HEADER TRANSPORT PROTEIN/INHIBITOR 16-JAN-15 4XNU TITLE X-RAY STRUCTURE OF DROSOPHILA DOPAMINE TRANSPORTER IN COMPLEX WITH TITLE 2 NISOXETINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRAL MEMBRANE PROTEIN-DOPAMINE TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY FRAGMENT LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ANTIBODY FRAGMENT HEAVY CHAIN; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_TAXID: 7227; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293-GNTI; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA KEYWDS INTEGRAL MEMBRANE PROTEIN, ALL-ALPHA HELICAL ANTIDEPRESSANT COMPLEX, KEYWDS 2 TRANSPORT PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.ARAVIND,K.WANG,E.GOUAUX REVDAT 5 27-SEP-23 4XNU 1 REMARK REVDAT 4 31-MAY-17 4XNU 1 REMARK REVDAT 3 10-JUN-15 4XNU 1 JRNL REVDAT 2 27-MAY-15 4XNU 1 JRNL REVDAT 1 13-MAY-15 4XNU 0 JRNL AUTH A.PENMATSA,K.H.WANG,E.GOUAUX JRNL TITL X-RAY STRUCTURES OF DROSOPHILA DOPAMINE TRANSPORTER IN JRNL TITL 2 COMPLEX WITH NISOXETINE AND REBOXETINE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 506 2015 JRNL REFN ESSN 1545-9985 JRNL PMID 25961798 JRNL DOI 10.1038/NSMB.3029 REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 43351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.550 REMARK 3 FREE R VALUE TEST SET COUNT : 1971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1053 - 7.1541 0.98 3148 149 0.2347 0.2434 REMARK 3 2 7.1541 - 5.6815 1.00 3050 146 0.2392 0.2620 REMARK 3 3 5.6815 - 4.9642 1.00 3029 144 0.2095 0.2213 REMARK 3 4 4.9642 - 4.5107 1.00 3018 144 0.1906 0.2120 REMARK 3 5 4.5107 - 4.1877 1.00 2985 142 0.1950 0.2597 REMARK 3 6 4.1877 - 3.9409 1.00 2979 141 0.2187 0.2252 REMARK 3 7 3.9409 - 3.7436 1.00 2974 142 0.2270 0.2596 REMARK 3 8 3.7436 - 3.5807 1.00 2988 143 0.2315 0.2478 REMARK 3 9 3.5807 - 3.4429 1.00 2942 140 0.2337 0.2698 REMARK 3 10 3.4429 - 3.3241 1.00 2975 142 0.2367 0.2872 REMARK 3 11 3.3241 - 3.2202 1.00 2969 141 0.2584 0.3564 REMARK 3 12 3.2202 - 3.1282 1.00 2927 139 0.2741 0.2923 REMARK 3 13 3.1282 - 3.0459 1.00 2962 141 0.2868 0.3463 REMARK 3 14 3.0459 - 2.9716 0.82 2434 117 0.2813 0.3106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7688 REMARK 3 ANGLE : 0.846 10491 REMARK 3 CHIRALITY : 0.038 1168 REMARK 3 PLANARITY : 0.004 1306 REMARK 3 DIHEDRAL : 11.723 2619 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44010 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.91500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4M48 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 350 MME 38%, GLYCINE 0.1M, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.45050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.84100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.83350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.84100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.45050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.83350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET H -18 REMARK 465 ASN H -17 REMARK 465 PHE H -16 REMARK 465 GLY H -15 REMARK 465 LEU H -14 REMARK 465 ARG H -13 REMARK 465 LEU H -12 REMARK 465 VAL H -11 REMARK 465 PHE H -10 REMARK 465 LEU H -9 REMARK 465 VAL H -8 REMARK 465 LEU H -7 REMARK 465 ILE H -6 REMARK 465 LEU H -5 REMARK 465 LYS H -4 REMARK 465 GLY H -3 REMARK 465 VAL H -2 REMARK 465 GLN H -1 REMARK 465 CYS H 0 REMARK 465 GLY H 135 REMARK 465 ASP H 136 REMARK 465 THR H 137 REMARK 465 GLY H 220 REMARK 465 PRO H 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 162 OG REMARK 470 GLN A 163 CG CD OE1 NE2 REMARK 470 TYR A 305 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 ARG A 442 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 446 CG CD1 CD2 REMARK 470 VAL A 457 CG1 CG2 REMARK 470 ARG A 476 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 517 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 580 CG CD1 CD2 REMARK 470 LEU A 586 CG CD1 CD2 REMARK 470 ARG A 587 CG CD NE CZ NH1 NH2 REMARK 470 SER L 128 OG REMARK 470 LYS L 148 CG CD CE NZ REMARK 470 SER L 169 OG REMARK 470 LYS L 184 CG CD CE NZ REMARK 470 GLU L 186 CG CD OE1 OE2 REMARK 470 GLU H 1 CG CD OE1 OE2 REMARK 470 GLN H 3 CG CD OE1 NE2 REMARK 470 THR H 28 OG1 CG2 REMARK 470 SER H 30 OG REMARK 470 GLU H 42 CG CD OE1 OE2 REMARK 470 ARG H 76 CG CD NE CZ NH1 NH2 REMARK 470 GLN H 111 CG CD OE1 NE2 REMARK 470 VAL H 133 CG1 CG2 REMARK 470 CYS H 134 SG REMARK 470 THR H 138 OG1 CG2 REMARK 470 VAL H 189 CG1 CG2 REMARK 470 SER H 198 OG REMARK 470 THR H 200 OG1 CG2 REMARK 470 ARG H 219 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER H 31 OE1 GLU H 100 2.08 REMARK 500 O ARG A 598 O HOH A 707 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 414 CB - CG - CD2 ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 31 32.13 -83.31 REMARK 500 ASP A 46 -155.71 -155.33 REMARK 500 ASN A 60 46.69 -107.02 REMARK 500 PHE A 252 26.58 -74.32 REMARK 500 VAL A 391 -61.34 -129.64 REMARK 500 TYR A 477 -39.87 -132.91 REMARK 500 ALA A 548 -123.79 54.60 REMARK 500 ARG A 598 92.90 -69.67 REMARK 500 SER L 53 -30.84 -136.63 REMARK 500 ALA L 84 96.63 -64.23 REMARK 500 ASN L 191 -53.83 -132.68 REMARK 500 ARG L 212 27.44 -76.54 REMARK 500 ASN H 161 71.62 47.23 REMARK 500 SER H 162 14.03 51.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 42 O REMARK 620 2 VAL A 45 O 78.4 REMARK 620 3 LEU A 417 O 160.3 93.2 REMARK 620 4 ASP A 420 OD1 76.5 131.3 96.8 REMARK 620 5 SER A 421 OG 91.1 96.3 107.6 125.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 44 O REMARK 620 2 ASN A 49 OD1 99.8 REMARK 620 3 SER A 320 O 73.9 156.3 REMARK 620 4 SER A 320 OG 133.5 106.9 66.3 REMARK 620 5 ASN A 352 OD1 64.7 89.2 67.4 78.2 REMARK 620 6 HOH A 708 O 104.9 99.8 103.8 107.0 167.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 41U A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M48 RELATED DB: PDB REMARK 900 RELATED ID: 4XNX RELATED DB: PDB DBREF 4XNU A 25 599 PDB 4XNU 4XNU 25 599 DBREF 4XNU L 1 214 PDB 4XNU 4XNU 1 214 DBREF 4XNU H -18 221 PDB 4XNU 4XNU -18 221 SEQRES 1 A 532 ASP GLU ARG GLU THR TRP SER GLY LYS VAL ASP PHE LEU SEQRES 2 A 532 LEU SER VAL ILE GLY PHE ALA VAL ASP LEU ALA ASN VAL SEQRES 3 A 532 TRP ARG PHE PRO TYR LEU CYS TYR LYS ASN GLY GLY GLY SEQRES 4 A 532 ALA PHE LEU VAL PRO TYR GLY ILE MET LEU ALA VAL GLY SEQRES 5 A 532 GLY ILE PRO LEU PHE TYR MET GLU LEU ALA LEU GLY GLN SEQRES 6 A 532 HIS ASN ARG LYS GLY ALA ILE THR CYS TRP GLY ARG LEU SEQRES 7 A 532 VAL PRO LEU PHE LYS GLY ILE GLY TYR ALA VAL VAL LEU SEQRES 8 A 532 ILE ALA PHE TYR VAL ASP PHE TYR TYR ASN VAL ILE ILE SEQRES 9 A 532 ALA TRP SER LEU ARG PHE PHE PHE ALA SER PHE THR ASN SEQRES 10 A 532 SER LEU PRO TRP THR SER CYS ASN ASN ILE TRP ASN THR SEQRES 11 A 532 PRO ASN CYS ARG PRO PHE GLU SER GLN GLY PHE GLN SER SEQRES 12 A 532 ALA ALA SER GLU TYR PHE ASN ARG TYR ILE LEU GLU LEU SEQRES 13 A 532 ASN ARG SER GLU GLY ILE HIS ASP LEU GLY ALA ILE LYS SEQRES 14 A 532 TRP ASP MET ALA LEU CYS LEU LEU ILE VAL TYR LEU ILE SEQRES 15 A 532 CYS TYR PHE SER LEU TRP LYS GLY ILE SER THR SER GLY SEQRES 16 A 532 LYS VAL VAL TRP PHE THR ALA LEU PHE PRO TYR ALA ALA SEQRES 17 A 532 LEU LEU ILE LEU LEU ILE ARG GLY LEU THR LEU PRO GLY SEQRES 18 A 532 SER PHE LEU GLY ILE GLN TYR TYR LEU THR PRO ASN PHE SEQRES 19 A 532 SER ALA ILE TYR LYS ALA GLU VAL TRP ALA ASP ALA ALA SEQRES 20 A 532 THR GLN VAL PHE PHE SER LEU GLY PRO GLY PHE GLY VAL SEQRES 21 A 532 LEU LEU ALA TYR ALA SER TYR ASN LYS TYR HIS ASN ASN SEQRES 22 A 532 VAL TYR LYS ASP ALA LEU LEU THR SER PHE ILE ASN SER SEQRES 23 A 532 ALA THR SER PHE ILE ALA GLY PHE VAL ILE PHE SER VAL SEQRES 24 A 532 LEU GLY TYR MET ALA HIS THR LEU GLY VAL ARG ILE GLU SEQRES 25 A 532 ASP VAL ALA THR GLU GLY PRO GLY LEU VAL PHE VAL VAL SEQRES 26 A 532 TYR PRO ALA ALA ILE ALA THR MET PRO ALA SER THR PHE SEQRES 27 A 532 TRP ALA LEU ILE PHE PHE MET MET LEU ALA THR LEU GLY SEQRES 28 A 532 LEU ASP SER SER PHE GLY GLY SER GLU ALA ILE ILE THR SEQRES 29 A 532 ALA LEU SER ASP GLU PHE PRO LYS ILE LYS ARG ASN ARG SEQRES 30 A 532 GLU LEU PHE VAL ALA GLY LEU PHE SER LEU TYR PHE VAL SEQRES 31 A 532 VAL GLY LEU ALA SER CYS THR GLN GLY GLY PHE TYR PHE SEQRES 32 A 532 PHE HIS LEU LEU ASP ARG TYR ALA ALA GLY TYR SER ILE SEQRES 33 A 532 LEU VAL ALA VAL PHE PHE GLU ALA ILE ALA VAL SER TRP SEQRES 34 A 532 ILE TYR GLY THR ASN ARG PHE SER GLU ASP ILE ARG ASP SEQRES 35 A 532 MET ILE GLY PHE PRO PRO GLY ARG TYR TRP GLN VAL CYS SEQRES 36 A 532 TRP ARG PHE VAL ALA PRO ILE PHE LEU LEU PHE ILE THR SEQRES 37 A 532 VAL TYR LEU LEU ILE GLY TYR GLU PRO LEU THR TYR ALA SEQRES 38 A 532 ASP TYR VAL TYR PRO SER TRP ALA ASN ALA LEU GLY TRP SEQRES 39 A 532 CYS ILE ALA GLY SER SER VAL VAL MET ILE PRO ALA VAL SEQRES 40 A 532 ALA ILE PHE LYS LEU LEU SER THR PRO GLY SER LEU ARG SEQRES 41 A 532 GLN ARG PHE THR ILE LEU THR THR PRO TRP ARG ASP SEQRES 1 L 214 GLU ASN VAL LEU THR GLN SER PRO ALA ILE MET SER THR SEQRES 2 L 214 SER PRO GLY GLU LYS VAL THR MET THR CYS ARG ALA SER SEQRES 3 L 214 SER SER VAL GLY SER SER TYR LEU HIS TRP TYR GLN GLN SEQRES 4 L 214 LYS SER GLY ALA SER PRO LYS LEU TRP ILE TYR SER THR SEQRES 5 L 214 SER ASN LEU ALA SER GLY VAL PRO ALA ARG PHE SER GLY SEQRES 6 L 214 SER GLY SER GLY THR SER TYR SER LEU THR ILE SER SER SEQRES 7 L 214 VAL GLU ALA GLU ASP ALA ALA THR TYR TYR CYS GLN GLN SEQRES 8 L 214 PHE SER GLY TYR PRO LEU THR PHE GLY SER GLY THR LYS SEQRES 9 L 214 LEU GLU MET LYS ARG ALA ASP ALA ALA PRO THR VAL SER SEQRES 10 L 214 ILE PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY SEQRES 11 L 214 ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS SEQRES 12 L 214 ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG SEQRES 13 L 214 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 L 214 LYS ASP SER THR TYR SER MET SER SER THR LEU THR LEU SEQRES 15 L 214 THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS SEQRES 16 L 214 GLU ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SEQRES 17 L 214 SER PHE ASN ARG ASN GLU SEQRES 1 H 240 MET ASN PHE GLY LEU ARG LEU VAL PHE LEU VAL LEU ILE SEQRES 2 H 240 LEU LYS GLY VAL GLN CYS GLU VAL GLN LEU VAL GLU SER SEQRES 3 H 240 GLY GLY GLY LEU VAL LYS PRO GLY GLY SER LEU LYS LEU SEQRES 4 H 240 SER CYS ALA ALA SER GLY PHE THR PHE SER SER TYR ALA SEQRES 5 H 240 MET SER TRP VAL ARG GLN SER PRO GLU LYS ARG LEU GLU SEQRES 6 H 240 TRP VAL ALA GLU ILE SER SER GLY GLY ARG TYR ILE TYR SEQRES 7 H 240 TYR SER ASP THR VAL THR GLY ARG PHE THR ILE SER ARG SEQRES 8 H 240 ASP ASN ALA ARG ASN ILE LEU HIS LEU GLU MET SER SER SEQRES 9 H 240 LEU ARG SER GLU ASP THR ALA MET TYR TYR CYS ALA ARG SEQRES 10 H 240 GLY GLU VAL ARG GLN ARG GLY PHE ASP TYR TRP GLY GLN SEQRES 11 H 240 GLY THR THR LEU THR VAL SER SER ALA LYS THR THR ALA SEQRES 12 H 240 PRO SER VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR SEQRES 13 H 240 THR GLY SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 14 H 240 TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SEQRES 15 H 240 SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 16 H 240 GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL SEQRES 17 H 240 THR SER SER THR TRP PRO SER GLN SER ILE THR CYS ASN SEQRES 18 H 240 VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS SEQRES 19 H 240 ILE GLU PRO ARG GLY PRO HET NA A 601 1 HET NA A 602 1 HET CL A 603 1 HET CLR A 604 28 HET 41U A 605 20 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM CLR CHOLESTEROL HETNAM 41U NISOXETINE HETSYN 41U (3S)-3-(2-METHOXYPHENOXY)-N-METHYL-3-PHENYLPROPAN-1- HETSYN 2 41U AMINE FORMUL 4 NA 2(NA 1+) FORMUL 6 CL CL 1- FORMUL 7 CLR C27 H46 O FORMUL 8 41U C17 H21 N O2 FORMUL 9 HOH *8(H2 O) HELIX 1 AA1 GLY A 32 VAL A 45 1 14 HELIX 2 AA2 ASP A 46 ARG A 52 1 7 HELIX 3 AA3 ARG A 52 ASN A 60 1 9 HELIX 4 AA4 GLY A 61 ALA A 64 5 4 HELIX 5 AA5 PHE A 65 GLY A 76 1 12 HELIX 6 AA6 GLY A 76 ARG A 92 1 17 HELIX 7 AA7 GLY A 94 VAL A 103 1 10 HELIX 8 AA8 LYS A 107 ASP A 121 1 15 HELIX 9 AA9 TYR A 124 SER A 138 1 15 HELIX 10 AB1 ALA A 211 TYR A 219 1 9 HELIX 11 AB2 GLU A 222 SER A 226 5 5 HELIX 12 AB3 LYS A 236 TRP A 255 1 20 HELIX 13 AB4 GLY A 257 ALA A 269 1 13 HELIX 14 AB5 LEU A 270 LEU A 286 1 17 HELIX 15 AB6 GLY A 288 THR A 298 1 11 HELIX 16 AB7 ASN A 300 TYR A 305 5 6 HELIX 17 AB8 LYS A 306 GLY A 322 1 17 HELIX 18 AB9 GLY A 326 SER A 333 1 8 HELIX 19 AC1 ASN A 340 LEU A 374 1 35 HELIX 20 AC2 ARG A 377 ALA A 382 1 6 HELIX 21 AC3 GLY A 385 PHE A 390 1 6 HELIX 22 AC4 VAL A 391 ALA A 398 1 8 HELIX 23 AC5 ALA A 402 ASP A 435 1 34 HELIX 24 AC6 PHE A 437 ARG A 442 1 6 HELIX 25 AC7 ASN A 443 LEU A 460 1 18 HELIX 26 AC8 ALA A 461 THR A 464 5 4 HELIX 27 AC9 GLY A 466 ALA A 478 1 13 HELIX 28 AD1 TYR A 481 TRP A 496 1 16 HELIX 29 AD2 GLY A 499 GLY A 512 1 14 HELIX 30 AD3 GLY A 516 PHE A 525 1 10 HELIX 31 AD4 PHE A 525 GLY A 541 1 17 HELIX 32 AD5 PRO A 553 VAL A 569 1 17 HELIX 33 AD6 VAL A 569 LEU A 580 1 12 HELIX 34 AD7 SER A 585 THR A 595 1 11 HELIX 35 AD8 GLU L 80 ALA L 84 5 5 HELIX 36 AD9 SER L 122 GLY L 129 1 8 HELIX 37 AE1 LYS L 184 ARG L 189 1 6 HELIX 38 AE2 THR H 28 TYR H 32 5 5 HELIX 39 AE3 SER H 192 GLN H 197 1 6 HELIX 40 AE4 PRO H 206 SER H 209 5 4 SHEET 1 AA1 2 CYS A 157 ARG A 158 0 SHEET 2 AA1 2 GLN A 209 SER A 210 1 O GLN A 209 N ARG A 158 SHEET 1 AA2 2 THR A 546 TYR A 547 0 SHEET 2 AA2 2 TYR A 550 VAL A 551 -1 O TYR A 550 N TYR A 547 SHEET 1 AA3 3 LEU L 4 SER L 7 0 SHEET 2 AA3 3 VAL L 19 VAL L 29 -1 O ARG L 24 N THR L 5 SHEET 3 AA3 3 PHE L 63 ILE L 76 -1 O TYR L 72 N CYS L 23 SHEET 1 AA4 6 ILE L 10 THR L 13 0 SHEET 2 AA4 6 THR L 103 MET L 107 1 O GLU L 106 N THR L 13 SHEET 3 AA4 6 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AA4 6 LEU L 34 GLN L 39 -1 N HIS L 35 O GLN L 90 SHEET 5 AA4 6 LYS L 46 TYR L 50 -1 O TRP L 48 N TRP L 36 SHEET 6 AA4 6 ASN L 54 LEU L 55 -1 O ASN L 54 N TYR L 50 SHEET 1 AA5 4 ILE L 10 THR L 13 0 SHEET 2 AA5 4 THR L 103 MET L 107 1 O GLU L 106 N THR L 13 SHEET 3 AA5 4 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AA5 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AA6 4 THR L 115 PHE L 119 0 SHEET 2 AA6 4 GLY L 130 PHE L 140 -1 O PHE L 136 N SER L 117 SHEET 3 AA6 4 TYR L 174 THR L 183 -1 O LEU L 182 N ALA L 131 SHEET 4 AA6 4 SER L 163 TRP L 164 -1 N SER L 163 O SER L 177 SHEET 1 AA7 4 SER L 154 ARG L 156 0 SHEET 2 AA7 4 ASN L 146 ILE L 151 -1 N TRP L 149 O ARG L 156 SHEET 3 AA7 4 SER L 192 THR L 198 -1 O THR L 194 N LYS L 150 SHEET 4 AA7 4 ILE L 206 ASN L 211 -1 O PHE L 210 N TYR L 193 SHEET 1 AA8 4 GLN H 3 SER H 7 0 SHEET 2 AA8 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA8 4 ILE H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA8 4 THR H 69 ASP H 73 -1 N THR H 69 O GLU H 82 SHEET 1 AA9 6 GLY H 10 VAL H 12 0 SHEET 2 AA9 6 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 AA9 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 113 SHEET 4 AA9 6 MET H 34 GLN H 39 -1 N SER H 35 O ALA H 97 SHEET 5 AA9 6 LEU H 45 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA9 6 ILE H 58 TYR H 60 -1 O TYR H 59 N GLU H 50 SHEET 1 AB1 4 GLY H 10 VAL H 12 0 SHEET 2 AB1 4 THR H 113 VAL H 117 1 O THR H 116 N VAL H 12 SHEET 3 AB1 4 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 113 SHEET 4 AB1 4 TYR H 108 TRP H 109 -1 O TYR H 108 N ARG H 98 SHEET 1 AB2 4 SER H 126 LEU H 130 0 SHEET 2 AB2 4 SER H 141 TYR H 151 -1 O LEU H 147 N TYR H 128 SHEET 3 AB2 4 TYR H 181 THR H 190 -1 O LEU H 183 N VAL H 148 SHEET 4 AB2 4 VAL H 169 THR H 171 -1 N HIS H 170 O SER H 186 SHEET 1 AB3 4 SER H 126 LEU H 130 0 SHEET 2 AB3 4 SER H 141 TYR H 151 -1 O LEU H 147 N TYR H 128 SHEET 3 AB3 4 TYR H 181 THR H 190 -1 O LEU H 183 N VAL H 148 SHEET 4 AB3 4 VAL H 175 LEU H 176 -1 N VAL H 175 O THR H 182 SHEET 1 AB4 3 THR H 157 TRP H 160 0 SHEET 2 AB4 3 THR H 200 HIS H 205 -1 O ASN H 202 N THR H 159 SHEET 3 AB4 3 THR H 210 LYS H 215 -1 O LYS H 214 N CYS H 201 SSBOND 1 CYS A 148 CYS A 157 1555 1555 2.05 SSBOND 2 CYS L 23 CYS L 89 1555 1555 2.03 SSBOND 3 CYS L 135 CYS L 195 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 5 CYS H 146 CYS H 201 1555 1555 2.03 LINK O GLY A 42 NA NA A 602 1555 1555 2.34 LINK O ALA A 44 NA NA A 601 1555 1555 2.45 LINK O VAL A 45 NA NA A 602 1555 1555 2.35 LINK OD1 ASN A 49 NA NA A 601 1555 1555 2.77 LINK O SER A 320 NA NA A 601 1555 1555 2.52 LINK OG SER A 320 NA NA A 601 1555 1555 2.47 LINK OD1 ASN A 352 NA NA A 601 1555 1555 3.10 LINK O LEU A 417 NA NA A 602 1555 1555 2.33 LINK OD1 ASP A 420 NA NA A 602 1555 1555 2.39 LINK OG SER A 421 NA NA A 602 1555 1555 2.40 LINK NA NA A 601 O HOH A 708 1555 1555 2.45 SITE 1 AC1 6 ALA A 44 ASP A 46 ASN A 49 SER A 320 SITE 2 AC1 6 ASN A 352 HOH A 708 SITE 1 AC2 5 GLY A 42 VAL A 45 LEU A 417 ASP A 420 SITE 2 AC2 5 SER A 421 SITE 1 AC3 4 TYR A 69 GLN A 316 SER A 320 SER A 356 SITE 1 AC4 5 LEU A 37 LEU A 270 TYR A 273 LEU A 277 SITE 2 AC4 5 ILE A 351 SITE 1 AC5 9 PHE A 43 ALA A 44 ASP A 46 VAL A 120 SITE 2 AC5 9 TYR A 123 PHE A 319 SER A 320 SER A 421 SITE 3 AC5 9 HOH A 708 CRYST1 96.901 133.667 161.682 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010320 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006185 0.00000