HEADER HYDROLASE 15-JAN-15 4XNN TITLE CRYSTAL STRUCTURE OF A GH7 FAMILY CELLOBIOHYDROLASE FROM DAPHNIA PULEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLOBIOHYDROLASE CHBI; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-464; COMPND 5 SYNONYM: GH7 FAMILY PROTEIN; COMPND 6 EC: 3.2.1.91; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DAPHNIA PULEX; SOURCE 3 ORGANISM_COMMON: COMMON WATER FLEA; SOURCE 4 ORGANISM_TAXID: 6669; SOURCE 5 GENE: CEL7A, DAPPUDRAFT_347598; SOURCE 6 EXPRESSION_SYSTEM: TRICHODERMA REESEI QM6A; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 431241 KEYWDS CELLULOSE 1, 4-BETA-CELLOBIOSIDASE, FRESH WATER ARTHROPOD, CELLULASE, KEYWDS 2 CEL7, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.EBRAHIM,S.E.HOBDEY,K.PODKAMINER,L.E.TAYLOR II,G.T.BECKHAM, AUTHOR 2 S.R.DECKER,M.E.HIMMEL,S.M.CRAGG,J.E.MCGEEHAN REVDAT 5 10-JAN-24 4XNN 1 REMARK REVDAT 4 30-MAR-22 4XNN 1 SOURCE REMARK REVDAT 3 11-MAR-20 4XNN 1 SEQRES REVDAT 2 30-AUG-17 4XNN 1 REMARK SITE ATOM REVDAT 1 27-JAN-16 4XNN 0 JRNL AUTH S.E.HOBDEY,A.EBRAHIM,K.PODKAMINER,L.E.TAYLOR II,G.T.BECKHAM, JRNL AUTH 2 S.R.DECKER,M.E.HIMMEL,S.M.CRAGG,J.E.MCGEEHAN JRNL TITL CHARACTERIZATION OF A GH7 FAMILY CELLOBIOHYDROLASE FROM JRNL TITL 2 DAPHNIA PULEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 71506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 283 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6752 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 543 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.109 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6950 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6118 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9472 ; 1.876 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14144 ; 0.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 888 ; 6.718 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 318 ;33.811 ;25.094 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1028 ;15.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;23.484 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1012 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8116 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1606 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3558 ; 2.069 ; 2.399 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3557 ; 2.067 ; 2.398 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4444 ; 2.833 ; 3.586 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 464 REMARK 3 ORIGIN FOR THE GROUP (A): -30.8758 9.6883 24.0254 REMARK 3 T TENSOR REMARK 3 T11: 0.0472 T22: 0.0306 REMARK 3 T33: 0.0459 T12: 0.0077 REMARK 3 T13: 0.0137 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.2693 L22: 0.0760 REMARK 3 L33: 0.7027 L12: 0.0062 REMARK 3 L13: -0.0071 L23: -0.2039 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.0409 S13: 0.0165 REMARK 3 S21: -0.0146 S22: -0.0391 S23: -0.0015 REMARK 3 S31: -0.0045 S32: 0.0838 S33: 0.0376 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 464 REMARK 3 ORIGIN FOR THE GROUP (A): -58.0591 31.6790 58.4755 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0729 REMARK 3 T33: 0.0127 T12: -0.0112 REMARK 3 T13: 0.0174 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.2748 L22: 0.0985 REMARK 3 L33: 0.7494 L12: 0.1164 REMARK 3 L13: -0.0783 L23: -0.1209 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.0477 S13: -0.0042 REMARK 3 S21: -0.0234 S22: 0.0232 S23: -0.0141 REMARK 3 S31: -0.0076 S32: -0.0610 S33: -0.0329 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75459 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 43.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 1.760 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 2YG1 REMARK 200 REMARK 200 REMARK: THIN PLATE, 110 UM X 80 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 800MM AMMONIUM SULPHATE, 100MM SODIUM REMARK 280 CITRATE, 10MM SODIUM ACETATE, 50MM SODIUM CHLORIDE, PH 4.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.14500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.51000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.14500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.51000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 270 O HOH B 601 1.47 REMARK 500 CG ASN B 270 O HOH B 601 1.64 REMARK 500 O HOH A 696 O HOH A 839 1.67 REMARK 500 CB CYS A 364 O HOH A 835 1.75 REMARK 500 CB CYS B 364 O HOH B 789 1.92 REMARK 500 OD1 ASN A 420 O HOH A 601 1.96 REMARK 500 O HOH B 796 O HOH B 820 2.04 REMARK 500 O HOH A 636 O HOH A 824 2.05 REMARK 500 O HOH A 826 O HOH A 891 2.08 REMARK 500 O HOH B 787 O HOH B 829 2.17 REMARK 500 O HOH A 713 O HOH A 777 2.18 REMARK 500 O HOH A 621 O HOH A 839 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 142 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 142 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 LEU A 160 CB - CG - CD2 ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 261 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 306 CB - CG - CD2 ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG B 142 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 142 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ASP B 325 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP B 361 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 162 129.71 -30.55 REMARK 500 ASN A 293 38.45 84.47 REMARK 500 SER A 413 -153.26 -139.56 REMARK 500 ASN B 212 55.04 -90.59 REMARK 500 ASN B 243 -167.08 -126.67 REMARK 500 ASN B 339 44.30 38.59 REMARK 500 SER B 413 -157.57 -145.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 896 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 897 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 898 DISTANCE = 7.76 ANGSTROMS REMARK 525 HOH B 844 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 845 DISTANCE = 7.65 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 DBREF 4XNN A 20 464 UNP E9G5J5 E9G5J5_DAPPU 20 464 DBREF 4XNN B 20 464 UNP E9G5J5 E9G5J5_DAPPU 20 464 SEQRES 1 A 445 PCA ASN VAL GLY THR GLN ALA ALA GLU GLU PRO LEU ASN SEQRES 2 A 445 LEU PRO ILE SER VAL CYS THR ALA PRO GLY ASN CYS GLN SEQRES 3 A 445 THR GLU ALA ASP ALA VAL VAL LEU ASP SER ASN TRP ARG SEQRES 4 A 445 TRP ALA HIS THR THR THR GLY TYR THR ASN CYS TYR THR SEQRES 5 A 445 GLY ASN LEU TRP ASP THR THR LEU CYS PRO THR PRO GLU SEQRES 6 A 445 THR CYS THR THR ASN CYS ALA ILE ASP GLY VAL PRO LEU SEQRES 7 A 445 ALA ASP TRP SER GLY THR TYR GLY GLY SER VAL THR GLY SEQRES 8 A 445 ASN LYS PHE ASN LEU LYS PHE VAL THR VAL GLY PRO TYR SEQRES 9 A 445 SER THR ASN ILE GLY ALA ARG THR PHE LEU LEU ASP SER SEQRES 10 A 445 THR LYS THR ARG TYR ARG MET PHE GLN LEU LEU ASN ARG SEQRES 11 A 445 GLU PHE THR TYR ASP VAL ASP VAL SER SER LEU ASP CYS SEQRES 12 A 445 GLY LEU ASN GLY ALA LEU TYR PHE VAL SER MET ASP ALA SEQRES 13 A 445 ASP GLY GLY ALA ALA LYS TYR PRO THR ASN LYS GLY GLY SEQRES 14 A 445 ALA LYS TYR GLY THR GLY TYR CYS ASP ALA GLN CYS PRO SEQRES 15 A 445 HIS ASP VAL LYS TRP ILE ASN GLY LEU ALA ASN SER LYS SEQRES 16 A 445 ASP TRP THR PRO ILE PRO GLY ASP ALA ASN SER GLY LYS SEQRES 17 A 445 GLY TYR TYR GLY ASN CYS CYS ALA GLU LEU ASP ILE TRP SEQRES 18 A 445 GLU ALA ASN LYS GLN SER GLN ALA PHE THR THR HIS PRO SEQRES 19 A 445 CYS THR PRO ASN ASP GLN THR ARG CYS GLU GLY VAL VAL SEQRES 20 A 445 CYS GLY ASP ASN ASP SER GLY ASP ARG TYR ASN GLY MET SEQRES 21 A 445 CYS ASP LYS ASP GLY CYS ASP PHE ALA SER TYR ARG MET SEQRES 22 A 445 ASN ASP HIS THR PHE TYR GLY PRO GLY SER THR PHE LYS SEQRES 23 A 445 LEU ASP SER THR LYS PRO PHE THR VAL VAL SER GLN PHE SEQRES 24 A 445 ILE THR THR ASP GLY THR ASP ASN GLY ASP PHE LYS GLU SEQRES 25 A 445 PHE ARG ARG PHE TYR VAL GLN ASN GLY VAL ARG ILE GLU SEQRES 26 A 445 ASN SER LYS VAL ASN PHE PRO GLY ILE THR ALA TYR ASP SEQRES 27 A 445 SER ILE THR ASP GLU MET CYS ALA ALA THR LYS GLY LEU SEQRES 28 A 445 PHE GLY ASP LEU ASP ASP HIS LYS ASN LYS GLY GLY MET SEQRES 29 A 445 LYS GLN MET GLY GLU ALA MET ARG LYS GLY MET ALA LEU SEQRES 30 A 445 VAL MET SER ILE TRP ASP ASP HIS ASP VAL ASN MET LEU SEQRES 31 A 445 TRP LEU ASP SER ASN TYR PRO PRO THR GLY ASN PRO SER SEQRES 32 A 445 THR PRO GLY VAL ALA ARG GLY PRO CYS PRO THR THR SER SEQRES 33 A 445 GLY VAL PRO SER GLU VAL GLU VAL THR GLN ALA ASN ALA SEQRES 34 A 445 VAL VAL SER PHE GLY ASN ILE LYS PHE GLY PRO ILE GLY SEQRES 35 A 445 SER THR VAL SEQRES 1 B 445 PCA ASN VAL GLY THR GLN ALA ALA GLU GLU PRO LEU ASN SEQRES 2 B 445 LEU PRO ILE SER VAL CYS THR ALA PRO GLY ASN CYS GLN SEQRES 3 B 445 THR GLU ALA ASP ALA VAL VAL LEU ASP SER ASN TRP ARG SEQRES 4 B 445 TRP ALA HIS THR THR THR GLY TYR THR ASN CYS TYR THR SEQRES 5 B 445 GLY ASN LEU TRP ASP THR THR LEU CYS PRO THR PRO GLU SEQRES 6 B 445 THR CYS THR THR ASN CYS ALA ILE ASP GLY VAL PRO LEU SEQRES 7 B 445 ALA ASP TRP SER GLY THR TYR GLY GLY SER VAL THR GLY SEQRES 8 B 445 ASN LYS PHE ASN LEU LYS PHE VAL THR VAL GLY PRO TYR SEQRES 9 B 445 SER THR ASN ILE GLY ALA ARG THR PHE LEU LEU ASP SER SEQRES 10 B 445 THR LYS THR ARG TYR ARG MET PHE GLN LEU LEU ASN ARG SEQRES 11 B 445 GLU PHE THR TYR ASP VAL ASP VAL SER SER LEU ASP CYS SEQRES 12 B 445 GLY LEU ASN GLY ALA LEU TYR PHE VAL SER MET ASP ALA SEQRES 13 B 445 ASP GLY GLY ALA ALA LYS TYR PRO THR ASN LYS GLY GLY SEQRES 14 B 445 ALA LYS TYR GLY THR GLY TYR CYS ASP ALA GLN CYS PRO SEQRES 15 B 445 HIS ASP VAL LYS TRP ILE ASN GLY LEU ALA ASN SER LYS SEQRES 16 B 445 ASP TRP THR PRO ILE PRO GLY ASP ALA ASN SER GLY LYS SEQRES 17 B 445 GLY TYR TYR GLY ASN CYS CYS ALA GLU LEU ASP ILE TRP SEQRES 18 B 445 GLU ALA ASN LYS GLN SER GLN ALA PHE THR THR HIS PRO SEQRES 19 B 445 CYS THR PRO ASN ASP GLN THR ARG CYS GLU GLY VAL VAL SEQRES 20 B 445 CYS GLY ASP ASN ASP SER GLY ASP ARG TYR ASN GLY MET SEQRES 21 B 445 CYS ASP LYS ASP GLY CYS ASP PHE ALA SER TYR ARG MET SEQRES 22 B 445 ASN ASP HIS THR PHE TYR GLY PRO GLY SER THR PHE LYS SEQRES 23 B 445 LEU ASP SER THR LYS PRO PHE THR VAL VAL SER GLN PHE SEQRES 24 B 445 ILE THR THR ASP GLY THR ASP ASN GLY ASP PHE LYS GLU SEQRES 25 B 445 PHE ARG ARG PHE TYR VAL GLN ASN GLY VAL ARG ILE GLU SEQRES 26 B 445 ASN SER LYS VAL ASN PHE PRO GLY ILE THR ALA TYR ASP SEQRES 27 B 445 SER ILE THR ASP GLU MET CYS ALA ALA THR LYS GLY LEU SEQRES 28 B 445 PHE GLY ASP LEU ASP ASP HIS LYS ASN LYS GLY GLY MET SEQRES 29 B 445 LYS GLN MET GLY GLU ALA MET ARG LYS GLY MET ALA LEU SEQRES 30 B 445 VAL MET SER ILE TRP ASP ASP HIS ASP VAL ASN MET LEU SEQRES 31 B 445 TRP LEU ASP SER ASN TYR PRO PRO THR GLY ASN PRO SER SEQRES 32 B 445 THR PRO GLY VAL ALA ARG GLY PRO CYS PRO THR THR SER SEQRES 33 B 445 GLY VAL PRO SER GLU VAL GLU VAL THR GLN ALA ASN ALA SEQRES 34 B 445 VAL VAL SER PHE GLY ASN ILE LYS PHE GLY PRO ILE GLY SEQRES 35 B 445 SER THR VAL MODRES 4XNN PCA A 20 GLN MODIFIED RESIDUE MODRES 4XNN PCA B 20 GLN MODIFIED RESIDUE HET PCA A 20 8 HET PCA B 20 8 HET GOL A 501 6 HET GOL B 501 6 HETNAM PCA PYROGLUTAMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *543(H2 O) HELIX 1 AA1 SER A 55 ARG A 58 5 4 HELIX 2 AA2 THR A 82 ASN A 89 1 8 HELIX 3 AA3 PRO A 96 THR A 103 1 8 HELIX 4 AA4 GLY A 187 GLY A 192 5 6 HELIX 5 AA5 GLU A 263 GLY A 268 5 6 HELIX 6 AA6 ASP A 269 GLY A 273 5 5 HELIX 7 AA7 THR A 360 GLY A 372 1 13 HELIX 8 AA8 ASP A 375 LYS A 380 1 6 HELIX 9 AA9 GLY A 381 GLY A 393 1 13 HELIX 10 AB1 MET A 408 SER A 413 1 6 HELIX 11 AB2 VAL A 437 GLN A 445 1 9 HELIX 12 AB3 SER B 55 ARG B 58 5 4 HELIX 13 AB4 THR B 82 ASN B 89 1 8 HELIX 14 AB5 PRO B 96 THR B 103 1 8 HELIX 15 AB6 GLY B 187 GLY B 192 5 6 HELIX 16 AB7 GLU B 263 GLY B 268 5 6 HELIX 17 AB8 THR B 360 GLY B 372 1 13 HELIX 18 AB9 ASP B 375 LYS B 380 1 6 HELIX 19 AC1 GLY B 381 GLY B 393 1 13 HELIX 20 AC2 MET B 408 SER B 413 1 6 HELIX 21 AC3 VAL B 437 GLN B 445 1 9 SHEET 1 AA1 3 ASN A 21 VAL A 22 0 SHEET 2 AA1 3 CYS A 90 ILE A 92 1 O ILE A 92 N ASN A 21 SHEET 3 AA1 3 ALA A 60 THR A 62 -1 N HIS A 61 O ALA A 91 SHEET 1 AA211 GLY A 106 THR A 109 0 SHEET 2 AA211 LYS A 112 LYS A 116 -1 O ASN A 114 N SER A 107 SHEET 3 AA211 VAL A 449 PRO A 459 -1 O PHE A 452 N PHE A 113 SHEET 4 AA211 LEU A 31 ALA A 40 1 N CYS A 38 O PHE A 457 SHEET 5 AA211 ASN A 43 LEU A 53 -1 O GLU A 47 N ILE A 35 SHEET 6 AA211 ALA A 129 LEU A 134 -1 O LEU A 134 N ALA A 50 SHEET 7 AA211 ALA A 395 ASP A 402 -1 O MET A 398 N THR A 131 SHEET 8 AA211 LEU A 164 VAL A 171 -1 N TYR A 169 O VAL A 397 SHEET 9 AA211 GLU A 236 ALA A 242 -1 O LEU A 237 N PHE A 170 SHEET 10 AA211 GLN A 247 HIS A 252 -1 O THR A 250 N ASP A 238 SHEET 11 AA211 CYS A 285 ALA A 288 -1 O PHE A 287 N PHE A 249 SHEET 1 AA3 7 GLY A 106 THR A 109 0 SHEET 2 AA3 7 LYS A 112 LYS A 116 -1 O ASN A 114 N SER A 107 SHEET 3 AA3 7 VAL A 449 PRO A 459 -1 O PHE A 452 N PHE A 113 SHEET 4 AA3 7 ARG A 149 ASP A 156 -1 N GLU A 150 O GLY A 458 SHEET 5 AA3 7 PHE A 312 THR A 320 -1 O PHE A 312 N VAL A 155 SHEET 6 AA3 7 PHE A 329 GLN A 338 -1 O PHE A 335 N VAL A 315 SHEET 7 AA3 7 VAL A 341 GLU A 344 -1 O ILE A 343 N TYR A 336 SHEET 1 AA4 2 TYR A 70 THR A 71 0 SHEET 2 AA4 2 LEU A 74 TRP A 75 -1 O LEU A 74 N THR A 71 SHEET 1 AA5 2 VAL A 118 VAL A 120 0 SHEET 2 AA5 2 THR A 125 ILE A 127 -1 O ASN A 126 N THR A 119 SHEET 1 AA6 2 TRP A 206 ILE A 207 0 SHEET 2 AA6 2 LEU A 210 ALA A 211 -1 O LEU A 210 N ILE A 207 SHEET 1 AA7 2 THR A 217 ILE A 219 0 SHEET 2 AA7 2 ASP A 222 LYS A 227 -1 O SER A 225 N ILE A 219 SHEET 1 AA8 2 GLY A 231 CYS A 233 0 SHEET 2 AA8 2 THR A 260 CYS A 262 -1 O THR A 260 N CYS A 233 SHEET 1 AA9 2 TYR A 298 GLY A 299 0 SHEET 2 AA9 2 LEU A 306 ASP A 307 1 O LEU A 306 N GLY A 299 SHEET 1 AB1 3 ASN B 21 VAL B 22 0 SHEET 2 AB1 3 CYS B 90 ILE B 92 1 O ILE B 92 N ASN B 21 SHEET 3 AB1 3 ALA B 60 THR B 62 -1 N HIS B 61 O ALA B 91 SHEET 1 AB211 GLY B 106 THR B 109 0 SHEET 2 AB211 LYS B 112 LYS B 116 -1 O ASN B 114 N SER B 107 SHEET 3 AB211 VAL B 449 PRO B 459 -1 O PHE B 452 N PHE B 113 SHEET 4 AB211 LEU B 31 ALA B 40 1 N CYS B 38 O PHE B 457 SHEET 5 AB211 ASN B 43 LEU B 53 -1 O GLN B 45 N VAL B 37 SHEET 6 AB211 ALA B 129 LEU B 134 -1 O LEU B 134 N ALA B 50 SHEET 7 AB211 MET B 394 TRP B 401 -1 O MET B 398 N THR B 131 SHEET 8 AB211 ASN B 165 VAL B 171 -1 N TYR B 169 O VAL B 397 SHEET 9 AB211 GLU B 236 ALA B 242 -1 O LEU B 237 N PHE B 170 SHEET 10 AB211 GLN B 247 HIS B 252 -1 O THR B 250 N ASP B 238 SHEET 11 AB211 CYS B 285 ALA B 288 -1 O PHE B 287 N PHE B 249 SHEET 1 AB310 MET B 143 PHE B 144 0 SHEET 2 AB310 MET B 394 TRP B 401 -1 O MET B 394 N PHE B 144 SHEET 3 AB310 ALA B 129 LEU B 134 -1 N THR B 131 O MET B 398 SHEET 4 AB310 ASN B 43 LEU B 53 -1 N ALA B 50 O LEU B 134 SHEET 5 AB310 LEU B 31 ALA B 40 -1 N VAL B 37 O GLN B 45 SHEET 6 AB310 VAL B 449 PRO B 459 1 O PHE B 457 N CYS B 38 SHEET 7 AB310 ARG B 149 ASP B 156 -1 N ASP B 154 O GLY B 453 SHEET 8 AB310 PHE B 312 THR B 320 -1 O PHE B 312 N VAL B 155 SHEET 9 AB310 PHE B 329 GLN B 338 -1 O LYS B 330 N ILE B 319 SHEET 10 AB310 VAL B 341 GLU B 344 -1 O ILE B 343 N TYR B 336 SHEET 1 AB4 2 TYR B 70 THR B 71 0 SHEET 2 AB4 2 LEU B 74 TRP B 75 -1 O LEU B 74 N THR B 71 SHEET 1 AB5 2 VAL B 118 VAL B 120 0 SHEET 2 AB5 2 THR B 125 ILE B 127 -1 O ASN B 126 N THR B 119 SHEET 1 AB6 2 TRP B 206 ILE B 207 0 SHEET 2 AB6 2 LEU B 210 ALA B 211 -1 O LEU B 210 N ILE B 207 SHEET 1 AB7 2 THR B 217 ILE B 219 0 SHEET 2 AB7 2 ASP B 222 LYS B 227 -1 O LYS B 227 N THR B 217 SHEET 1 AB8 2 GLY B 231 CYS B 233 0 SHEET 2 AB8 2 THR B 260 CYS B 262 -1 O THR B 260 N CYS B 233 SHEET 1 AB9 2 TYR B 298 GLY B 299 0 SHEET 2 AB9 2 LEU B 306 ASP B 307 1 O LEU B 306 N GLY B 299 SSBOND 1 CYS A 38 CYS A 44 1555 1555 2.21 SSBOND 2 CYS A 69 CYS A 90 1555 1555 2.02 SSBOND 3 CYS A 80 CYS A 86 1555 1555 2.17 SSBOND 4 CYS A 162 CYS A 431 1555 1555 2.10 SSBOND 5 CYS A 196 CYS A 234 1555 1555 2.13 SSBOND 6 CYS A 200 CYS A 233 1555 1555 2.04 SSBOND 7 CYS A 254 CYS A 280 1555 1555 2.09 SSBOND 8 CYS A 262 CYS A 267 1555 1555 2.08 SSBOND 9 CYS A 285 CYS A 364 1555 1555 2.02 SSBOND 10 CYS B 38 CYS B 44 1555 1555 2.17 SSBOND 11 CYS B 69 CYS B 90 1555 1555 2.04 SSBOND 12 CYS B 80 CYS B 86 1555 1555 2.16 SSBOND 13 CYS B 162 CYS B 431 1555 1555 2.11 SSBOND 14 CYS B 196 CYS B 234 1555 1555 2.13 SSBOND 15 CYS B 200 CYS B 233 1555 1555 2.10 SSBOND 16 CYS B 254 CYS B 280 1555 1555 2.09 SSBOND 17 CYS B 262 CYS B 267 1555 1555 2.15 SSBOND 18 CYS B 285 CYS B 364 1555 1555 2.03 LINK C PCA A 20 N ASN A 21 1555 1555 1.32 LINK C PCA B 20 N ASN B 21 1555 1555 1.34 CISPEP 1 THR A 255 PRO A 256 0 -9.58 CISPEP 2 TYR A 415 PRO A 416 0 0.11 CISPEP 3 THR B 255 PRO B 256 0 -6.57 CISPEP 4 TYR B 415 PRO B 416 0 2.98 SITE 1 AC1 8 GLN A 199 GLU A 236 ASP A 238 HIS A 252 SITE 2 AC1 8 HOH A 617 HOH A 659 HOH A 616 HOH A 612 SITE 1 AC2 7 SER B 302 THR B 303 LYS B 305 ILE B 319 SITE 2 AC2 7 HOH B 661 HOH B 673 HOH B 710 CRYST1 128.290 47.020 173.500 90.00 108.23 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007795 0.000000 0.002567 0.00000 SCALE2 0.000000 0.021268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006068 0.00000 HETATM 1 N PCA A 20 -24.640 17.068 43.846 1.00 23.25 N HETATM 2 CA PCA A 20 -23.611 16.245 44.454 1.00 22.18 C HETATM 3 CB PCA A 20 -23.358 15.123 43.447 1.00 22.89 C HETATM 4 CG PCA A 20 -24.087 15.502 42.174 1.00 22.04 C HETATM 5 CD PCA A 20 -24.889 16.704 42.572 1.00 22.10 C HETATM 6 OE PCA A 20 -25.643 17.268 41.825 1.00 24.15 O HETATM 7 C PCA A 20 -22.334 17.009 44.673 1.00 25.41 C HETATM 8 O PCA A 20 -21.955 17.881 43.846 1.00 26.66 O