HEADER IMMUNE SYSTEM 16-JAN-15 4XNY TITLE CRYSTAL STRUCTURE OF BROADLY AND POTENTLY NEUTRALIZING ANTIBODY VRC08C TITLE 2 IN COMPLEX WITH HIV-1 CLADE A STRAIN Q842.D12 GP120 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160,ENVELOPE GLYCOPROTEIN GP160, COMPND 3 ENVELOPE GLYCOPROTEIN GP160; COMPND 4 CHAIN: G; COMPND 5 FRAGMENT: UNP RESIDUES 43-122, 195-297, 319-481; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HEAVY CHAIN OF ANTIBODY VRC08C; COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: LIGHT CHAIN OF ANTIBODY VRC08C; COMPND 13 CHAIN: L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: Q842.D12; SOURCE 5 GENE: ENV; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 GNTI-; SOURCE 10 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3022; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 25 ORGANISM_COMMON: HUMAN; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 28 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 30 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 31 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 32 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS ANTIBODY, HIV-1, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.ZHOU,S.SRIVATSAN,P.D.KWONG REVDAT 4 27-SEP-23 4XNY 1 HETSYN REVDAT 3 29-JUL-20 4XNY 1 COMPND SOURCE REMARK HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 06-MAY-15 4XNY 1 JRNL REVDAT 1 29-APR-15 4XNY 0 JRNL AUTH X.WU,Z.ZHANG,C.A.SCHRAMM,M.G.JOYCE,Y.DO KWON,T.ZHOU,Z.SHENG, JRNL AUTH 2 B.ZHANG,S.O'DELL,K.MCKEE,I.S.GEORGIEV,G.Y.CHUANG,N.S.LONGO, JRNL AUTH 3 R.M.LYNCH,K.O.SAUNDERS,C.SOTO,S.SRIVATSAN,Y.YANG,R.T.BAILER, JRNL AUTH 4 M.K.LOUDER,J.C.MULLIKIN,M.CONNORS,P.D.KWONG,J.R.MASCOLA, JRNL AUTH 5 L.SHAPIRO JRNL TITL MATURATION AND DIVERSITY OF THE VRC01-ANTIBODY LINEAGE OVER JRNL TITL 2 15 YEARS OF CHRONIC HIV-1 INFECTION. JRNL REF CELL V. 161 470 2015 JRNL REFN ISSN 1097-4172 JRNL PMID 25865483 JRNL DOI 10.1016/J.CELL.2015.03.004 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1702 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 44406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6950 - 5.7782 0.98 2692 157 0.1519 0.1921 REMARK 3 2 5.7782 - 4.5900 1.00 2683 158 0.1342 0.1589 REMARK 3 3 4.5900 - 4.0109 1.00 2657 147 0.1433 0.1753 REMARK 3 4 4.0109 - 3.6446 1.00 2683 140 0.1629 0.2287 REMARK 3 5 3.6446 - 3.3837 1.00 2645 143 0.1835 0.1929 REMARK 3 6 3.3837 - 3.1843 1.00 2688 110 0.1972 0.2490 REMARK 3 7 3.1843 - 3.0250 1.00 2636 142 0.2085 0.2456 REMARK 3 8 3.0250 - 2.8934 1.00 2665 130 0.2200 0.2565 REMARK 3 9 2.8934 - 2.7820 1.00 2673 129 0.2251 0.2620 REMARK 3 10 2.7820 - 2.6861 1.00 2634 132 0.2357 0.2575 REMARK 3 11 2.6861 - 2.6021 0.99 2652 151 0.2372 0.2830 REMARK 3 12 2.6021 - 2.5278 0.99 2585 156 0.2493 0.2999 REMARK 3 13 2.5278 - 2.4612 1.00 2650 136 0.2632 0.2733 REMARK 3 14 2.4612 - 2.4012 0.99 2644 141 0.2770 0.3344 REMARK 3 15 2.4012 - 2.3466 0.98 2618 129 0.2805 0.2882 REMARK 3 16 2.3466 - 2.2967 0.92 2360 140 0.2820 0.3434 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6340 REMARK 3 ANGLE : 0.833 8613 REMARK 3 CHIRALITY : 0.052 988 REMARK 3 PLANARITY : 0.003 1104 REMARK 3 DIHEDRAL : 11.901 2282 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 45 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0030 52.1397 -33.2666 REMARK 3 T TENSOR REMARK 3 T11: 0.4125 T22: 0.5934 REMARK 3 T33: 0.4321 T12: -0.1624 REMARK 3 T13: -0.0954 T23: 0.1088 REMARK 3 L TENSOR REMARK 3 L11: 6.1048 L22: 7.3062 REMARK 3 L33: 5.3189 L12: -2.6306 REMARK 3 L13: -3.8714 L23: 4.1175 REMARK 3 S TENSOR REMARK 3 S11: -0.3776 S12: 0.3096 S13: -0.1057 REMARK 3 S21: -0.3688 S22: 0.6366 S23: 0.1507 REMARK 3 S31: 0.0652 S32: -0.0247 S33: -0.1772 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 77 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8329 42.0893 -30.4548 REMARK 3 T TENSOR REMARK 3 T11: 0.4760 T22: 0.6490 REMARK 3 T33: 0.4650 T12: -0.0560 REMARK 3 T13: -0.0446 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 2.1874 L22: 6.4659 REMARK 3 L33: 2.5647 L12: 0.3143 REMARK 3 L13: 0.7004 L23: 1.4745 REMARK 3 S TENSOR REMARK 3 S11: -0.1501 S12: 0.4937 S13: -0.2305 REMARK 3 S21: -0.5557 S22: 0.4917 S23: -0.1680 REMARK 3 S31: 0.2966 S32: 0.3955 S33: -0.3722 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 116 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1291 65.4953 -18.9499 REMARK 3 T TENSOR REMARK 3 T11: 0.4097 T22: 0.5439 REMARK 3 T33: 0.5921 T12: -0.0695 REMARK 3 T13: -0.0559 T23: 0.2039 REMARK 3 L TENSOR REMARK 3 L11: 0.8496 L22: 9.0030 REMARK 3 L33: 4.8634 L12: 0.4016 REMARK 3 L13: 0.3803 L23: 3.1827 REMARK 3 S TENSOR REMARK 3 S11: 0.1863 S12: 0.0821 S13: 0.4093 REMARK 3 S21: 0.2626 S22: -0.1492 S23: -0.3144 REMARK 3 S31: -0.4049 S32: 0.3417 S33: -0.0869 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 216 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9330 37.2292 -29.1558 REMARK 3 T TENSOR REMARK 3 T11: 0.5056 T22: 0.5160 REMARK 3 T33: 0.4972 T12: -0.0231 REMARK 3 T13: -0.0894 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.9830 L22: 5.1402 REMARK 3 L33: 7.1961 L12: -0.9671 REMARK 3 L13: -1.4035 L23: 2.3009 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.6103 S13: -0.5572 REMARK 3 S21: -0.3457 S22: -0.0211 S23: 0.1661 REMARK 3 S31: 0.9709 S32: -0.0052 S33: 0.0039 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 259 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5319 35.3576 -14.4473 REMARK 3 T TENSOR REMARK 3 T11: 0.4774 T22: 0.3710 REMARK 3 T33: 0.3658 T12: 0.0195 REMARK 3 T13: -0.1152 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 7.1888 L22: 3.8693 REMARK 3 L33: 1.7931 L12: -1.4781 REMARK 3 L13: -0.4259 L23: -0.1870 REMARK 3 S TENSOR REMARK 3 S11: -0.1288 S12: 0.4064 S13: -0.5583 REMARK 3 S21: -0.2399 S22: 0.1766 S23: 0.0962 REMARK 3 S31: 0.3127 S32: 0.1695 S33: -0.0643 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 284 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0637 43.6515 -5.4595 REMARK 3 T TENSOR REMARK 3 T11: 0.3586 T22: 0.3700 REMARK 3 T33: 0.3544 T12: -0.0436 REMARK 3 T13: -0.0443 T23: 0.0681 REMARK 3 L TENSOR REMARK 3 L11: 4.1548 L22: 3.3898 REMARK 3 L33: 1.5701 L12: -1.8369 REMARK 3 L13: -0.1724 L23: 1.4366 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: -0.1816 S13: -0.1569 REMARK 3 S21: 0.2731 S22: 0.1171 S23: 0.0240 REMARK 3 S31: 0.2994 S32: -0.1261 S33: -0.0596 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 386 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0642 47.9753 -0.4691 REMARK 3 T TENSOR REMARK 3 T11: 0.3974 T22: 0.4616 REMARK 3 T33: 0.4323 T12: -0.0344 REMARK 3 T13: -0.1295 T23: 0.0681 REMARK 3 L TENSOR REMARK 3 L11: 1.3893 L22: 9.8198 REMARK 3 L33: 3.5247 L12: -0.0449 REMARK 3 L13: -1.1170 L23: -3.7970 REMARK 3 S TENSOR REMARK 3 S11: 0.2336 S12: -0.5161 S13: -0.1795 REMARK 3 S21: 0.4297 S22: -0.3095 S23: -0.2772 REMARK 3 S31: 0.1050 S32: 0.2740 S33: 0.0385 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 426 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9911 55.3599 -11.6937 REMARK 3 T TENSOR REMARK 3 T11: 0.2929 T22: 0.3393 REMARK 3 T33: 0.3207 T12: -0.0189 REMARK 3 T13: -0.0411 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 3.2489 L22: 4.6293 REMARK 3 L33: 1.3661 L12: -0.8561 REMARK 3 L13: -0.5317 L23: 0.3302 REMARK 3 S TENSOR REMARK 3 S11: -0.1032 S12: 0.2351 S13: 0.3571 REMARK 3 S21: -0.0884 S22: 0.1156 S23: -0.1365 REMARK 3 S31: -0.0768 S32: -0.0337 S33: -0.0033 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 457 THROUGH 474 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1132 36.4171 -0.7313 REMARK 3 T TENSOR REMARK 3 T11: 0.4446 T22: 0.3981 REMARK 3 T33: 0.5508 T12: -0.0019 REMARK 3 T13: -0.1470 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 6.6517 L22: 5.6529 REMARK 3 L33: 6.3866 L12: 1.4241 REMARK 3 L13: -4.2001 L23: 2.0902 REMARK 3 S TENSOR REMARK 3 S11: 0.1932 S12: -1.0768 S13: -1.1218 REMARK 3 S21: 0.6661 S22: 0.3055 S23: -0.0993 REMARK 3 S31: 0.5936 S32: 0.2634 S33: -0.3750 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 475 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1930 40.8823 -27.8802 REMARK 3 T TENSOR REMARK 3 T11: 0.5041 T22: 0.5965 REMARK 3 T33: 0.4959 T12: 0.0536 REMARK 3 T13: -0.0376 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 5.0099 L22: 7.7045 REMARK 3 L33: 7.7569 L12: 1.7078 REMARK 3 L13: 1.3778 L23: 4.2206 REMARK 3 S TENSOR REMARK 3 S11: 0.1632 S12: 0.5123 S13: -0.3702 REMARK 3 S21: -0.1353 S22: 0.1972 S23: -0.4305 REMARK 3 S31: 0.4261 S32: 0.2020 S33: -0.3860 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3608 54.6451 5.2301 REMARK 3 T TENSOR REMARK 3 T11: 0.3472 T22: 0.4239 REMARK 3 T33: 0.5914 T12: 0.0953 REMARK 3 T13: -0.0248 T23: -0.0628 REMARK 3 L TENSOR REMARK 3 L11: 6.7705 L22: 4.9023 REMARK 3 L33: 7.4166 L12: -1.1451 REMARK 3 L13: -3.4091 L23: -3.3054 REMARK 3 S TENSOR REMARK 3 S11: 0.1959 S12: 0.5670 S13: 0.4672 REMARK 3 S21: -0.2787 S22: -0.5717 S23: -0.4903 REMARK 3 S31: -0.7475 S32: -0.6466 S33: 0.1750 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7420 47.7570 -1.0965 REMARK 3 T TENSOR REMARK 3 T11: 0.3363 T22: 0.3834 REMARK 3 T33: 0.3552 T12: 0.0691 REMARK 3 T13: -0.0156 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 5.7170 L22: 3.5750 REMARK 3 L33: 2.3335 L12: -1.7708 REMARK 3 L13: 1.1897 L23: 0.8958 REMARK 3 S TENSOR REMARK 3 S11: 0.1390 S12: 0.1513 S13: 0.0673 REMARK 3 S21: -0.1730 S22: -0.1239 S23: 0.2198 REMARK 3 S31: 0.0488 S32: -0.0257 S33: 0.0016 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 73 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4224 50.8218 5.4573 REMARK 3 T TENSOR REMARK 3 T11: 0.3287 T22: 0.3872 REMARK 3 T33: 0.4193 T12: 0.0402 REMARK 3 T13: -0.0196 T23: -0.0546 REMARK 3 L TENSOR REMARK 3 L11: 5.3515 L22: 4.1983 REMARK 3 L33: 4.2132 L12: -1.7710 REMARK 3 L13: 2.4154 L23: -1.8601 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: -0.3676 S13: 0.1452 REMARK 3 S21: -0.0475 S22: 0.0718 S23: -0.0813 REMARK 3 S31: 0.0682 S32: -0.2432 S33: -0.2079 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 94 THROUGH 100F) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9243 49.1801 -20.0973 REMARK 3 T TENSOR REMARK 3 T11: 0.6652 T22: 1.0786 REMARK 3 T33: 0.6472 T12: 0.1646 REMARK 3 T13: 0.0856 T23: 0.1664 REMARK 3 L TENSOR REMARK 3 L11: 4.9549 L22: 1.4797 REMARK 3 L33: 3.7988 L12: -2.3715 REMARK 3 L13: 4.4107 L23: -2.2659 REMARK 3 S TENSOR REMARK 3 S11: 0.3703 S12: 2.9598 S13: 0.0100 REMARK 3 S21: 0.2277 S22: -0.3187 S23: 0.4916 REMARK 3 S31: 0.3095 S32: 2.1480 S33: 0.0822 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 100G THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5107 44.0029 12.4507 REMARK 3 T TENSOR REMARK 3 T11: 0.2982 T22: 0.2491 REMARK 3 T33: 0.4432 T12: 0.0477 REMARK 3 T13: 0.0293 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 4.3490 L22: 2.0507 REMARK 3 L33: 4.6802 L12: -0.6033 REMARK 3 L13: 2.3665 L23: 1.1992 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: -0.0760 S13: -0.0136 REMARK 3 S21: 0.0947 S22: 0.0628 S23: -0.2336 REMARK 3 S31: -0.0602 S32: -0.0506 S33: -0.0372 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 136 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.3443 46.8380 25.2436 REMARK 3 T TENSOR REMARK 3 T11: 0.4275 T22: 0.4839 REMARK 3 T33: 0.5291 T12: 0.0539 REMARK 3 T13: -0.0995 T23: -0.0898 REMARK 3 L TENSOR REMARK 3 L11: 7.5632 L22: 2.4976 REMARK 3 L33: 4.2216 L12: -1.4977 REMARK 3 L13: 1.4061 L23: 0.2788 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: -0.3125 S13: 0.5697 REMARK 3 S21: 0.0132 S22: -0.0287 S23: -0.3812 REMARK 3 S31: -0.3298 S32: 0.2165 S33: 0.1099 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8744 27.3128 -5.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.6238 T22: 0.5067 REMARK 3 T33: 0.5920 T12: 0.2407 REMARK 3 T13: -0.1660 T23: -0.1834 REMARK 3 L TENSOR REMARK 3 L11: 4.0363 L22: 1.5788 REMARK 3 L33: 3.3473 L12: -1.8682 REMARK 3 L13: 0.4726 L23: -0.6883 REMARK 3 S TENSOR REMARK 3 S11: 0.7948 S12: 0.8373 S13: -1.1072 REMARK 3 S21: -0.3543 S22: -0.4873 S23: 0.4763 REMARK 3 S31: 0.7452 S32: 0.1659 S33: -0.2145 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 39 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2354 37.3629 -11.2451 REMARK 3 T TENSOR REMARK 3 T11: 0.6472 T22: 1.0685 REMARK 3 T33: 0.3797 T12: 0.3611 REMARK 3 T13: -0.0478 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 2.4798 L22: 5.0801 REMARK 3 L33: 9.6511 L12: -3.2513 REMARK 3 L13: -1.8819 L23: 2.7779 REMARK 3 S TENSOR REMARK 3 S11: 0.9546 S12: 1.9473 S13: 1.0660 REMARK 3 S21: -0.8325 S22: -0.5244 S23: -0.7912 REMARK 3 S31: 0.1943 S32: 0.5033 S33: -0.1078 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 62 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3947 30.3982 -6.7446 REMARK 3 T TENSOR REMARK 3 T11: 0.6423 T22: 0.6040 REMARK 3 T33: 0.4718 T12: 0.2597 REMARK 3 T13: -0.0802 T23: -0.1397 REMARK 3 L TENSOR REMARK 3 L11: 4.2004 L22: 3.1208 REMARK 3 L33: 2.6708 L12: -3.8094 REMARK 3 L13: 0.0856 L23: 0.2168 REMARK 3 S TENSOR REMARK 3 S11: 0.5908 S12: 1.3483 S13: -0.7821 REMARK 3 S21: -0.8694 S22: -0.6178 S23: 0.3139 REMARK 3 S31: 0.3783 S32: 0.2997 S33: 0.0481 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 102 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9143 34.0199 22.5396 REMARK 3 T TENSOR REMARK 3 T11: 0.4687 T22: 0.5260 REMARK 3 T33: 0.4660 T12: 0.0501 REMARK 3 T13: -0.0430 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.3532 L22: 2.0974 REMARK 3 L33: 4.3114 L12: -1.3803 REMARK 3 L13: -1.0071 L23: 0.2272 REMARK 3 S TENSOR REMARK 3 S11: -0.1525 S12: -0.3263 S13: 0.2148 REMARK 3 S21: 0.2838 S22: 0.1944 S23: -0.2644 REMARK 3 S31: -0.3805 S32: 0.1020 S33: 0.0122 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 129 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7646 29.6566 23.1787 REMARK 3 T TENSOR REMARK 3 T11: 0.4142 T22: 0.3719 REMARK 3 T33: 0.3741 T12: 0.0642 REMARK 3 T13: -0.0045 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 7.8748 L22: 4.6203 REMARK 3 L33: 4.2244 L12: -4.4870 REMARK 3 L13: -4.9855 L23: 2.5699 REMARK 3 S TENSOR REMARK 3 S11: -0.3562 S12: -0.1762 S13: -0.3449 REMARK 3 S21: 0.3822 S22: -0.0598 S23: 0.4086 REMARK 3 S31: 0.0603 S32: -0.5020 S33: 0.3462 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 151 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8256 32.3128 19.7819 REMARK 3 T TENSOR REMARK 3 T11: 0.3000 T22: 0.4273 REMARK 3 T33: 0.3656 T12: 0.0974 REMARK 3 T13: -0.0601 T23: -0.0683 REMARK 3 L TENSOR REMARK 3 L11: 7.6110 L22: 3.5391 REMARK 3 L33: 4.1703 L12: 1.4462 REMARK 3 L13: -3.0512 L23: 0.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: -0.4156 S13: 0.3794 REMARK 3 S21: 0.1350 S22: -0.0097 S23: -0.0543 REMARK 3 S31: -0.3285 S32: -0.1999 S33: -0.0068 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 175 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6662 28.9316 31.6338 REMARK 3 T TENSOR REMARK 3 T11: 0.5793 T22: 0.6643 REMARK 3 T33: 0.3920 T12: 0.1670 REMARK 3 T13: -0.0015 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.5226 L22: 2.2883 REMARK 3 L33: 3.9528 L12: -1.5265 REMARK 3 L13: -1.7074 L23: 2.3640 REMARK 3 S TENSOR REMARK 3 S11: -0.5777 S12: -0.8440 S13: -0.0784 REMARK 3 S21: 0.5828 S22: 0.2060 S23: 0.2360 REMARK 3 S31: 0.4288 S32: -0.1831 S33: 0.3195 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 205 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.4797 28.7992 37.8633 REMARK 3 T TENSOR REMARK 3 T11: 0.8227 T22: 0.9169 REMARK 3 T33: 0.5162 T12: 0.3113 REMARK 3 T13: -0.1199 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 4.2673 L22: 4.9094 REMARK 3 L33: 8.4297 L12: -0.3789 REMARK 3 L13: -4.1341 L23: 3.7288 REMARK 3 S TENSOR REMARK 3 S11: 0.1472 S12: -1.7228 S13: 0.0395 REMARK 3 S21: 0.4361 S22: 0.0579 S23: -0.4448 REMARK 3 S31: 0.6846 S32: 0.7423 S33: -0.4626 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44444 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XMP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 1500, 2% MPD, 0.1M TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.35000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.52500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.17500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL G 44 REMARK 465 ASN G 317 REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 GLY G 324 REMARK 465 HIS G 401 REMARK 465 THR G 402 REMARK 465 ALA G 403 REMARK 465 SER G 404 REMARK 465 MET G 405 REMARK 465 ASN G 406 REMARK 465 SER G 407 REMARK 465 THR G 408 REMARK 465 GLU G 409 REMARK 465 SER G 410 REMARK 465 ASN G 411 REMARK 465 CYS H 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN G 386 H1 NAG G 509 0.49 REMARK 500 ND2 ASN G 392 H1 NAG G 510 0.50 REMARK 500 ND2 ASN G 241 H1 NAG G 501 0.51 REMARK 500 ND2 ASN G 334 H1 NAG G 505 0.51 REMARK 500 ND2 ASN G 363 H1 NAG G 508 0.52 REMARK 500 ND2 ASN G 339 H1 NAG G 506 0.56 REMARK 500 ND2 ASN G 276 H1 NAG G 503 0.57 REMARK 500 HD21 ASN G 276 H1 NAG G 503 1.11 REMARK 500 HD21 ASN G 241 H1 NAG G 501 1.12 REMARK 500 HD21 ASN G 334 H1 NAG G 505 1.13 REMARK 500 HD21 ASN G 392 H1 NAG G 510 1.13 REMARK 500 HD21 ASN G 363 H1 NAG G 508 1.14 REMARK 500 HD21 ASN G 386 H1 NAG G 509 1.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN G 80 72.53 -116.78 REMARK 500 GLN G 258 -63.12 66.33 REMARK 500 ASN G 276 109.96 -165.46 REMARK 500 ASN G 392 77.53 -165.55 REMARK 500 ARG G 440 -167.78 -77.83 REMARK 500 ILE L 2 78.77 58.85 REMARK 500 LEU L 47 -61.01 -104.05 REMARK 500 ALA L 55 -161.77 -121.55 REMARK 500 ALA L 84 -177.09 -174.49 REMARK 500 PHE L 91 -126.53 54.88 REMARK 500 ASN L 138 71.52 48.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG G 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XMP RELATED DB: PDB REMARK 900 CRYSTALLIZED WITH THE SAME HIV-1 GP120 REMARK 900 RELATED ID: 3NGB RELATED DB: PDB REMARK 900 SAME CLASS OF MONOCLONAL ANTIBODIES AS VRC08C REMARK 900 RELATED ID: 4XNZ RELATED DB: PDB DBREF 4XNY G 44 123 UNP Q8JDI3 Q8JDI3_9HIV1 43 122 DBREF 4XNY G 199 317 UNP Q8JDI3 Q8JDI3_9HIV1 195 297 DBREF 4XNY G 324 492 UNP Q8JDI3 Q8JDI3_9HIV1 319 481 DBREF 4XNY H 1 216 PDB 4XNY 4XNY 1 216 DBREF 4XNY L 1 214 PDB 4XNY 4XNY 1 214 SEQADV 4XNY GLY G 124 UNP Q8JDI3 LINKER SEQADV 4XNY GLY G 198 UNP Q8JDI3 LINKER SEQADV 4XNY GLY G 318 UNP Q8JDI3 LINKER SEQADV 4XNY GLY G 319 UNP Q8JDI3 LINKER SEQADV 4XNY SER G 320 UNP Q8JDI3 LINKER SEQADV 4XNY GLY G 321 UNP Q8JDI3 LINKER SEQADV 4XNY SER G 322 UNP Q8JDI3 LINKER SEQADV 4XNY GLY G 323 UNP Q8JDI3 LINKER SEQRES 1 G 354 VAL TRP LYS GLU ALA GLU THR THR LEU PHE CYS ALA SER SEQRES 2 G 354 ASP ALA LYS ALA TYR GLU THR GLU LYS HIS ASN VAL TRP SEQRES 3 G 354 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 G 354 GLU ILE HIS LEU GLU ASN VAL THR GLU GLU PHE ASN MET SEQRES 5 G 354 TRP LYS ASN ASN MET VAL GLU GLN MET HIS THR ASP ILE SEQRES 6 G 354 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 7 G 354 LEU THR GLY GLY SER ALA ILE THR GLN ALA CYS PRO LYS SEQRES 8 G 354 VAL THR PHE GLU PRO ILE PRO ILE HIS TYR CYS ALA PRO SEQRES 9 G 354 ALA GLY PHE ALA ILE LEU LYS CYS LYS ASP GLU GLU PHE SEQRES 10 G 354 ASN GLY ILE GLY PRO CYS LYS ASN VAL SER THR VAL GLN SEQRES 11 G 354 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 G 354 LEU LEU ASN GLY SER LEU ALA GLU LYS GLU VAL LYS ILE SEQRES 13 G 354 ARG CYS GLU ASN ILE THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 G 354 VAL GLN LEU VAL ASN PRO VAL LYS ILE ASN CYS THR ARG SEQRES 15 G 354 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 G 354 GLN ALA HIS CYS ASN VAL ASN ARG THR GLU TRP ASN ASN SEQRES 17 G 354 THR LEU HIS GLN VAL VAL GLU GLN LEU ARG LYS HIS PHE SEQRES 18 G 354 ASN LYS THR ILE ASN PHE ALA ASN SER THR GLY GLY ASP SEQRES 19 G 354 LEU GLU ILE THR THR HIS SER PHE ASN CYS GLY GLY GLU SEQRES 20 G 354 PHE PHE TYR CYS ASN THR THR ASN LEU PHE ASN SER THR SEQRES 21 G 354 TRP ASN HIS THR ALA SER MET ASN SER THR GLU SER ASN SEQRES 22 G 354 ASP THR ILE ILE LEU PRO CYS ARG ILE LYS GLN ILE ILE SEQRES 23 G 354 ASN MET TRP GLN ARG VAL GLY GLN ALA MET TYR ALA PRO SEQRES 24 G 354 PRO ILE ARG GLY VAL ILE ARG CYS GLU SER ASN ILE THR SEQRES 25 G 354 GLY LEU ILE LEU THR ARG ASP GLY GLY ASN THR ASN SER SEQRES 26 G 354 THR ARG GLU THR PHE ARG PRO GLY GLY GLY ASP MET ARG SEQRES 27 G 354 ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL SEQRES 28 G 354 LYS ILE GLU SEQRES 1 H 235 GLN HIS SER GLN VAL GLN SER GLY THR GLN ILE LYS THR SEQRES 2 H 235 PRO GLY ALA SER VAL THR LEU SER CYS GLY THR SER GLY SEQRES 3 H 235 TYR ASP PHE MET GLU SER LEU ILE ASN TRP VAL ARG GLN SEQRES 4 H 235 GLU ILE GLY LYS ARG PRO GLU TRP LEU GLY TRP MET ASN SEQRES 5 H 235 PRO ARG GLY GLY GLY VAL ASN TYR ALA GLN ARG PHE GLN SEQRES 6 H 235 GLY LYS VAL THR MET THR ARG ASP VAL SER SER GLY THR SEQRES 7 H 235 ALA TYR LEU THR LEU ARG GLY LEU THR SER ASP ASP THR SEQRES 8 H 235 ALA LYS TYR TYR CYS VAL ARG GLY LYS SER CYS CYS ASN SEQRES 9 H 235 GLY ARG ARG TYR CYS ASN GLY ALA ASP CYS PHE ASN TRP SEQRES 10 H 235 ASP PHE GLU TYR TRP GLY GLN GLY THR LEU VAL ILE VAL SEQRES 11 H 235 SER PRO ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 235 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 235 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 235 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 235 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 235 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 235 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 235 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 H 235 CYS SEQRES 1 L 211 TYR ILE GLY LEU THR GLN SER PRO GLY THR LEU SER VAL SEQRES 2 L 211 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG PRO SER SEQRES 3 L 211 GLN ALA ILE SER LYS SER HIS LEU ALA TRP TYR SER GLN SEQRES 4 L 211 LYS SER GLY GLN PRO PRO ARG LEU LEU LEU THR GLY THR SEQRES 5 L 211 TYR GLU ARG ALA SER GLY VAL PRO ASP ARG PHE VAL GLY SEQRES 6 L 211 SER GLY SER GLY THR ASN TYR THR LEU THR ILE ALA SER SEQRES 7 L 211 VAL GLU ALA GLU ASP PHE ALA VAL TYR PHE CYS GLN CYS SEQRES 8 L 211 PHE GLU GLY PHE GLY GLN GLY THR LYS LEU GLU ILE LYS SEQRES 9 L 211 ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SEQRES 10 L 211 SER ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL SEQRES 11 L 211 CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL SEQRES 12 L 211 GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER SEQRES 13 L 211 GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR SEQRES 14 L 211 TYR SER LEU SER SER THR LEU THR LEU SER LYS ALA ASP SEQRES 15 L 211 TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS SEQRES 16 L 211 GLN GLY LEU SER SER PRO VAL THR LYS SER PHE ASN ARG SEQRES 17 L 211 GLY GLU CYS HET NAG G 501 28 HET NAG G 502 28 HET NAG G 503 28 HET NAG G 504 28 HET NAG G 505 28 HET NAG G 506 28 HET NAG G 507 28 HET NAG G 508 28 HET NAG G 509 28 HET NAG G 510 28 HET NAG G 511 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 11(C8 H15 N O6) FORMUL 15 HOH *205(H2 O) HELIX 1 AA1 GLU G 64 ALA G 73 1 10 HELIX 2 AA2 ASN G 98 LEU G 116 1 19 HELIX 3 AA3 ARG G 335 ARG G 350 1 16 HELIX 4 AA4 ASP G 368 THR G 373 1 6 HELIX 5 AA5 MET G 475 TYR G 484 1 10 HELIX 6 AA6 ASP H 28 SER H 32 5 5 HELIX 7 AA7 GLN H 61 GLN H 64 5 4 HELIX 8 AA8 THR H 83 THR H 87 5 5 HELIX 9 AA9 ASN H 100F CYS H 100J 5 5 HELIX 10 AB1 SER H 156 ALA H 158 5 3 HELIX 11 AB2 PRO H 185 LEU H 189 5 5 HELIX 12 AB3 SER L 29 LEU L 33 5 5 HELIX 13 AB4 GLU L 79 PHE L 83 5 5 HELIX 14 AB5 SER L 121 LYS L 126 1 6 HELIX 15 AB6 LYS L 183 HIS L 189 1 7 SHEET 1 AA1 3 CYS G 74 PRO G 76 0 SHEET 2 AA1 3 PHE G 53 SER G 56 1 N SER G 56 O VAL G 75 SHEET 3 AA1 3 HIS G 216 CYS G 218 -1 O HIS G 216 N ALA G 55 SHEET 1 AA2 4 GLU G 83 HIS G 85 0 SHEET 2 AA2 4 VAL G 242 VAL G 245 -1 O THR G 244 N ILE G 84 SHEET 3 AA2 4 PHE G 223 CYS G 228 -1 N LYS G 227 O SER G 243 SHEET 4 AA2 4 TYR G 486 LYS G 490 -1 O LYS G 487 N LEU G 226 SHEET 1 AA3 2 GLU G 91 ASN G 94 0 SHEET 2 AA3 2 ILE G 236 CYS G 239 -1 O GLY G 237 N PHE G 93 SHEET 1 AA4 4 SER G 199 THR G 202 0 SHEET 2 AA4 4 VAL G 120 THR G 123 -1 N LYS G 121 O ILE G 201 SHEET 3 AA4 4 GLN G 432 MET G 434 -1 O MET G 434 N VAL G 120 SHEET 4 AA4 4 ILE G 423 ASN G 425 -1 N ILE G 424 O ALA G 433 SHEET 1 AA5 7 LEU G 259 LEU G 261 0 SHEET 2 AA5 7 ILE G 443 ARG G 456 -1 O THR G 450 N LEU G 260 SHEET 3 AA5 7 ILE G 284 ARG G 298 -1 N VAL G 286 O LEU G 452 SHEET 4 AA5 7 GLN G 328 ASN G 334 -1 O HIS G 330 N THR G 297 SHEET 5 AA5 7 THR G 413 LYS G 421 -1 O ILE G 414 N VAL G 333 SHEET 6 AA5 7 GLU G 381 CYS G 385 -1 N PHE G 382 O LYS G 421 SHEET 7 AA5 7 HIS G 374 CYS G 378 -1 N HIS G 374 O CYS G 385 SHEET 1 AA6 6 LYS G 271 ARG G 273 0 SHEET 2 AA6 6 ILE G 284 ARG G 298 -1 O ILE G 285 N ARG G 273 SHEET 3 AA6 6 ILE G 443 ARG G 456 -1 O LEU G 452 N VAL G 286 SHEET 4 AA6 6 ARG G 465 PRO G 470 -1 O ARG G 469 N THR G 455 SHEET 5 AA6 6 THR G 358 PHE G 361 1 N ASN G 360 O GLU G 466 SHEET 6 AA6 6 SER G 393 TRP G 395 -1 O SER G 393 N PHE G 361 SHEET 1 AA7 4 SER H 3 GLN H 6 0 SHEET 2 AA7 4 VAL H 18 SER H 25 -1 O GLY H 23 N VAL H 5 SHEET 3 AA7 4 THR H 77 LEU H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 AA7 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA8 6 GLN H 10 LYS H 12 0 SHEET 2 AA8 6 THR H 107 VAL H 111 1 O ILE H 110 N LYS H 12 SHEET 3 AA8 6 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 107 SHEET 4 AA8 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA8 6 PRO H 45 MET H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA8 6 VAL H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA9 4 GLN H 10 LYS H 12 0 SHEET 2 AA9 4 THR H 107 VAL H 111 1 O ILE H 110 N LYS H 12 SHEET 3 AA9 4 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 107 SHEET 4 AA9 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 ALA H 136 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AB1 4 TYR H 176 VAL H 184 -1 O TYR H 176 N TYR H 145 SHEET 4 AB1 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB2 4 SER H 120 LEU H 124 0 SHEET 2 AB2 4 ALA H 136 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AB2 4 TYR H 176 VAL H 184 -1 O TYR H 176 N TYR H 145 SHEET 4 AB2 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB3 3 THR H 151 TRP H 154 0 SHEET 2 AB3 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB3 3 THR H 205 VAL H 211 -1 O VAL H 211 N TYR H 194 SHEET 1 AB4 4 LEU L 4 SER L 7 0 SHEET 2 AB4 4 ALA L 19 PRO L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB4 4 ASN L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AB4 4 PHE L 62 SER L 67 -1 N VAL L 63 O THR L 74 SHEET 1 AB5 5 THR L 10 VAL L 13 0 SHEET 2 AB5 5 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AB5 5 VAL L 85 CYS L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB5 5 ALA L 34 GLN L 38 -1 N TYR L 36 O PHE L 87 SHEET 5 AB5 5 ARG L 45 LEU L 48 -1 O ARG L 45 N SER L 37 SHEET 1 AB6 4 THR L 10 VAL L 13 0 SHEET 2 AB6 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AB6 4 VAL L 85 CYS L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB6 4 GLY L 97 PHE L 98 -1 O GLY L 97 N CYS L 90 SHEET 1 AB7 4 SER L 114 PHE L 118 0 SHEET 2 AB7 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB7 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB7 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB8 4 ALA L 153 LEU L 154 0 SHEET 2 AB8 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB8 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB8 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.03 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.03 SSBOND 3 CYS G 218 CYS G 247 1555 1555 2.03 SSBOND 4 CYS G 228 CYS G 239 1555 1555 2.04 SSBOND 5 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 6 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 7 CYS G 385 CYS G 418 1555 1555 2.03 SSBOND 8 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 9 CYS H 98 CYS H 100J 1555 1555 2.03 SSBOND 10 CYS H 99 CYS H 100E 1555 1555 2.03 SSBOND 11 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 12 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 13 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN G 241 C1 NAG G 501 1555 1555 1.47 LINK ND2 ASN G 262 C1 NAG G 502 1555 1555 1.44 LINK ND2 ASN G 276 C1 NAG G 503 1555 1555 1.47 LINK ND2 ASN G 295 C1 NAG G 504 1555 1555 1.43 LINK ND2 ASN G 334 C1 NAG G 505 1555 1555 1.46 LINK ND2 ASN G 339 C1 NAG G 506 1555 1555 1.47 LINK ND2 ASN G 363 C1 NAG G 508 1555 1555 1.46 LINK ND2 ASN G 386 C1 NAG G 509 1555 1555 1.46 LINK ND2 ASN G 392 C1 NAG G 510 1555 1555 1.47 LINK ND2 ASN G 448 C1 NAG G 511 1555 1555 1.44 CISPEP 1 PHE H 146 PRO H 147 0 -6.47 CISPEP 2 GLU H 148 PRO H 149 0 -3.78 CISPEP 3 SER L 7 PRO L 8 0 -4.67 CISPEP 4 TYR L 140 PRO L 141 0 1.97 CRYST1 121.476 121.476 68.700 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008232 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014556 0.00000