 2 SER A 592 O 72.6 REMARK 620 3 GLN A 594 OE1 71.8 83.6 REMARK 620 4 HOH A1123 O 98.2 87.5 168.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 805 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VIJ RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 REMARK 900 RELATED ID: 2VJJ RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH REMARK 900 HEXASACCHARIDE REMARK 900 RELATED ID: 2X6W RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN MUTANT E372Q OF E.COLI BACTERIOPHAGE HK620 IN REMARK 900 COMPLEX WITH HEXASACCHARIDE REMARK 900 RELATED ID: 2X6X RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN MUTANT D339N OF E.COLI BACTERIOPHAGE HK620 IN REMARK 900 COMPLEX WITH HEXASACCHARIDE REMARK 900 RELATED ID: 2X6Y RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN MUTANT D339A OF E.COLI BACTERIOPHAGE HK620 IN REMARK 900 COMPLEX WITH HEXASACCHARIDE REMARK 900 RELATED ID: 2X85 RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF E. COLI BACTERIOPHAGE HK620 IN COMPLEX WITH REMARK 900 HEXASACCHARIDE REMARK 900 RELATED ID: 4AVZ RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN MUTANT E372Q OF E. COLI BACTERIOPHAGE HK620 REMARK 900 RELATED ID: 4PAT RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF E. COLI BACTERIOPHAGE HK620 IN COMPLEX WITH REMARK 900 PENTASACCHARIDE DBREF 4XKV A 114 709 UNP Q9AYY6 Q9AYY6_BPHK6 115 710 SEQADV 4XKV ASN A 339 UNP Q9AYY6 ASP 340 ENGINEERED MUTATION SEQRES 1 A 596 PHE ARG ALA ILE ILE GLU SER PRO GLU GLY ALA GLY HIS SEQRES 2 A 596 VAL GLY TYR GLN TYR ARG ARG ASN THR GLY SER THR MET SEQRES 3 A 596 ARG MET VAL SER ASP VAL LEU ASP GLU ARG VAL SER LEU SEQRES 4 A 596 TRP ASP PHE HIS CYS ASP PRO SER GLY ASN VAL ILE GLN SEQRES 5 A 596 PRO GLY PRO ASN VAL ASP SER ARG GLN TYR LEU GLN ALA SEQRES 6 A 596 ALA ILE ASP TYR VAL SER SER ASN GLY GLY GLY THR ILE SEQRES 7 A 596 THR ILE PRO ALA GLY TYR THR TRP TYR LEU GLY SER TYR SEQRES 8 A 596 GLY VAL GLY GLY ILE ALA GLY HIS SER GLY ILE ILE GLN SEQRES 9 A 596 LEU ARG SER ASN VAL ASN LEU ASN ILE GLU GLY ARG ILE SEQRES 10 A 596 HIS LEU SER PRO PHE PHE ASP LEU LYS PRO PHE GLN VAL SEQRES 11 A 596 PHE VAL GLY PHE ASP ASN GLY ASP PRO ALA SER SER GLY SEQRES 12 A 596 ASN LEU GLU ASN CYS HIS ILE TYR GLY HIS GLY VAL VAL SEQRES 13 A 596 ASP PHE GLY GLY TYR GLU PHE GLY ALA SER SER GLN LEU SEQRES 14 A 596 ARG ASN GLY VAL ALA PHE GLY ARG SER TYR ASN CYS SER SEQRES 15 A 596 VAL THR GLY ILE THR PHE GLN ASN GLY ASP VAL THR TRP SEQRES 16 A 596 ALA ILE THR LEU GLY TRP ASN GLY TYR GLY SER ASN CYS SEQRES 17 A 596 TYR VAL ARG LYS CYS ARG PHE ILE ASN LEU VAL ASN SER SEQRES 18 A 596 SER VAL ASN ALA ASN HIS SER THR VAL TYR VAL ASN CYS SEQRES 19 A 596 PRO TYR SER GLY VAL GLU SER CYS TYR PHE SER MET SER SEQRES 20 A 596 SER SER PHE ALA ARG ASN ILE ALA CYS SER VAL GLU LEU SEQRES 21 A 596 HIS GLN HIS ASP THR PHE TYR ARG GLY SER THR VAL ASN SEQRES 22 A 596 GLY TYR CYS ARG GLY ALA TYR VAL VAL MET HIS ALA ALA SEQRES 23 A 596 GLU ALA ALA GLY ALA GLY SER TYR ALA TYR ASN MET GLN SEQRES 24 A 596 VAL GLU ASN ASN ILE ALA VAL ILE TYR GLY GLN PHE VAL SEQRES 25 A 596 ILE LEU GLY SER ASP VAL THR ALA THR VAL SER GLY HIS SEQRES 26 A 596 LEU ASN ASP VAL ILE VAL SER GLY ASN ILE VAL SER ILE SEQRES 27 A 596 GLY GLU ARG ALA ALA PHE SER ALA PRO PHE GLY ALA PHE SEQRES 28 A 596 ILE ASP ILE GLY PRO ASP ASN SER GLY ALA SER ASN VAL SEQRES 29 A 596 GLN ASP ILE GLN ARG VAL LEU VAL THR GLY ASN SER PHE SEQRES 30 A 596 TYR ALA PRO ALA ASN ILE THR ASP SER ALA ALA ILE THR SEQRES 31 A 596 LEU ARG ALA ASN LEU ASN GLY CYS THR PHE ILE ALA ASN SEQRES 32 A 596 ASN PHE ASP CYS ARG TYR MET VAL TYR ASN ALA PRO GLY SEQRES 33 A 596 THR THR SER PRO VAL VAL GLN ASN LEU VAL TRP ASP LYS SEQRES 34 A 596 SER ASN VAL ILE GLY GLY THR HIS ALA ASN GLN ARG ALA SEQRES 35 A 596 GLY GLN ASN LEU PHE ASP MET GLN PHE ALA SER VAL VAL SEQRES 36 A 596 ASN SER THR ILE GLU VAL GLN LEU SER CYS GLU ASP LEU SEQRES 37 A 596 SER MET PHE SER CYS ILE LEU PHE PRO ALA SER CYS GLN SEQRES 38 A 596 LEU SER TYR SER LYS ILE THR VAL ASP SER ALA TRP THR SEQRES 39 A 596 LYS SER MET SER ASN THR ALA VAL PHE GLU GLY ASN GLN SEQRES 40 A 596 GLN ALA GLY ALA ASN VAL TYR VAL SER TYR PRO ALA THR SEQRES 41 A 596 VAL ASN LEU THR SER TYR ASN THR GLN GLY ALA VAL PRO SEQRES 42 A 596 PHE PHE SER THR ASP THR ASN TYR ALA TRP VAL THR SER SEQRES 43 A 596 ALA TYR SER LEU SER ILE ASN GLU ASN LEU ASP PHE SER SEQRES 44 A 596 PRO PRO ALA THR TYR THR ASN LYS ALA ASN GLY GLN LEU SEQRES 45 A 596 VAL GLY VAL GLY TYR ASN GLU ILE GLY GLY VAL ARG SER SEQRES 46 A 596 VAL SER VAL ARG LEU MET LEU GLN ARG GLN VAL HET TRS A 801 8 HET FMT A 802 3 HET FMT A 803 3 HET FMT A 804 3 HET NA A 805 1 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETSYN TRS TRIS BUFFER FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 FMT 3(C H2 O2) FORMUL 6 NA NA 1+ FORMUL 7 HOH *262(H2 O) HELIX 1 AA1 PHE A 114 SER A 120 1 7 HELIX 2 AA2 GLY A 123 HIS A 126 5 4 HELIX 3 AA3 ARG A 132 ASN A 134 5 3 HELIX 4 AA4 VAL A 142 ASP A 147 1 6 HELIX 5 AA5 SER A 151 PHE A 155 5 5 HELIX 6 AA6 SER A 172 GLY A 187 1 16 HELIX 7 AA7 VAL A 206 HIS A 212 5 7 HELIX 8 AA8 PRO A 234 ASP A 237 5 4 HELIX 9 AA9 ASP A 251 SER A 255 5 5 HELIX 10 AB1 PHE A 363 ILE A 367 1 5 HELIX 11 AB2 HIS A 397 ALA A 401 5 5 HELIX 12 AB3 ASN A 619 GLY A 623 5 5 SHEET 1 A 2 GLY A 128 GLN A 130 0 SHEET 2 A 2 MET A 139 MET A 141 -1 SHEET 1 B 2 GLY A 189 ILE A 193 0 SHEET 2 B 2 VAL A 222 ILE A 226 1 SHEET 1 C11 THR A 198 LEU A 201 0 SHEET 2 C11 ARG A 229 LEU A 232 1 SHEET 3 C11 VAL A 268 ASP A 270 1 SHEET 4 C11 THR A 300 GLN A 302 1 SHEET 5 C11 ARG A 327 ILE A 329 1 SHEET 6 C11 TYR A 356 SER A 358 1 SHEET 7 C11 THR A 384 TYR A 388 1 SHEET 8 C11 ILE A 417 ILE A 420 1 SHEET 9 C11 ILE A 448 ILE A 451 1 SHEET 10 C11 SER A 489 ALA A 492 1 SHEET 11 C11 ASN A 517 ASP A 519 1 SHEET 1 D10 CYS A 261 TYR A 264 0 SHEET 2 D10 CYS A 294 THR A 297 1 SHEET 3 D10 TYR A 322 ARG A 324 1 SHEET 4 D10 SER A 350 GLU A 353 1 SHEET 5 D10 THR A 378 ARG A 381 1 SHEET 6 D10 MET A 411 GLU A 414 1 SHEET 7 D10 VAL A 442 SER A 445 1 SHEET 8 D10 VAL A 483 THR A 486 1 SHEET 9 D10 CYS A 511 ILE A 514 1 SHEET 10 D10 LEU A 538 TRP A 540 1 SHEET 1 E 7 ILE A 310 LEU A 312 0 SHEET 2 E 7 VAL A 343 VAL A 345 1 SHEET 3 E 7 VAL A 371 LEU A 373 1 SHEET 4 E 7 ALA A 392 MET A 396 1 SHEET 5 E 7 VAL A 425 SER A 429 1 SHEET 6 E 7 ILE A 465 ILE A 467 1 SHEET 7 E 7 ILE A 502 LEU A 504 1 SHEET 1 F 2 TYR A 407 TYR A 409 0 SHEET 2 F 2 HIS A 438 ASN A 440 1 SHEET 1 G 3 VAL A 534 GLN A 536 0 SHEET 2 G 3 SER A 566 VAL A 568 1 SHEET 3 G 3 GLN A 594 SER A 596 1 SHEET 1 H 3 PHE A 560 MET A 562 0 SHEET 2 H 3 ILE A 587 PHE A 589 1 SHEET 3 H 3 ALA A 614 PHE A 616 1 SHEET 1 I 5 THR A 571 VAL A 574 0 SHEET 2 I 5 SER A 598 VAL A 602 1 SHEET 3 I 5 VAL A 626 THR A 637 1 SHEET 4 I 5 SER A 698 ARG A 707 -1 SHEET 5 I 5 SER A 659 SER A 662 -1 SHEET 1 J 3 LEU A 636 SER A 638 0 SHEET 2 J 3 GLY A 643 SER A 649 -1 SHEET 3 J 3 VAL A 686 ASN A 691 -1 LINK O ALA A 565 NA NA A 805 1555 1555 2.87 LINK O SER A 592 NA NA A 805 1555 1555 2.71 LINK OE1 GLN A 594 NA NA A 805 1555 1555 2.40 LINK NA NA A 805 O HOH A1123 1555 1555 2.22 SITE 1 AC1 9 VAL A 568 ASN A 569 TYR A 597 ASP A 670 SITE 2 AC1 9 ILE A 693 ARG A 697 HOH A 901 HOH A 928 SITE 3 AC1 9 HOH A 958 SITE 1 AC2 5 TYR A 597 ASN A 625 ASN A 668 LEU A 669 SITE 2 AC2 5 ASP A 670 SITE 1 AC3 3 ARG A 140 ASP A 144 VAL A 163 SITE 1 AC4 6 LEU A 669 PHE A 671 SER A 672 LYS A 680 SITE 2 AC4 6 TYR A 690 HOH A 934 SITE 1 AC5 4 ALA A 565 SER A 592 GLN A 594 HOH A1123 CRYST1 73.917 73.917 174.502 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013529 0.007811 0.000000 0.00000 SCALE2 0.000000 0.015622 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005731 0.00000