HEADER VIRAL PROTEIN 13-JAN-15 4XL9 TITLE TAILSPIKE PROTEIN MUTANT D339A OF E. COLI BACTERIOPHAGE HK620 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL SPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 114-710; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA PHAGE HK620; SOURCE 3 ORGANISM_COMMON: HEAD BINDING DOMAIN; SOURCE 4 ORGANISM_TAXID: 155148; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS BETA HELIX, PROTEIN-CARBOHYDRATE COMPLEX, PECTIN LYASE FOLD, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.GOHLKE,N.K.BROEKER,U.HEINEMANN,R.SECKLER,S.BARBIRZ REVDAT 3 10-JAN-24 4XL9 1 REMARK REVDAT 2 06-SEP-17 4XL9 1 REMARK LINK SITE ATOM REVDAT 1 20-JAN-16 4XL9 0 JRNL AUTH U.GOHLKE,N.K.BROEKER,S.KUNSTMANN,M.SANTER,U.HEINEMANN, JRNL AUTH 2 R.LIPOWSKI,R.SECKLER,S.BARBIRZ JRNL TITL ENTHALPIC COST OF WATER REMOVAL FROM A HYDROPHOBIC GLUCOSE JRNL TITL 2 BINDING CAVITY ON HK620 TAILSPIKE PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.K.BROEKER,U.GOHLKE,J.J.MUELLER,C.UETRECHT,U.HEINEMANN, REMARK 1 AUTH 2 R.SECKLER,S.BARBIRZ REMARK 1 TITL SINGLE AMINO ACID EXCHANGE IN BACTERIOPHAGE HK620 TAILSPIKE REMARK 1 TITL 2 PROTEIN RESULTS IN THOUSAND-FOLD INCREASE OF ITS REMARK 1 TITL 3 OLIGOSACCHARIDE AFFINITY. REMARK 1 REF GLYCOBIOLOGY V. 23 59 2013 REMARK 1 REFN ISSN 0959-6658 REMARK 1 PMID 22923442 REMARK 1 DOI 10.1093/GLYCOB/CWS126 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 35142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1751 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1942 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4529 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 441 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : -2.23000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.360 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4665 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4182 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6359 ; 1.252 ; 1.916 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9551 ; 0.722 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 6.946 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;36.766 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 661 ;12.449 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.443 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 695 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5587 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1202 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2398 ; 0.597 ; 1.736 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2399 ; 0.597 ; 1.737 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2998 ; 0.998 ; 2.603 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3245 18.4129 -10.5768 REMARK 3 T TENSOR REMARK 3 T11: 0.1467 T22: 0.1561 REMARK 3 T33: 0.0249 T12: -0.0050 REMARK 3 T13: -0.0206 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.8046 L22: 6.5131 REMARK 3 L33: 2.5167 L12: 1.8768 REMARK 3 L13: -1.0272 L23: -2.3828 REMARK 3 S TENSOR REMARK 3 S11: -0.1301 S12: 0.2808 S13: 0.0763 REMARK 3 S21: -0.5325 S22: 0.0354 S23: -0.0097 REMARK 3 S31: 0.1785 S32: -0.0548 S33: 0.0947 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8481 40.2207 9.8541 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.0864 REMARK 3 T33: 0.0602 T12: 0.0136 REMARK 3 T13: -0.0514 T23: 0.0513 REMARK 3 L TENSOR REMARK 3 L11: 0.4803 L22: 0.2696 REMARK 3 L33: 1.7852 L12: -0.0564 REMARK 3 L13: 0.3244 L23: 0.3765 REMARK 3 S TENSOR REMARK 3 S11: -0.0770 S12: 0.0965 S13: 0.0836 REMARK 3 S21: -0.0718 S22: -0.0985 S23: -0.0085 REMARK 3 S31: -0.3596 S32: -0.0226 S33: 0.1755 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 253 A 453 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5963 38.8092 33.8488 REMARK 3 T TENSOR REMARK 3 T11: 0.0974 T22: 0.0463 REMARK 3 T33: 0.0749 T12: 0.0059 REMARK 3 T13: -0.0398 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.5387 L22: 0.4600 REMARK 3 L33: 1.3619 L12: 0.0067 REMARK 3 L13: 0.0537 L23: -0.0227 REMARK 3 S TENSOR REMARK 3 S11: -0.0499 S12: 0.0341 S13: 0.0973 REMARK 3 S21: -0.0751 S22: -0.0526 S23: 0.0442 REMARK 3 S31: -0.1968 S32: -0.0336 S33: 0.1025 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 454 A 542 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5692 40.1704 54.9898 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.0606 REMARK 3 T33: 0.1155 T12: 0.0116 REMARK 3 T13: -0.0111 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.4260 L22: 0.4692 REMARK 3 L33: 1.2303 L12: 0.3372 REMARK 3 L13: -0.2960 L23: 0.0614 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: 0.0748 S13: 0.1651 REMARK 3 S21: -0.0378 S22: -0.0159 S23: 0.0557 REMARK 3 S31: -0.1489 S32: 0.0082 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 543 A 709 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2589 34.1513 80.7041 REMARK 3 T TENSOR REMARK 3 T11: 0.0377 T22: 0.0539 REMARK 3 T33: 0.1286 T12: -0.0051 REMARK 3 T13: 0.0003 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.0383 L22: 0.1612 REMARK 3 L33: 0.4547 L12: 0.0297 REMARK 3 L13: 0.0623 L23: -0.0985 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.0141 S13: 0.0271 REMARK 3 S21: 0.0201 S22: -0.0058 S23: -0.0299 REMARK 3 S31: -0.0619 S32: 0.0353 S33: 0.0161 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4XL9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35142 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 42.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4XM3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 3.5 M SODIUMFORMIATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y+1,X-Y,Z AND -X+ REMARK 300 Y+1,-X+1,Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 73.49500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 36.74750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 63.64854 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1331 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1333 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1336 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1068 O HOH A 1163 1.44 REMARK 500 O HOH A 1255 O HOH A 1284 2.02 REMARK 500 O HOH A 1148 O HOH A 1208 2.06 REMARK 500 O HOH A 905 O HOH A 948 2.08 REMARK 500 O HOH A 1069 O HOH A 1251 2.08 REMARK 500 O HOH A 1171 O HOH A 1204 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 999 O HOH A 1070 2655 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 221 -0.27 60.53 REMARK 500 ASN A 303 66.07 63.41 REMARK 500 ASN A 315 52.89 34.30 REMARK 500 ALA A 339 144.77 -177.40 REMARK 500 ASP A 441 68.04 60.86 REMARK 500 ASP A 470 -177.45 -68.58 REMARK 500 THR A 530 -117.78 -68.08 REMARK 500 THR A 613 -71.21 -109.15 REMARK 500 THR A 678 -166.50 -120.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1331 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1332 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A1333 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1334 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A1335 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A1336 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1337 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A1338 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A1339 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH A1340 DISTANCE = 8.01 ANGSTROMS REMARK 525 HOH A1341 DISTANCE = 8.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 803 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 565 O REMARK 620 2 SER A 592 O 79.9 REMARK 620 3 GLN A 594 OE1 81.6 91.8 REMARK 620 4 HOH A1200 O 93.7 79.7 170.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 803 DBREF 4XL9 A 113 709 UNP Q9AYY6 Q9AYY6_BPHK6 114 710 SEQADV 4XL9 ALA A 339 UNP Q9AYY6 ASP 340 ENGINEERED MUTATION SEQRES 1 A 597 GLN PHE ARG ALA ILE ILE GLU SER PRO GLU GLY ALA GLY SEQRES 2 A 597 HIS VAL GLY TYR GLN TYR ARG ARG ASN THR GLY SER THR SEQRES 3 A 597 MET ARG MET VAL SER ASP VAL LEU ASP GLU ARG VAL SER SEQRES 4 A 597 LEU TRP ASP PHE HIS CYS ASP PRO SER GLY ASN VAL ILE SEQRES 5 A 597 GLN PRO GLY PRO ASN VAL ASP SER ARG GLN TYR LEU GLN SEQRES 6 A 597 ALA ALA ILE ASP TYR VAL SER SER ASN GLY GLY GLY THR SEQRES 7 A 597 ILE THR ILE PRO ALA GLY TYR THR TRP TYR LEU GLY SER SEQRES 8 A 597 TYR GLY VAL GLY GLY ILE ALA GLY HIS SER GLY ILE ILE SEQRES 9 A 597 GLN LEU ARG SER ASN VAL ASN LEU ASN ILE GLU GLY ARG SEQRES 10 A 597 ILE HIS LEU SER PRO PHE PHE ASP LEU LYS PRO PHE GLN SEQRES 11 A 597 VAL PHE VAL GLY PHE ASP ASN GLY ASP PRO ALA SER SER SEQRES 12 A 597 GLY ASN LEU GLU ASN CYS HIS ILE TYR GLY HIS GLY VAL SEQRES 13 A 597 VAL ASP PHE GLY GLY TYR GLU PHE GLY ALA SER SER GLN SEQRES 14 A 597 LEU ARG ASN GLY VAL ALA PHE GLY ARG SER TYR ASN CYS SEQRES 15 A 597 SER VAL THR GLY ILE THR PHE GLN ASN GLY ASP VAL THR SEQRES 16 A 597 TRP ALA ILE THR LEU GLY TRP ASN GLY TYR GLY SER ASN SEQRES 17 A 597 CYS TYR VAL ARG LYS CYS ARG PHE ILE ASN LEU VAL ASN SEQRES 18 A 597 SER SER VAL ASN ALA ALA HIS SER THR VAL TYR VAL ASN SEQRES 19 A 597 CYS PRO TYR SER GLY VAL GLU SER CYS TYR PHE SER MET SEQRES 20 A 597 SER SER SER PHE ALA ARG ASN ILE ALA CYS SER VAL GLU SEQRES 21 A 597 LEU HIS GLN HIS ASP THR PHE TYR ARG GLY SER THR VAL SEQRES 22 A 597 ASN GLY TYR CYS ARG GLY ALA TYR VAL VAL MET HIS ALA SEQRES 23 A 597 ALA GLU ALA ALA GLY ALA GLY SER TYR ALA TYR ASN MET SEQRES 24 A 597 GLN VAL GLU ASN ASN ILE ALA VAL ILE TYR GLY GLN PHE SEQRES 25 A 597 VAL ILE LEU GLY SER ASP VAL THR ALA THR VAL SER GLY SEQRES 26 A 597 HIS LEU ASN ASP VAL ILE VAL SER GLY ASN ILE VAL SER SEQRES 27 A 597 ILE GLY GLU ARG ALA ALA PHE SER ALA PRO PHE GLY ALA SEQRES 28 A 597 PHE ILE ASP ILE GLY PRO ASP ASN SER GLY ALA SER ASN SEQRES 29 A 597 VAL GLN ASP ILE GLN ARG VAL LEU VAL THR GLY ASN SER SEQRES 30 A 597 PHE TYR ALA PRO ALA ASN ILE THR ASP SER ALA ALA ILE SEQRES 31 A 597 THR LEU ARG ALA ASN LEU ASN GLY CYS THR PHE ILE ALA SEQRES 32 A 597 ASN ASN PHE ASP CYS ARG TYR MET VAL TYR ASN ALA PRO SEQRES 33 A 597 GLY THR THR SER PRO VAL VAL GLN ASN LEU VAL TRP ASP SEQRES 34 A 597 LYS SER ASN VAL ILE GLY GLY THR HIS ALA ASN GLN ARG SEQRES 35 A 597 ALA GLY GLN ASN LEU PHE ASP MET GLN PHE ALA SER VAL SEQRES 36 A 597 VAL ASN SER THR ILE GLU VAL GLN LEU SER CYS GLU ASP SEQRES 37 A 597 LEU SER MET PHE SER CYS ILE LEU PHE PRO ALA SER CYS SEQRES 38 A 597 GLN LEU SER TYR SER LYS ILE THR VAL ASP SER ALA TRP SEQRES 39 A 597 THR LYS SER MET SER ASN THR ALA VAL PHE GLU GLY ASN SEQRES 40 A 597 GLN GLN ALA GLY ALA ASN VAL TYR VAL SER TYR PRO ALA SEQRES 41 A 597 THR VAL ASN LEU THR SER TYR ASN THR GLN GLY ALA VAL SEQRES 42 A 597 PRO PHE PHE SER THR ASP THR ASN TYR ALA TRP VAL THR SEQRES 43 A 597 SER ALA TYR SER LEU SER ILE ASN GLU ASN LEU ASP PHE SEQRES 44 A 597 SER PRO PRO ALA THR TYR THR ASN LYS ALA ASN GLY GLN SEQRES 45 A 597 LEU VAL GLY VAL GLY TYR ASN GLU ILE GLY GLY VAL ARG SEQRES 46 A 597 SER VAL SER VAL ARG LEU MET LEU GLN ARG GLN VAL HET TRS A 801 8 HET FMT A 802 3 HET NA A 803 1 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETSYN TRS TRIS BUFFER FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 FMT C H2 O2 FORMUL 4 NA NA 1+ FORMUL 5 HOH *441(H2 O) HELIX 1 AA1 GLN A 113 SER A 120 1 8 HELIX 2 AA2 GLU A 122 HIS A 126 5 5 HELIX 3 AA3 GLN A 130 ASN A 134 5 5 HELIX 4 AA4 VAL A 142 ASP A 147 1 6 HELIX 5 AA5 TRP A 153 PHE A 155 5 3 HELIX 6 AA6 SER A 172 ASN A 186 1 15 HELIX 7 AA7 VAL A 206 HIS A 212 5 7 HELIX 8 AA8 PRO A 234 ASP A 237 5 4 HELIX 9 AA9 ASP A 251 SER A 255 5 5 HELIX 10 AB1 PHE A 363 ILE A 367 1 5 HELIX 11 AB2 HIS A 397 ALA A 401 5 5 HELIX 12 AB3 ASN A 619 GLY A 623 5 5 SHEET 1 A 2 GLY A 128 GLN A 130 0 SHEET 2 A 2 MET A 139 MET A 141 -1 SHEET 1 B 2 GLY A 189 ILE A 193 0 SHEET 2 B 2 VAL A 222 ILE A 226 1 SHEET 1 C11 THR A 198 LEU A 201 0 SHEET 2 C11 ARG A 229 LEU A 232 1 SHEET 3 C11 VAL A 268 ASP A 270 1 SHEET 4 C11 THR A 300 GLN A 302 1 SHEET 5 C11 ARG A 327 ILE A 329 1 SHEET 6 C11 TYR A 356 SER A 358 1 SHEET 7 C11 THR A 384 TYR A 388 1 SHEET 8 C11 ILE A 417 ILE A 420 1 SHEET 9 C11 ILE A 448 ILE A 451 1 SHEET 10 C11 SER A 489 ALA A 492 1 SHEET 11 C11 ASN A 517 ASP A 519 1 SHEET 1 D10 CYS A 261 TYR A 264 0 SHEET 2 D10 CYS A 294 THR A 297 1 SHEET 3 D10 TYR A 322 ARG A 324 1 SHEET 4 D10 SER A 350 GLU A 353 1 SHEET 5 D10 THR A 378 ARG A 381 1 SHEET 6 D10 MET A 411 GLU A 414 1 SHEET 7 D10 VAL A 442 SER A 445 1 SHEET 8 D10 VAL A 483 THR A 486 1 SHEET 9 D10 CYS A 511 ILE A 514 1 SHEET 10 D10 LEU A 538 TRP A 540 1 SHEET 1 E 7 ILE A 310 LEU A 312 0 SHEET 2 E 7 VAL A 343 VAL A 345 1 SHEET 3 E 7 VAL A 371 LEU A 373 1 SHEET 4 E 7 ALA A 392 MET A 396 1 SHEET 5 E 7 VAL A 425 SER A 429 1 SHEET 6 E 7 ILE A 465 ILE A 467 1 SHEET 7 E 7 ILE A 502 LEU A 504 1 SHEET 1 F 3 VAL A 534 GLN A 536 0 SHEET 2 F 3 SER A 566 VAL A 568 1 SHEET 3 F 3 GLN A 594 SER A 596 1 SHEET 1 G 5 THR A 571 VAL A 574 0 SHEET 2 G 5 SER A 598 VAL A 602 1 SHEET 3 G 5 VAL A 626 THR A 637 1 SHEET 4 G 5 SER A 698 ARG A 707 -1 SHEET 5 G 5 SER A 659 SER A 662 -1 SHEET 1 H 2 ILE A 587 PHE A 589 0 SHEET 2 H 2 ALA A 614 PHE A 616 1 SHEET 1 I 4 LEU A 636 SER A 638 0 SHEET 2 I 4 GLY A 643 SER A 649 -1 SHEET 3 I 4 LEU A 685 ASN A 691 -1 SHEET 4 I 4 TYR A 677 ASN A 679 -1 LINK O ALA A 565 NA NA A 803 1555 1555 2.62 LINK O SER A 592 NA NA A 803 1555 1555 2.40 LINK OE1 GLN A 594 NA NA A 803 1555 1555 2.33 LINK NA NA A 803 O HOH A1200 1555 1555 2.37 SITE 1 AC1 9 VAL A 568 ASN A 569 TYR A 597 ASP A 670 SITE 2 AC1 9 ILE A 693 ARG A 697 HOH A1006 HOH A1125 SITE 3 AC1 9 HOH A1206 SITE 1 AC2 5 TYR A 597 ASN A 625 LEU A 669 ASP A 670 SITE 2 AC2 5 HOH A 955 SITE 1 AC3 4 ALA A 565 SER A 592 GLN A 594 HOH A1200 CRYST1 73.495 73.495 174.472 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013606 0.007856 0.000000 0.00000 SCALE2 0.000000 0.015711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005732 0.00000