HEADER RNA 16-JAN-15 4XNR TITLE VIBRIO VULNIFICUS ADENINE RIBOSWITCH APTAMER DOMAIN, SYNTHESIZED BY TITLE 2 POSITION-SELECTIVE LABELING OF RNA (PLOR), IN COMPLEX WITH ADENINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIBRIO VULNIFICUS ADENINE RIBOSWITCH; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 4 ORGANISM_TAXID: 672 KEYWDS RNA, RIBOSWITCH EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHANG,Y.LIU,Y.-X.WANG,A.R.FERRE-D'AMARE REVDAT 5 27-SEP-23 4XNR 1 LINK REVDAT 4 22-NOV-17 4XNR 1 SOURCE JRNL REMARK REVDAT 3 01-JUL-15 4XNR 1 JRNL REVDAT 2 27-MAY-15 4XNR 1 JRNL REVDAT 1 06-MAY-15 4XNR 0 JRNL AUTH Y.LIU,E.HOLMSTROM,J.ZHANG,P.YU,J.WANG,M.A.DYBA,D.CHEN, JRNL AUTH 2 J.YING,S.LOCKETT,D.J.NESBITT,A.R.FERRE-D'AMARE,R.SOUSA, JRNL AUTH 3 J.R.STAGNO,Y.X.WANG JRNL TITL SYNTHESIS AND APPLICATIONS OF RNAS WITH POSITION-SELECTIVE JRNL TITL 2 LABELLING AND MOSAIC COMPOSITION. JRNL REF NATURE V. 522 368 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 25938715 JRNL DOI 10.1038/NATURE14352 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1839) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 10358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1300 - 5.1870 0.99 1291 149 0.1510 0.1350 REMARK 3 2 5.1870 - 4.1178 1.00 1276 145 0.1400 0.1830 REMARK 3 3 4.1178 - 3.5975 1.00 1302 145 0.1710 0.2080 REMARK 3 4 3.5975 - 3.2687 1.00 1300 146 0.1760 0.1770 REMARK 3 5 3.2687 - 3.0344 0.99 1310 139 0.1940 0.2140 REMARK 3 6 3.0344 - 2.8556 1.00 1293 140 0.2770 0.3060 REMARK 3 7 2.8556 - 2.7126 1.00 1313 142 0.3000 0.3340 REMARK 3 8 2.7126 - 2.5945 1.00 1304 136 0.3370 0.3680 REMARK 3 9 2.5945 - 2.4946 0.99 1253 138 0.3250 0.3920 REMARK 3 10 2.4946 - 2.4086 1.00 1348 151 0.3260 0.4070 REMARK 3 11 2.4086 - 2.3332 1.00 1284 143 0.3390 0.3440 REMARK 3 12 2.3332 - 2.2666 1.00 1281 144 0.3620 0.3320 REMARK 3 13 2.2666 - 2.2100 0.98 1291 144 0.3680 0.3820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 1688 REMARK 3 ANGLE : 0.274 2623 REMARK 3 CHIRALITY : 0.015 355 REMARK 3 PLANARITY : 0.001 72 REMARK 3 DIHEDRAL : 11.084 849 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN X AND RESID 101:101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9865 17.8451 3.8268 REMARK 3 T TENSOR REMARK 3 T11: 0.5254 T22: 0.5640 REMARK 3 T33: 0.4009 T12: 0.1408 REMARK 3 T13: 0.0115 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.3616 L22: 5.1293 REMARK 3 L33: 7.7205 L12: 0.8122 REMARK 3 L13: -3.5014 L23: 4.2918 REMARK 3 S TENSOR REMARK 3 S11: 0.2302 S12: 0.1815 S13: -0.2949 REMARK 3 S21: 0.3033 S22: 0.8601 S23: -0.6012 REMARK 3 S31: -1.2559 S32: 0.3813 S33: -1.1493 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN X AND RESID 13:20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5462 3.4111 1.5239 REMARK 3 T TENSOR REMARK 3 T11: 0.7773 T22: 0.8794 REMARK 3 T33: 1.3997 T12: 0.2398 REMARK 3 T13: -0.0223 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.2512 L22: 2.4356 REMARK 3 L33: 3.4037 L12: -1.7743 REMARK 3 L13: -2.6709 L23: 1.7975 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.6720 S13: -1.6436 REMARK 3 S21: -0.1690 S22: -0.7915 S23: 0.5481 REMARK 3 S31: 0.0354 S32: -0.2474 S33: 0.7813 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN X AND RESID 21:38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7907 27.6976 -3.7608 REMARK 3 T TENSOR REMARK 3 T11: 0.4249 T22: 0.4805 REMARK 3 T33: 0.4838 T12: 0.0753 REMARK 3 T13: -0.0472 T23: -0.1015 REMARK 3 L TENSOR REMARK 3 L11: 3.0088 L22: 4.4695 REMARK 3 L33: 1.8842 L12: -1.1652 REMARK 3 L13: 0.8481 L23: -1.5915 REMARK 3 S TENSOR REMARK 3 S11: 0.2959 S12: 0.2432 S13: -0.0670 REMARK 3 S21: -0.4089 S22: -0.2369 S23: 0.6740 REMARK 3 S31: 0.1418 S32: -0.0285 S33: -0.0456 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN X AND RESID 39:46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7512 32.2687 -1.3236 REMARK 3 T TENSOR REMARK 3 T11: 0.4878 T22: 0.5723 REMARK 3 T33: 0.4751 T12: 0.0723 REMARK 3 T13: -0.0520 T23: -0.1570 REMARK 3 L TENSOR REMARK 3 L11: 2.2483 L22: 3.3374 REMARK 3 L33: 0.6378 L12: -0.7038 REMARK 3 L13: -0.3631 L23: -1.2714 REMARK 3 S TENSOR REMARK 3 S11: 0.1816 S12: 0.2744 S13: 0.1511 REMARK 3 S21: -0.0028 S22: -0.3988 S23: 0.0330 REMARK 3 S31: -0.2267 S32: 0.3113 S33: 0.1101 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN X AND RESID 47:59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5692 19.5853 -1.3402 REMARK 3 T TENSOR REMARK 3 T11: 0.4822 T22: 0.4278 REMARK 3 T33: 0.3555 T12: 0.1320 REMARK 3 T13: 0.0366 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 5.7921 L22: 5.4702 REMARK 3 L33: 4.3460 L12: 2.0742 REMARK 3 L13: 1.9759 L23: -0.1957 REMARK 3 S TENSOR REMARK 3 S11: -0.3756 S12: 0.1550 S13: -0.1294 REMARK 3 S21: -0.3285 S22: 0.1763 S23: 0.3592 REMARK 3 S31: -0.5585 S32: 0.3196 S33: 0.1862 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN X AND RESID 60:64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3708 25.3560 -7.1179 REMARK 3 T TENSOR REMARK 3 T11: 0.6318 T22: 0.7778 REMARK 3 T33: 1.6608 T12: 0.1450 REMARK 3 T13: -0.1871 T23: -0.0923 REMARK 3 L TENSOR REMARK 3 L11: 4.9756 L22: 1.8871 REMARK 3 L33: 3.5082 L12: 0.1764 REMARK 3 L13: 0.2874 L23: 1.5310 REMARK 3 S TENSOR REMARK 3 S11: 0.6955 S12: 0.7668 S13: -1.4764 REMARK 3 S21: -0.3632 S22: -0.9003 S23: 2.3528 REMARK 3 S31: -0.0759 S32: -0.7974 S33: 0.3572 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN X AND RESID 65:72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3937 19.8704 -2.1986 REMARK 3 T TENSOR REMARK 3 T11: 0.5604 T22: 0.4770 REMARK 3 T33: 0.7436 T12: -0.0011 REMARK 3 T13: -0.0877 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 1.7882 L22: 3.9279 REMARK 3 L33: 2.1015 L12: -1.4175 REMARK 3 L13: 0.2944 L23: -0.5690 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: -0.1116 S13: -0.2337 REMARK 3 S21: 0.3634 S22: -0.0598 S23: 0.9282 REMARK 3 S31: -0.1882 S32: -0.0712 S33: -0.0369 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN X AND RESID 73:83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9975 5.5560 2.8704 REMARK 3 T TENSOR REMARK 3 T11: 0.5277 T22: 0.6963 REMARK 3 T33: 1.0115 T12: 0.1253 REMARK 3 T13: 0.0106 T23: -0.0619 REMARK 3 L TENSOR REMARK 3 L11: 0.9842 L22: 4.4393 REMARK 3 L33: 2.5102 L12: -0.3245 REMARK 3 L13: 0.7364 L23: 1.0145 REMARK 3 S TENSOR REMARK 3 S11: -0.2438 S12: 0.2574 S13: -1.6555 REMARK 3 S21: 0.2151 S22: 0.5055 S23: -0.5792 REMARK 3 S31: 0.1144 S32: -0.2037 S33: -0.3511 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 49.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TZX REMARK 200 REMARK 200 REMARK: RECTANGULAR CRYSTALS WITH MAXIMAL DIMENSIONS OF 250 X 50 X REMARK 200 50 MICROMETERS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MG, PEG, PH 8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 24.74100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 77.34100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.74100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 77.34100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 A X 23 O HOH X 244 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 106 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A X 23 OP2 REMARK 620 2 HOH X 223 O 171.5 REMARK 620 3 HOH X 237 O 67.7 106.1 REMARK 620 4 HOH X 244 O 47.0 129.9 92.7 REMARK 620 5 HOH X 255 O 98.7 74.3 83.7 61.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A X 24 OP1 REMARK 620 2 HOH X 225 O 86.1 REMARK 620 3 HOH X 226 O 88.0 90.9 REMARK 620 4 HOH X 227 O 75.8 82.8 163.0 REMARK 620 5 HOH X 228 O 166.5 81.3 87.4 107.1 REMARK 620 6 HOH X 260 O 111.7 161.8 86.0 104.8 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 224 O REMARK 620 2 HOH X 238 O 83.5 REMARK 620 3 HOH X 243 O 72.2 127.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 229 O REMARK 620 2 HOH X 230 O 59.2 REMARK 620 3 HOH X 231 O 85.7 84.1 REMARK 620 4 HOH X 257 O 75.1 71.7 154.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 107 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH X 207 O REMARK 620 2 HOH X 208 O 71.4 REMARK 620 3 HOH X 210 O 152.3 87.8 REMARK 620 4 HOH X 217 O 77.7 90.7 84.7 REMARK 620 5 HOH X 218 O 107.4 99.2 93.5 169.9 REMARK 620 6 HOH X 219 O 114.4 169.1 89.3 99.6 70.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADE X 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG X 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG X 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG X 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG X 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG X 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG X 107 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XL0 RELATED DB: PDB DBREF 4XNR X 13 83 PDB 4XNR 4XNR 13 83 SEQRES 1 X 71 G G G A A G A U A U A A U SEQRES 2 X 71 C C U A A U G A U A U G G SEQRES 3 X 71 U U U G G G A G U U U C U SEQRES 4 X 71 A C C A A G A G C C U U A SEQRES 5 X 71 A A C U C U U G A U U A U SEQRES 6 X 71 C U U C C C HET ADE X 101 10 HET MG X 102 1 HET MG X 103 1 HET MG X 104 1 HET MG X 105 1 HET MG X 106 1 HET MG X 107 1 HETNAM ADE ADENINE HETNAM MG MAGNESIUM ION FORMUL 2 ADE C5 H5 N5 FORMUL 3 MG 6(MG 2+) FORMUL 9 HOH *64(H2 O) LINK OP2 A X 23 MG MG X 106 1555 1555 2.96 LINK OP1 A X 24 MG MG X 103 1555 1555 2.10 LINK O2 U X 47 MG MG X 104 1555 1555 2.63 LINK MG MG X 102 O HOH X 224 1555 1555 2.30 LINK MG MG X 102 O HOH X 238 1555 1555 2.30 LINK MG MG X 102 O HOH X 243 1555 1555 2.14 LINK MG MG X 103 O HOH X 225 1555 1555 2.13 LINK MG MG X 103 O HOH X 226 1555 1555 2.10 LINK MG MG X 103 O HOH X 227 1555 1555 2.16 LINK MG MG X 103 O HOH X 228 1555 1555 2.18 LINK MG MG X 103 O HOH X 260 1555 1555 2.10 LINK MG MG X 105 O HOH X 229 1555 1555 2.37 LINK MG MG X 105 O HOH X 230 1555 1555 2.44 LINK MG MG X 105 O HOH X 231 1555 1555 2.16 LINK MG MG X 105 O HOH X 257 1555 1555 2.30 LINK MG MG X 106 O HOH X 223 1555 1555 2.62 LINK MG MG X 106 O HOH X 237 1555 1555 2.20 LINK MG MG X 106 O HOH X 244 1555 1555 2.09 LINK MG MG X 106 O HOH X 255 1555 1555 2.39 LINK MG MG X 107 O HOH X 207 1555 4455 2.17 LINK MG MG X 107 O HOH X 208 1555 1555 2.15 LINK MG MG X 107 O HOH X 210 1555 1555 2.20 LINK MG MG X 107 O HOH X 217 1555 4455 2.16 LINK MG MG X 107 O HOH X 218 1555 1555 2.12 LINK MG MG X 107 O HOH X 219 1555 4455 2.20 SITE 1 AC1 9 A X 21 U X 22 U X 47 U X 51 SITE 2 AC1 9 A X 52 A X 73 U X 74 U X 75 SITE 3 AC1 9 MG X 104 SITE 1 AC2 3 HOH X 224 HOH X 238 HOH X 243 SITE 1 AC3 6 A X 24 HOH X 225 HOH X 226 HOH X 227 SITE 2 AC3 6 HOH X 228 HOH X 260 SITE 1 AC4 5 A X 21 U X 47 U X 49 C X 50 SITE 2 AC4 5 ADE X 101 SITE 1 AC5 4 HOH X 229 HOH X 230 HOH X 231 HOH X 257 SITE 1 AC6 5 A X 23 HOH X 223 HOH X 237 HOH X 244 SITE 2 AC6 5 HOH X 255 SITE 1 AC7 6 HOH X 207 HOH X 208 HOH X 210 HOH X 217 SITE 2 AC7 6 HOH X 218 HOH X 219 CRYST1 49.482 154.682 25.178 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020209 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.039717 0.00000