HEADER TRANSPORT PROTEIN 16-JAN-15 4XNW TITLE THE HUMAN P2Y1 RECEPTOR IN COMPLEX WITH MRS2500 COMPND MOL_ID: 1; COMPND 2 MOLECULE: P2Y PURINOCEPTOR 1,RUBREDOXIN,P2Y PURINOCEPTOR 1; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: P2Y1, ATP RECEPTOR, PURINERGIC RECEPTOR, RD; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: CHIMERA PROTEIN OF P2Y PURINOCEPTOR 1 (P2RY1_HUMA) COMPND 8 WITH RUBREDOXIN (RUBR_CLOPA) INSERTED INTO ICL3 DOMAIN BETWEEN COMPND 9 RESIDUES 247LYS AND 253PRO, AND REPLACED RESIDUES 248ASN TO 252SER. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, CLOSTRIDIUM PASTEURIANUM; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 1501; SOURCE 5 GENE: P2RY1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7106; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS HUMAN P2Y1 RECEPTOR, G PROTEIN COUPLED RECEPTOR, PLATELET ACTIVATION, KEYWDS 2 MEMBRANE PROTEIN, TRANSPORT PROTEIN, PSI-BIOLOGY, STRUCTURAL KEYWDS 3 GENOMICS, GPCR NETWORK, GPCR EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHANG,Z.GAO,K.JACOBSON,G.W.HAN,R.STEVENS,Q.ZHAO,B.WU,GPCR NETWORK AUTHOR 2 (GPCR) REVDAT 4 05-FEB-20 4XNW 1 SOURCE KEYWDS AUTHOR JRNL REVDAT 4 2 1 REMARK REVDAT 3 29-APR-15 4XNW 1 KEYWDS REVDAT 2 22-APR-15 4XNW 1 JRNL REVDAT 1 01-APR-15 4XNW 0 JRNL AUTH D.ZHANG,Z.G.GAO,K.ZHANG,E.KISELEV,S.CRANE,J.WANG,S.PAOLETTA, JRNL AUTH 2 C.YI,L.MA,W.ZHANG,G.W.HAN,H.LIU,V.CHEREZOV,V.KATRITCH, JRNL AUTH 3 H.JIANG,R.C.STEVENS,K.A.JACOBSON,Q.ZHAO,B.WU JRNL TITL TWO DISPARATE LIGAND-BINDING SITES IN THE HUMAN P2Y1 JRNL TITL 2 RECEPTOR JRNL REF NATURE V. 520 317 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 25822790 JRNL DOI 10.1038/NATURE14287 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 19283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1027 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1370 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5569 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.03000 REMARK 3 B22 (A**2) : 8.83000 REMARK 3 B33 (A**2) : -21.86000 REMARK 3 B12 (A**2) : 4.64000 REMARK 3 B13 (A**2) : 0.66000 REMARK 3 B23 (A**2) : -3.55000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5794 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5520 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7902 ; 1.331 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12641 ; 0.987 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 694 ; 5.330 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;34.362 ;22.345 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 928 ;16.587 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.533 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 901 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6342 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1395 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 38 333 C 38 333 16976 0.120 0.050 REMARK 3 2 A 1001 1054 C 1001 1054 2684 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XNW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000205954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20471 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400 SODIUM CITRATE HEPES, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 TRP A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 PRO A 10 REMARK 465 ASN A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 ASP A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 PHE A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 TRP A 25 REMARK 465 GLY A 26 REMARK 465 ASN A 27 REMARK 465 SER A 28 REMARK 465 THR A 29 REMARK 465 VAL A 30 REMARK 465 ALA A 31 REMARK 465 SER A 32 REMARK 465 THR A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 VAL A 36 REMARK 465 SER A 37 REMARK 465 LEU A 335 REMARK 465 SER A 336 REMARK 465 ARG A 337 REMARK 465 ALA A 338 REMARK 465 THR A 339 REMARK 465 ARG A 340 REMARK 465 LYS A 341 REMARK 465 ALA A 342 REMARK 465 SER A 343 REMARK 465 ARG A 344 REMARK 465 ARG A 345 REMARK 465 SER A 346 REMARK 465 GLU A 347 REMARK 465 ALA A 348 REMARK 465 ASN A 349 REMARK 465 LEU A 350 REMARK 465 GLN A 351 REMARK 465 SER A 352 REMARK 465 LYS A 353 REMARK 465 SER A 354 REMARK 465 GLU A 355 REMARK 465 ASP A 356 REMARK 465 MET A 357 REMARK 465 THR A 358 REMARK 465 LEU A 359 REMARK 465 ASN A 360 REMARK 465 ILE A 361 REMARK 465 LEU A 362 REMARK 465 PRO A 363 REMARK 465 GLU A 364 REMARK 465 PHE A 365 REMARK 465 LYS A 366 REMARK 465 GLN A 367 REMARK 465 ASN A 368 REMARK 465 GLY A 369 REMARK 465 ASP A 370 REMARK 465 THR A 371 REMARK 465 SER A 372 REMARK 465 LEU A 373 REMARK 465 THR C 2 REMARK 465 GLU C 3 REMARK 465 VAL C 4 REMARK 465 LEU C 5 REMARK 465 TRP C 6 REMARK 465 PRO C 7 REMARK 465 ALA C 8 REMARK 465 VAL C 9 REMARK 465 PRO C 10 REMARK 465 ASN C 11 REMARK 465 GLY C 12 REMARK 465 THR C 13 REMARK 465 ASP C 14 REMARK 465 ALA C 15 REMARK 465 ALA C 16 REMARK 465 PHE C 17 REMARK 465 LEU C 18 REMARK 465 ALA C 19 REMARK 465 GLY C 20 REMARK 465 PRO C 21 REMARK 465 GLY C 22 REMARK 465 SER C 23 REMARK 465 SER C 24 REMARK 465 TRP C 25 REMARK 465 GLY C 26 REMARK 465 ASN C 27 REMARK 465 SER C 28 REMARK 465 THR C 29 REMARK 465 VAL C 30 REMARK 465 ALA C 31 REMARK 465 SER C 32 REMARK 465 THR C 33 REMARK 465 ALA C 34 REMARK 465 ALA C 35 REMARK 465 VAL C 36 REMARK 465 SER C 37 REMARK 465 THR C 339 REMARK 465 ARG C 340 REMARK 465 LYS C 341 REMARK 465 ALA C 342 REMARK 465 SER C 343 REMARK 465 ARG C 344 REMARK 465 ARG C 345 REMARK 465 SER C 346 REMARK 465 GLU C 347 REMARK 465 ALA C 348 REMARK 465 ASN C 349 REMARK 465 LEU C 350 REMARK 465 GLN C 351 REMARK 465 SER C 352 REMARK 465 LYS C 353 REMARK 465 SER C 354 REMARK 465 GLU C 355 REMARK 465 ASP C 356 REMARK 465 MET C 357 REMARK 465 THR C 358 REMARK 465 LEU C 359 REMARK 465 ASN C 360 REMARK 465 ILE C 361 REMARK 465 LEU C 362 REMARK 465 PRO C 363 REMARK 465 GLU C 364 REMARK 465 PHE C 365 REMARK 465 LYS C 366 REMARK 465 GLN C 367 REMARK 465 ASN C 368 REMARK 465 GLY C 369 REMARK 465 ASP C 370 REMARK 465 THR C 371 REMARK 465 SER C 372 REMARK 465 LEU C 373 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 334 CG CD NE CZ NH1 NH2 REMARK 470 SER C 39 OG REMARK 470 PHE C 78 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 81 CG CD CE NZ REMARK 470 ARG C 334 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 92.85 -65.56 REMARK 500 ASN A 113 34.00 -88.89 REMARK 500 LEU A 160 -57.33 -28.31 REMARK 500 ASN A 197 3.55 -65.49 REMARK 500 THR A 205 -95.54 -108.49 REMARK 500 PHE A 226 -59.05 -132.03 REMARK 500 LEU A 288 -64.28 -104.04 REMARK 500 PHE A 290 41.27 -108.73 REMARK 500 PHE A 331 -72.00 -33.94 REMARK 500 HIS C 79 14.49 -146.85 REMARK 500 ASN C 113 33.87 -89.22 REMARK 500 LEU C 160 -58.86 -29.23 REMARK 500 ASN C 197 3.16 -64.66 REMARK 500 THR C 205 -97.70 -108.75 REMARK 500 PHE C 226 -60.45 -132.40 REMARK 500 LEU C 288 -64.76 -104.98 REMARK 500 PHE C 290 40.71 -107.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1006 SG REMARK 620 2 CYS A1009 SG 116.5 REMARK 620 3 CYS A1039 SG 103.0 105.3 REMARK 620 4 CYS A1042 SG 109.7 108.3 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1006 SG REMARK 620 2 CYS C1039 SG 90.3 REMARK 620 3 CYS C1042 SG 105.0 105.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2ID A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2ID C 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XNV RELATED DB: PDB REMARK 900 RELATED ID: GPCR-86 RELATED DB: TARGETTRACK DBREF 4XNW A 2 247 UNP P47900 P2RY1_HUMAN 2 247 DBREF 4XNW A 1001 1054 UNP P00268 RUBR_CLOPA 1 54 DBREF 4XNW A 253 373 UNP P47900 P2RY1_HUMAN 253 373 DBREF 4XNW C 2 247 UNP P47900 P2RY1_HUMAN 2 247 DBREF 4XNW C 1001 1054 UNP P00268 RUBR_CLOPA 1 54 DBREF 4XNW C 253 373 UNP P47900 P2RY1_HUMAN 253 373 SEQADV 4XNW ASN A 320 UNP P47900 ASP 320 ENGINEERED MUTATION SEQADV 4XNW ASN C 320 UNP P47900 ASP 320 ENGINEERED MUTATION SEQRES 1 A 421 THR GLU VAL LEU TRP PRO ALA VAL PRO ASN GLY THR ASP SEQRES 2 A 421 ALA ALA PHE LEU ALA GLY PRO GLY SER SER TRP GLY ASN SEQRES 3 A 421 SER THR VAL ALA SER THR ALA ALA VAL SER SER SER PHE SEQRES 4 A 421 LYS CYS ALA LEU THR LYS THR GLY PHE GLN PHE TYR TYR SEQRES 5 A 421 LEU PRO ALA VAL TYR ILE LEU VAL PHE ILE ILE GLY PHE SEQRES 6 A 421 LEU GLY ASN SER VAL ALA ILE TRP MET PHE VAL PHE HIS SEQRES 7 A 421 MET LYS PRO TRP SER GLY ILE SER VAL TYR MET PHE ASN SEQRES 8 A 421 LEU ALA LEU ALA ASP PHE LEU TYR VAL LEU THR LEU PRO SEQRES 9 A 421 ALA LEU ILE PHE TYR TYR PHE ASN LYS THR ASP TRP ILE SEQRES 10 A 421 PHE GLY ASP ALA MET CYS LYS LEU GLN ARG PHE ILE PHE SEQRES 11 A 421 HIS VAL ASN LEU TYR GLY SER ILE LEU PHE LEU THR CYS SEQRES 12 A 421 ILE SER ALA HIS ARG TYR SER GLY VAL VAL TYR PRO LEU SEQRES 13 A 421 LYS SER LEU GLY ARG LEU LYS LYS LYS ASN ALA ILE CYS SEQRES 14 A 421 ILE SER VAL LEU VAL TRP LEU ILE VAL VAL VAL ALA ILE SEQRES 15 A 421 SER PRO ILE LEU PHE TYR SER GLY THR GLY VAL ARG LYS SEQRES 16 A 421 ASN LYS THR ILE THR CYS TYR ASP THR THR SER ASP GLU SEQRES 17 A 421 TYR LEU ARG SER TYR PHE ILE TYR SER MET CYS THR THR SEQRES 18 A 421 VAL ALA MET PHE CYS VAL PRO LEU VAL LEU ILE LEU GLY SEQRES 19 A 421 CYS TYR GLY LEU ILE VAL ARG ALA LEU ILE TYR LYS MET SEQRES 20 A 421 LYS LYS TYR THR CYS THR VAL CYS GLY TYR ILE TYR ASN SEQRES 21 A 421 PRO GLU ASP GLY ASP PRO ASP ASN GLY VAL ASN PRO GLY SEQRES 22 A 421 THR ASP PHE LYS ASP ILE PRO ASP ASP TRP VAL CYS PRO SEQRES 23 A 421 LEU CYS GLY VAL GLY LYS ASP GLN PHE GLU GLU VAL GLU SEQRES 24 A 421 GLU PRO LEU ARG ARG LYS SER ILE TYR LEU VAL ILE ILE SEQRES 25 A 421 VAL LEU THR VAL PHE ALA VAL SER TYR ILE PRO PHE HIS SEQRES 26 A 421 VAL MET LYS THR MET ASN LEU ARG ALA ARG LEU ASP PHE SEQRES 27 A 421 GLN THR PRO ALA MET CYS ALA PHE ASN ASP ARG VAL TYR SEQRES 28 A 421 ALA THR TYR GLN VAL THR ARG GLY LEU ALA SER LEU ASN SEQRES 29 A 421 SER CYS VAL ASN PRO ILE LEU TYR PHE LEU ALA GLY ASP SEQRES 30 A 421 THR PHE ARG ARG ARG LEU SER ARG ALA THR ARG LYS ALA SEQRES 31 A 421 SER ARG ARG SER GLU ALA ASN LEU GLN SER LYS SER GLU SEQRES 32 A 421 ASP MET THR LEU ASN ILE LEU PRO GLU PHE LYS GLN ASN SEQRES 33 A 421 GLY ASP THR SER LEU SEQRES 1 C 421 THR GLU VAL LEU TRP PRO ALA VAL PRO ASN GLY THR ASP SEQRES 2 C 421 ALA ALA PHE LEU ALA GLY PRO GLY SER SER TRP GLY ASN SEQRES 3 C 421 SER THR VAL ALA SER THR ALA ALA VAL SER SER SER PHE SEQRES 4 C 421 LYS CYS ALA LEU THR LYS THR GLY PHE GLN PHE TYR TYR SEQRES 5 C 421 LEU PRO ALA VAL TYR ILE LEU VAL PHE ILE ILE GLY PHE SEQRES 6 C 421 LEU GLY ASN SER VAL ALA ILE TRP MET PHE VAL PHE HIS SEQRES 7 C 421 MET LYS PRO TRP SER GLY ILE SER VAL TYR MET PHE ASN SEQRES 8 C 421 LEU ALA LEU ALA ASP PHE LEU TYR VAL LEU THR LEU PRO SEQRES 9 C 421 ALA LEU ILE PHE TYR TYR PHE ASN LYS THR ASP TRP ILE SEQRES 10 C 421 PHE GLY ASP ALA MET CYS LYS LEU GLN ARG PHE ILE PHE SEQRES 11 C 421 HIS VAL ASN LEU TYR GLY SER ILE LEU PHE LEU THR CYS SEQRES 12 C 421 ILE SER ALA HIS ARG TYR SER GLY VAL VAL TYR PRO LEU SEQRES 13 C 421 LYS SER LEU GLY ARG LEU LYS LYS LYS ASN ALA ILE CYS SEQRES 14 C 421 ILE SER VAL LEU VAL TRP LEU ILE VAL VAL VAL ALA ILE SEQRES 15 C 421 SER PRO ILE LEU PHE TYR SER GLY THR GLY VAL ARG LYS SEQRES 16 C 421 ASN LYS THR ILE THR CYS TYR ASP THR THR SER ASP GLU SEQRES 17 C 421 TYR LEU ARG SER TYR PHE ILE TYR SER MET CYS THR THR SEQRES 18 C 421 VAL ALA MET PHE CYS VAL PRO LEU VAL LEU ILE LEU GLY SEQRES 19 C 421 CYS TYR GLY LEU ILE VAL ARG ALA LEU ILE TYR LYS MET SEQRES 20 C 421 LYS LYS TYR THR CYS THR VAL CYS GLY TYR ILE TYR ASN SEQRES 21 C 421 PRO GLU ASP GLY ASP PRO ASP ASN GLY VAL ASN PRO GLY SEQRES 22 C 421 THR ASP PHE LYS ASP ILE PRO ASP ASP TRP VAL CYS PRO SEQRES 23 C 421 LEU CYS GLY VAL GLY LYS ASP GLN PHE GLU GLU VAL GLU SEQRES 24 C 421 GLU PRO LEU ARG ARG LYS SER ILE TYR LEU VAL ILE ILE SEQRES 25 C 421 VAL LEU THR VAL PHE ALA VAL SER TYR ILE PRO PHE HIS SEQRES 26 C 421 VAL MET LYS THR MET ASN LEU ARG ALA ARG LEU ASP PHE SEQRES 27 C 421 GLN THR PRO ALA MET CYS ALA PHE ASN ASP ARG VAL TYR SEQRES 28 C 421 ALA THR TYR GLN VAL THR ARG GLY LEU ALA SER LEU ASN SEQRES 29 C 421 SER CYS VAL ASN PRO ILE LEU TYR PHE LEU ALA GLY ASP SEQRES 30 C 421 THR PHE ARG ARG ARG LEU SER ARG ALA THR ARG LYS ALA SEQRES 31 C 421 SER ARG ARG SER GLU ALA ASN LEU GLN SER LYS SER GLU SEQRES 32 C 421 ASP MET THR LEU ASN ILE LEU PRO GLU PHE LYS GLN ASN SEQRES 33 C 421 GLY ASP THR SER LEU HET 2ID A1101 29 HET ZN A1102 1 HET 2ID C1101 29 HET ZN C1102 1 HETNAM 2ID [(1R,2S,4S,5S)-4-[2-IODO-6-(METHYLAMINO)-9H-PURIN-9- HETNAM 2 2ID YL]-2-(PHOSPHONOOXY)BICYCLO[3.1.0]HEX-1-YL]METHYL HETNAM 3 2ID DIHYDROGEN PHOSPHATE HETNAM ZN ZINC ION FORMUL 3 2ID 2(C13 H18 I N5 O8 P2) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *10(H2 O) HELIX 1 AA1 THR A 47 TYR A 52 1 6 HELIX 2 AA2 TYR A 52 MET A 80 1 29 HELIX 3 AA3 SER A 84 LEU A 102 1 19 HELIX 4 AA4 THR A 103 ASN A 113 1 11 HELIX 5 AA5 PHE A 119 TYR A 155 1 37 HELIX 6 AA6 SER A 159 LEU A 163 5 5 HELIX 7 AA7 LYS A 164 SER A 184 1 21 HELIX 8 AA8 SER A 184 SER A 190 1 7 HELIX 9 AA9 SER A 207 GLU A 209 5 3 HELIX 10 AB1 TYR A 210 PHE A 226 1 17 HELIX 11 AB2 PHE A 226 LYS A 247 1 22 HELIX 12 AB3 ASP A 1019 GLY A 1023 5 5 HELIX 13 AB4 ASP A 1029 ILE A 1033 5 5 HELIX 14 AB5 GLY A 1045 ASP A 1047 5 3 HELIX 15 AB6 GLU A 1054 SER A 272 1 21 HELIX 16 AB7 TYR A 273 PHE A 290 1 18 HELIX 17 AB8 MET A 295 ALA A 313 1 19 HELIX 18 AB9 LEU A 315 ALA A 327 1 13 HELIX 19 AC1 GLY C 48 MET C 80 1 33 HELIX 20 AC2 SER C 84 LEU C 102 1 19 HELIX 21 AC3 THR C 103 ASN C 113 1 11 HELIX 22 AC4 PHE C 119 TYR C 155 1 37 HELIX 23 AC5 SER C 159 LEU C 163 5 5 HELIX 24 AC6 LYS C 164 SER C 184 1 21 HELIX 25 AC7 SER C 184 SER C 190 1 7 HELIX 26 AC8 SER C 207 GLU C 209 5 3 HELIX 27 AC9 TYR C 210 PHE C 226 1 17 HELIX 28 AD1 PHE C 226 LYS C 247 1 22 HELIX 29 AD2 ASP C 1019 GLY C 1023 5 5 HELIX 30 AD3 ASP C 1029 ILE C 1033 5 5 HELIX 31 AD4 GLY C 1045 ASP C 1047 5 3 HELIX 32 AD5 GLU C 1054 SER C 272 1 21 HELIX 33 AD6 TYR C 273 PHE C 290 1 18 HELIX 34 AD7 MET C 295 ALA C 313 1 19 HELIX 35 AD8 LEU C 315 ALA C 327 1 13 SHEET 1 AA1 2 GLY A 191 VAL A 194 0 SHEET 2 AA1 2 ILE A 200 TYR A 203 -1 O THR A 201 N GLY A 193 SHEET 1 AA2 3 ILE A1012 TYR A1013 0 SHEET 2 AA2 3 TYR A1004 CYS A1006 -1 N TYR A1004 O TYR A1013 SHEET 3 AA2 3 PHE A1049 GLU A1051 -1 O GLU A1050 N THR A1005 SHEET 1 AA3 2 GLY C 191 VAL C 194 0 SHEET 2 AA3 2 ILE C 200 TYR C 203 -1 O THR C 201 N GLY C 193 SHEET 1 AA4 3 ILE C1012 TYR C1013 0 SHEET 2 AA4 3 TYR C1004 CYS C1006 -1 N TYR C1004 O TYR C1013 SHEET 3 AA4 3 PHE C1049 GLU C1051 -1 O GLU C1050 N THR C1005 SSBOND 1 CYS A 42 CYS A 296 1555 1555 2.06 SSBOND 2 CYS A 124 CYS A 202 1555 1555 2.06 SSBOND 3 CYS C 42 CYS C 296 1555 1555 2.07 SSBOND 4 CYS C 124 CYS C 202 1555 1555 2.07 LINK SG CYS A1006 ZN ZN A1102 1555 1555 2.30 LINK SG CYS A1009 ZN ZN A1102 1555 1555 2.16 LINK SG CYS A1039 ZN ZN A1102 1555 1555 2.11 LINK SG CYS A1042 ZN ZN A1102 1555 1555 2.27 LINK SG CYS C1006 ZN ZN C1102 1555 1555 2.48 LINK SG CYS C1039 ZN ZN C1102 1555 1555 2.40 LINK SG CYS C1042 ZN ZN C1102 1555 1555 2.24 CISPEP 1 LYS A 81 PRO A 82 0 19.71 CISPEP 2 LYS C 81 PRO C 82 0 -1.08 SITE 1 AC1 19 CYS A 42 LEU A 44 LYS A 46 TYR A 110 SITE 2 AC1 19 ARG A 195 THR A 201 TYR A 203 ASP A 204 SITE 3 AC1 19 THR A 205 ASN A 283 ALA A 286 ARG A 287 SITE 4 AC1 19 GLN A 291 ASN A 299 TYR A 303 TYR A 306 SITE 5 AC1 19 ARG A 310 HOH A1202 HOH A1205 SITE 1 AC2 4 CYS A1006 CYS A1009 CYS A1039 CYS A1042 SITE 1 AC3 14 LYS C 46 TYR C 110 ARG C 195 THR C 201 SITE 2 AC3 14 ASP C 204 THR C 205 ASN C 283 ALA C 286 SITE 3 AC3 14 ARG C 287 GLN C 291 ASN C 299 TYR C 303 SITE 4 AC3 14 TYR C 306 ARG C 310 SITE 1 AC4 4 CYS C1006 CYS C1009 CYS C1039 CYS C1042 CRYST1 40.670 64.970 77.570 101.82 95.70 100.85 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024588 0.004713 0.003628 0.00000 SCALE2 0.000000 0.015672 0.003682 0.00000 SCALE3 0.000000 0.000000 0.013308 0.00000