HEADER VIRAL PROTEIN 13-JAN-15 4XLH TITLE TAILSPIKE PROTEIN DOUBLE MUTANT D339A/E372A OF E. COLI BACTERIOPHAGE TITLE 2 HK620 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL SPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAD BINDING, RESIDUES 112-710; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE HK620; SOURCE 3 ORGANISM_TAXID: 155148; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS BETA HELIX, PROTEIN-CARBOHYDRATE COMPLEX, PECTIN LYASE FOLD, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.GOHLKE,N.K.BROEKER,U.HEINEMANN,R.SECKLER,S.BARBIRZ REVDAT 3 10-JAN-24 4XLH 1 LINK REVDAT 2 06-SEP-17 4XLH 1 REMARK LINK SITE ATOM REVDAT 1 20-JAN-16 4XLH 0 JRNL AUTH U.GOHLKE,N.K.BROEKER,S.KUNSTMANN,M.SANTER,U.HEINEMANN, JRNL AUTH 2 R.LIPOWSKI,R.SECKLER,S.BARBIRZ JRNL TITL ENTHALPIC COST OF WATER REMOVAL FROM A HYDROPHOBIC GLUCOSE JRNL TITL 2 BINDING CAVITY ON HK620 TAILSPIKE PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.K.BROEKER,U.GOHLKE,J.J.MUELLER,C.UETRECHT,U.HEINEMANN, REMARK 1 AUTH 2 R.SECKLER,S.BARBIRZ REMARK 1 TITL SINGLE AMINO ACID EXCHANGE IN BACTERIOPHAGE HK620 TAILSPIKE REMARK 1 TITL 2 PROTEIN RESULTS IN THOUSAND-FOLD INCREASE OF ITS REMARK 1 TITL 3 OLIGOSACCHARIDE AFFINITY. REMARK 1 REF GLYCOBIOLOGY V. 23 59 2013 REMARK 1 REFN ISSN 0959-6658 REMARK 1 PMID 22923442 REMARK 1 DOI 10.1093/GLYCOB/CWS126 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3028 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4540 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 449 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -1.69000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.075 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4722 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4218 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6438 ; 1.674 ; 1.916 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9640 ; 0.853 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 7.235 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 225 ;36.441 ;24.311 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 665 ;12.259 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.834 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 702 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5689 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1220 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2431 ; 0.870 ; 1.326 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2432 ; 0.876 ; 1.327 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3048 ; 1.285 ; 1.987 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4322 19.4174 -10.7859 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.2283 REMARK 3 T33: 0.0270 T12: 0.0222 REMARK 3 T13: -0.0142 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.0078 L22: 9.1921 REMARK 3 L33: 2.5535 L12: 2.4523 REMARK 3 L13: -1.1060 L23: -3.1191 REMARK 3 S TENSOR REMARK 3 S11: -0.2152 S12: 0.4885 S13: 0.1304 REMARK 3 S21: -0.7703 S22: 0.0956 S23: 0.0374 REMARK 3 S31: 0.2581 S32: -0.1943 S33: 0.1196 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 464 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4794 40.0623 26.2975 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.0696 REMARK 3 T33: 0.0514 T12: 0.0234 REMARK 3 T13: -0.0514 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.2725 L22: 0.1990 REMARK 3 L33: 2.2168 L12: 0.0435 REMARK 3 L13: 0.1484 L23: 0.0234 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: 0.0977 S13: 0.0927 REMARK 3 S21: -0.1090 S22: -0.0565 S23: 0.0481 REMARK 3 S31: -0.3484 S32: -0.0718 S33: 0.1383 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 465 A 524 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3609 39.3092 53.7311 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0031 REMARK 3 T33: 0.0188 T12: 0.0134 REMARK 3 T13: -0.0199 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 2.5609 L22: 0.9711 REMARK 3 L33: 0.9319 L12: 0.3881 REMARK 3 L13: -0.1141 L23: 0.2148 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: -0.0002 S13: 0.1859 REMARK 3 S21: -0.0323 S22: -0.0213 S23: 0.0160 REMARK 3 S31: -0.2362 S32: -0.0533 S33: 0.0554 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 525 A 537 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8959 46.6724 60.2569 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.0238 REMARK 3 T33: 0.1021 T12: 0.0061 REMARK 3 T13: -0.0095 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 16.4253 L22: 8.9440 REMARK 3 L33: 6.6188 L12: 3.2248 REMARK 3 L13: -2.9744 L23: -2.3692 REMARK 3 S TENSOR REMARK 3 S11: 0.1919 S12: -0.3703 S13: 1.2479 REMARK 3 S21: 0.2729 S22: -0.1028 S23: 0.0876 REMARK 3 S31: -0.9989 S32: 0.0509 S33: -0.0891 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 538 A 709 REMARK 3 ORIGIN FOR THE GROUP (A): 40.3821 34.3079 80.0685 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.0499 REMARK 3 T33: 0.0699 T12: -0.0081 REMARK 3 T13: -0.0130 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.1603 L22: 0.0473 REMARK 3 L33: 0.9847 L12: 0.0021 REMARK 3 L13: 0.1635 L23: -0.1805 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.0717 S13: 0.0313 REMARK 3 S21: 0.0373 S22: -0.0249 S23: -0.0149 REMARK 3 S31: -0.1245 S32: 0.0419 S33: 0.0309 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4XLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 43.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4XM3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 3.5 M SODIUM FORMATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y+1,X-Y,Z AND -X+ REMARK 300 Y+1,-X+1,Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 73.97500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 36.98750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 64.06423 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1341 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 942 O HOH A 942 2655 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 505 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 505 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 303 65.03 65.35 REMARK 500 ASN A 333 -0.86 -144.21 REMARK 500 ASP A 441 71.31 64.43 REMARK 500 MET A 523 -64.29 -93.28 REMARK 500 THR A 530 -113.53 -80.64 REMARK 500 THR A 613 -67.29 -108.13 REMARK 500 THR A 678 -162.70 -122.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 807 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 565 O REMARK 620 2 SER A 592 O 83.0 REMARK 620 3 GLN A 594 OE1 80.9 84.5 REMARK 620 4 HOH A1274 O 106.0 83.5 165.3 REMARK 620 5 HOH A1297 O 96.1 176.6 98.6 93.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 807 DBREF 4XLH A 111 709 UNP Q9AYY6 Q9AYY6_BPHK6 112 710 SEQADV 4XLH ALA A 339 UNP Q9AYY6 ASP 340 ENGINEERED MUTATION SEQADV 4XLH ALA A 372 UNP Q9AYY6 GLU 373 ENGINEERED MUTATION SEQRES 1 A 599 PRO ASP GLN PHE ARG ALA ILE ILE GLU SER PRO GLU GLY SEQRES 2 A 599 ALA GLY HIS VAL GLY TYR GLN TYR ARG ARG ASN THR GLY SEQRES 3 A 599 SER THR MET ARG MET VAL SER ASP VAL LEU ASP GLU ARG SEQRES 4 A 599 VAL SER LEU TRP ASP PHE HIS CYS ASP PRO SER GLY ASN SEQRES 5 A 599 VAL ILE GLN PRO GLY PRO ASN VAL ASP SER ARG GLN TYR SEQRES 6 A 599 LEU GLN ALA ALA ILE ASP TYR VAL SER SER ASN GLY GLY SEQRES 7 A 599 GLY THR ILE THR ILE PRO ALA GLY TYR THR TRP TYR LEU SEQRES 8 A 599 GLY SER TYR GLY VAL GLY GLY ILE ALA GLY HIS SER GLY SEQRES 9 A 599 ILE ILE GLN LEU ARG SER ASN VAL ASN LEU ASN ILE GLU SEQRES 10 A 599 GLY ARG ILE HIS LEU SER PRO PHE PHE ASP LEU LYS PRO SEQRES 11 A 599 PHE GLN VAL PHE VAL GLY PHE ASP ASN GLY ASP PRO ALA SEQRES 12 A 599 SER SER GLY ASN LEU GLU ASN CYS HIS ILE TYR GLY HIS SEQRES 13 A 599 GLY VAL VAL ASP PHE GLY GLY TYR GLU PHE GLY ALA SER SEQRES 14 A 599 SER GLN LEU ARG ASN GLY VAL ALA PHE GLY ARG SER TYR SEQRES 15 A 599 ASN CYS SER VAL THR GLY ILE THR PHE GLN ASN GLY ASP SEQRES 16 A 599 VAL THR TRP ALA ILE THR LEU GLY TRP ASN GLY TYR GLY SEQRES 17 A 599 SER ASN CYS TYR VAL ARG LYS CYS ARG PHE ILE ASN LEU SEQRES 18 A 599 VAL ASN SER SER VAL ASN ALA ALA HIS SER THR VAL TYR SEQRES 19 A 599 VAL ASN CYS PRO TYR SER GLY VAL GLU SER CYS TYR PHE SEQRES 20 A 599 SER MET SER SER SER PHE ALA ARG ASN ILE ALA CYS SER SEQRES 21 A 599 VAL ALA LEU HIS GLN HIS ASP THR PHE TYR ARG GLY SER SEQRES 22 A 599 THR VAL ASN GLY TYR CYS ARG GLY ALA TYR VAL VAL MET SEQRES 23 A 599 HIS ALA ALA GLU ALA ALA GLY ALA GLY SER TYR ALA TYR SEQRES 24 A 599 ASN MET GLN VAL GLU ASN ASN ILE ALA VAL ILE TYR GLY SEQRES 25 A 599 GLN PHE VAL ILE LEU GLY SER ASP VAL THR ALA THR VAL SEQRES 26 A 599 SER GLY HIS LEU ASN ASP VAL ILE VAL SER GLY ASN ILE SEQRES 27 A 599 VAL SER ILE GLY GLU ARG ALA ALA PHE SER ALA PRO PHE SEQRES 28 A 599 GLY ALA PHE ILE ASP ILE GLY PRO ASP ASN SER GLY ALA SEQRES 29 A 599 SER ASN VAL GLN ASP ILE GLN ARG VAL LEU VAL THR GLY SEQRES 30 A 599 ASN SER PHE TYR ALA PRO ALA ASN ILE THR ASP SER ALA SEQRES 31 A 599 ALA ILE THR LEU ARG ALA ASN LEU ASN GLY CYS THR PHE SEQRES 32 A 599 ILE ALA ASN ASN PHE ASP CYS ARG TYR MET VAL TYR ASN SEQRES 33 A 599 ALA PRO GLY THR THR SER PRO VAL VAL GLN ASN LEU VAL SEQRES 34 A 599 TRP ASP LYS SER ASN VAL ILE GLY GLY THR HIS ALA ASN SEQRES 35 A 599 GLN ARG ALA GLY GLN ASN LEU PHE ASP MET GLN PHE ALA SEQRES 36 A 599 SER VAL VAL ASN SER THR ILE GLU VAL GLN LEU SER CYS SEQRES 37 A 599 GLU ASP LEU SER MET PHE SER CYS ILE LEU PHE PRO ALA SEQRES 38 A 599 SER CYS GLN LEU SER TYR SER LYS ILE THR VAL ASP SER SEQRES 39 A 599 ALA TRP THR LYS SER MET SER ASN THR ALA VAL PHE GLU SEQRES 40 A 599 GLY ASN GLN GLN ALA GLY ALA ASN VAL TYR VAL SER TYR SEQRES 41 A 599 PRO ALA THR VAL ASN LEU THR SER TYR ASN THR GLN GLY SEQRES 42 A 599 ALA VAL PRO PHE PHE SER THR ASP THR ASN TYR ALA TRP SEQRES 43 A 599 VAL THR SER ALA TYR SER LEU SER ILE ASN GLU ASN LEU SEQRES 44 A 599 ASP PHE SER PRO PRO ALA THR TYR THR ASN LYS ALA ASN SEQRES 45 A 599 GLY GLN LEU VAL GLY VAL GLY TYR ASN GLU ILE GLY GLY SEQRES 46 A 599 VAL ARG SER VAL SER VAL ARG LEU MET LEU GLN ARG GLN SEQRES 47 A 599 VAL HET TRS A 801 8 HET FMT A 802 3 HET FMT A 803 3 HET FMT A 804 3 HET FMT A 805 3 HET FMT A 806 3 HET NA A 807 1 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETSYN TRS TRIS BUFFER FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 FMT 5(C H2 O2) FORMUL 8 NA NA 1+ FORMUL 9 HOH *449(H2 O) HELIX 1 AA1 PRO A 111 SER A 120 1 10 HELIX 2 AA2 GLU A 122 HIS A 126 5 5 HELIX 3 AA3 GLN A 130 ASN A 134 5 5 HELIX 4 AA4 VAL A 142 ASP A 147 1 6 HELIX 5 AA5 TRP A 153 PHE A 155 5 3 HELIX 6 AA6 SER A 172 ASN A 186 1 15 HELIX 7 AA7 GLY A 207 HIS A 212 5 6 HELIX 8 AA8 PRO A 234 ASP A 237 5 4 HELIX 9 AA9 ASP A 251 SER A 255 5 5 HELIX 10 AB1 PHE A 363 ILE A 367 1 5 HELIX 11 AB2 HIS A 397 ALA A 401 5 5 HELIX 12 AB3 ASN A 619 GLY A 623 5 5 SHEET 1 A 2 GLY A 128 GLN A 130 0 SHEET 2 A 2 MET A 139 MET A 141 -1 SHEET 1 B 2 GLY A 189 ILE A 193 0 SHEET 2 B 2 VAL A 222 ILE A 226 1 SHEET 1 C11 THR A 198 LEU A 201 0 SHEET 2 C11 ARG A 229 LEU A 232 1 SHEET 3 C11 VAL A 268 ASP A 270 1 SHEET 4 C11 THR A 300 GLN A 302 1 SHEET 5 C11 ARG A 327 ILE A 329 1 SHEET 6 C11 TYR A 356 SER A 358 1 SHEET 7 C11 THR A 384 TYR A 388 1 SHEET 8 C11 ILE A 417 ILE A 420 1 SHEET 9 C11 ILE A 448 ILE A 451 1 SHEET 10 C11 SER A 489 ALA A 492 1 SHEET 11 C11 ASN A 517 ASP A 519 1 SHEET 1 D10 CYS A 261 TYR A 264 0 SHEET 2 D10 CYS A 294 THR A 297 1 SHEET 3 D10 CYS A 321 ARG A 324 1 SHEET 4 D10 SER A 350 GLU A 353 1 SHEET 5 D10 THR A 378 ARG A 381 1 SHEET 6 D10 MET A 411 GLU A 414 1 SHEET 7 D10 VAL A 442 SER A 445 1 SHEET 8 D10 VAL A 483 THR A 486 1 SHEET 9 D10 CYS A 511 ILE A 514 1 SHEET 10 D10 LEU A 538 TRP A 540 1 SHEET 1 E 7 ILE A 310 LEU A 312 0 SHEET 2 E 7 VAL A 343 VAL A 345 1 SHEET 3 E 7 VAL A 371 LEU A 373 1 SHEET 4 E 7 ALA A 392 MET A 396 1 SHEET 5 E 7 VAL A 425 SER A 429 1 SHEET 6 E 7 ILE A 465 ILE A 467 1 SHEET 7 E 7 ILE A 502 LEU A 504 1 SHEET 1 F 3 VAL A 534 GLN A 536 0 SHEET 2 F 3 SER A 566 VAL A 568 1 SHEET 3 F 3 GLN A 594 SER A 596 1 SHEET 1 G 5 THR A 571 VAL A 574 0 SHEET 2 G 5 SER A 598 VAL A 602 1 SHEET 3 G 5 VAL A 626 THR A 637 1 SHEET 4 G 5 SER A 698 ARG A 707 -1 SHEET 5 G 5 SER A 659 SER A 662 -1 SHEET 1 H 2 ILE A 587 PHE A 589 0 SHEET 2 H 2 ALA A 614 PHE A 616 1 SHEET 1 I 3 LEU A 636 SER A 638 0 SHEET 2 I 3 GLY A 643 SER A 649 -1 SHEET 3 I 3 VAL A 686 ASN A 691 -1 LINK O ALA A 565 NA NA A 807 1555 1555 2.57 LINK O SER A 592 NA NA A 807 1555 1555 2.44 LINK OE1 GLN A 594 NA NA A 807 1555 1555 2.24 LINK NA NA A 807 O HOH A1274 1555 1555 2.50 LINK NA NA A 807 O HOH A1297 1555 1555 2.51 SITE 1 AC1 11 VAL A 568 ASN A 569 TYR A 597 ASP A 670 SITE 2 AC1 11 ILE A 693 ARG A 697 HOH A 950 HOH A 979 SITE 3 AC1 11 HOH A 991 HOH A1028 HOH A1045 SITE 1 AC2 6 TYR A 597 ASN A 625 LEU A 669 ASP A 670 SITE 2 AC2 6 HOH A 901 HOH A 984 SITE 1 AC3 5 VAL A 634 ASN A 635 THR A 650 ASP A 651 SITE 2 AC3 5 TYR A 654 SITE 1 AC4 3 ARG A 140 ASP A 144 HOH A1038 SITE 1 AC5 6 ASP A 541 LYS A 542 ASN A 544 GLN A 575 SITE 2 AC5 6 HOH A 990 HOH A1133 SITE 1 AC6 7 GLY A 623 ALA A 624 GLU A 667 ALA A 681 SITE 2 AC6 7 HOH A1022 HOH A1210 HOH A1140 SITE 1 AC7 5 ALA A 565 SER A 592 GLN A 594 HOH A1274 SITE 2 AC7 5 HOH A1297 CRYST1 73.975 73.975 174.328 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013518 0.007805 0.000000 0.00000 SCALE2 0.000000 0.015609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005736 0.00000