HEADER OXIDOREDUCTASE 16-JAN-15 4XO6 TITLE CRYSTAL STRUCTURE OF HUMAN 3-ALPHA HYDROXYSTEROID DEHYDROGENASE TYPE 3 TITLE 2 IN COMPLEX WITH NADP+, 5ALPHA-ANDROSTAN-3,17-DIONE AND (3BETA, TITLE 3 5ALPHA)-3-HYDROXYANDROSTAN-17-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDO-KETO REDUCTASE FAMILY 1 MEMBER C2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-323; COMPND 5 SYNONYM: 3-ALPHA-HSD3,CHLORDECONE REDUCTASE HOMOLOG HAKRD,DIHYDRODIOL COMPND 6 DEHYDROGENASE 2,DD2,DIHYDRODIOL DEHYDROGENASE/BILE ACID-BINDING COMPND 7 PROTEIN,DD/BABP,TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE,TYPE COMPND 8 III 3-ALPHA-HYDROXYSTEROID DEHYDROGENASE; COMPND 9 EC: 1.3.1.20,1.1.1.357; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKR1C2, DDH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA BARREL, HUMAN 3-ALPHA HDS3, AKR, AKR1C2, ALDO-KETO KEYWDS 2 REDUCTASE, NADPH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHANG,X.-J.HU,S.-X.LIN REVDAT 6 28-FEB-24 4XO6 1 REMARK REVDAT 5 08-JAN-20 4XO6 1 REMARK REVDAT 4 06-SEP-17 4XO6 1 JRNL REMARK REVDAT 3 20-APR-16 4XO6 1 JRNL REVDAT 2 16-MAR-16 4XO6 1 JRNL REVDAT 1 17-FEB-16 4XO6 0 JRNL AUTH B.ZHANG,X.J.HU,X.Q.WANG,J.F.THERIAULT,D.W.ZHU,P.SHANG, JRNL AUTH 2 F.LABRIE,S.X.LIN JRNL TITL HUMAN 3 ALPHA-HYDROXYSTEROID DEHYDROGENASE TYPE 3: JRNL TITL 2 STRUCTURAL CLUES OF 5 ALPHA-DHT REVERSE BINDING AND ENZYME JRNL TITL 3 DOWN-REGULATION DECREASING MCF7 CELL GROWTH. JRNL REF BIOCHEM.J. V. 473 1037 2016 JRNL REFN ESSN 1470-8728 JRNL PMID 26929402 JRNL DOI 10.1042/BCJ20160083 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 201387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 14347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 784 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 162 REMARK 3 SOLVENT ATOMS : 832 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.59000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.519 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5603 ; 0.028 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7645 ; 2.590 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 682 ; 6.060 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;37.146 ;24.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 975 ;11.189 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ; 9.805 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 847 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4196 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -1 323 B -1 323 441 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4XO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 212070 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 17.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1M SODIUM CACODYLATE, REMARK 280 0.2M AMMONIUM SULFATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.47500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 200 CZ ARG B 200 NH1 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 123 CD - CE - NZ ANGL. DEV. = -18.1 DEGREES REMARK 500 ARG A 200 CA - C - O ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG A 200 CA - C - O ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG A 200 CA - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 ASP B 71 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP B 132 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 200 NH1 - CZ - NH2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 200 NE - CZ - NH1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 263 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 276 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU B 306 CB - CG - CD1 ANGL. DEV. = -20.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 197 74.02 -152.98 REMARK 500 ARG A 200 -65.98 -24.91 REMARK 500 SER A 221 163.07 85.56 REMARK 500 ARG A 250 -147.24 -124.69 REMARK 500 ARG A 301 23.63 -153.50 REMARK 500 SER B 51 -159.93 -138.61 REMARK 500 PHE B 197 72.77 -153.82 REMARK 500 SER B 221 168.03 82.40 REMARK 500 ARG B 250 -150.35 -121.29 REMARK 500 ARG B 301 23.26 -151.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5SD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AOX B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L1W RELATED DB: PDB REMARK 900 RELATED ID: 4L1X RELATED DB: PDB REMARK 900 RELATED ID: 4XO7 RELATED DB: PDB DBREF 4XO6 A 2 323 UNP P52895 AK1C2_HUMAN 2 323 DBREF 4XO6 B 2 323 UNP P52895 AK1C2_HUMAN 2 323 SEQADV 4XO6 SER A -1 UNP P52895 EXPRESSION TAG SEQADV 4XO6 VAL A 0 UNP P52895 EXPRESSION TAG SEQADV 4XO6 ASP A 1 UNP P52895 EXPRESSION TAG SEQADV 4XO6 SER B -1 UNP P52895 EXPRESSION TAG SEQADV 4XO6 VAL B 0 UNP P52895 EXPRESSION TAG SEQADV 4XO6 ASP B 1 UNP P52895 EXPRESSION TAG SEQRES 1 A 325 SER VAL ASP ASP SER LYS TYR GLN CYS VAL LYS LEU ASN SEQRES 2 A 325 ASP GLY HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR SEQRES 3 A 325 ALA PRO ALA GLU VAL PRO LYS SER LYS ALA LEU GLU ALA SEQRES 4 A 325 VAL LYS LEU ALA ILE GLU ALA GLY PHE HIS HIS ILE ASP SEQRES 5 A 325 SER ALA HIS VAL TYR ASN ASN GLU GLU GLN VAL GLY LEU SEQRES 6 A 325 ALA ILE ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG SEQRES 7 A 325 GLU ASP ILE PHE TYR THR SER LYS LEU TRP SER ASN SER SEQRES 8 A 325 HIS ARG PRO GLU LEU VAL ARG PRO ALA LEU GLU ARG SER SEQRES 9 A 325 LEU LYS ASN LEU GLN LEU ASP TYR VAL ASP LEU TYR LEU SEQRES 10 A 325 ILE HIS PHE PRO VAL SER VAL LYS PRO GLY GLU GLU VAL SEQRES 11 A 325 ILE PRO LYS ASP GLU ASN GLY LYS ILE LEU PHE ASP THR SEQRES 12 A 325 VAL ASP LEU CYS ALA THR TRP GLU ALA MET GLU LYS CYS SEQRES 13 A 325 LYS ASP ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN SEQRES 14 A 325 PHE ASN HIS ARG LEU LEU GLU MET ILE LEU ASN LYS PRO SEQRES 15 A 325 GLY LEU LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS SEQRES 16 A 325 HIS PRO TYR PHE ASN GLN ARG LYS LEU LEU ASP PHE CYS SEQRES 17 A 325 LYS SER LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU SEQRES 18 A 325 GLY SER HIS ARG GLU GLU PRO TRP VAL ASP PRO ASN SER SEQRES 19 A 325 PRO VAL LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA SEQRES 20 A 325 LYS LYS HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG SEQRES 21 A 325 TYR GLN LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER SEQRES 22 A 325 TYR ASN GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE SEQRES 23 A 325 GLU PHE GLN LEU THR SER GLU GLU MET LYS ALA ILE ASP SEQRES 24 A 325 GLY LEU ASN ARG ASN VAL ARG TYR LEU THR LEU ASP ILE SEQRES 25 A 325 PHE ALA GLY PRO PRO ASN TYR PRO PHE SER ASP GLU TYR SEQRES 1 B 325 SER VAL ASP ASP SER LYS TYR GLN CYS VAL LYS LEU ASN SEQRES 2 B 325 ASP GLY HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR SEQRES 3 B 325 ALA PRO ALA GLU VAL PRO LYS SER LYS ALA LEU GLU ALA SEQRES 4 B 325 VAL LYS LEU ALA ILE GLU ALA GLY PHE HIS HIS ILE ASP SEQRES 5 B 325 SER ALA HIS VAL TYR ASN ASN GLU GLU GLN VAL GLY LEU SEQRES 6 B 325 ALA ILE ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG SEQRES 7 B 325 GLU ASP ILE PHE TYR THR SER LYS LEU TRP SER ASN SER SEQRES 8 B 325 HIS ARG PRO GLU LEU VAL ARG PRO ALA LEU GLU ARG SER SEQRES 9 B 325 LEU LYS ASN LEU GLN LEU ASP TYR VAL ASP LEU TYR LEU SEQRES 10 B 325 ILE HIS PHE PRO VAL SER VAL LYS PRO GLY GLU GLU VAL SEQRES 11 B 325 ILE PRO LYS ASP GLU ASN GLY LYS ILE LEU PHE ASP THR SEQRES 12 B 325 VAL ASP LEU CYS ALA THR TRP GLU ALA MET GLU LYS CYS SEQRES 13 B 325 LYS ASP ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN SEQRES 14 B 325 PHE ASN HIS ARG LEU LEU GLU MET ILE LEU ASN LYS PRO SEQRES 15 B 325 GLY LEU LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS SEQRES 16 B 325 HIS PRO TYR PHE ASN GLN ARG LYS LEU LEU ASP PHE CYS SEQRES 17 B 325 LYS SER LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU SEQRES 18 B 325 GLY SER HIS ARG GLU GLU PRO TRP VAL ASP PRO ASN SER SEQRES 19 B 325 PRO VAL LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA SEQRES 20 B 325 LYS LYS HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG SEQRES 21 B 325 TYR GLN LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER SEQRES 22 B 325 TYR ASN GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE SEQRES 23 B 325 GLU PHE GLN LEU THR SER GLU GLU MET LYS ALA ILE ASP SEQRES 24 B 325 GLY LEU ASN ARG ASN VAL ARG TYR LEU THR LEU ASP ILE SEQRES 25 B 325 PHE ALA GLY PRO PRO ASN TYR PRO PHE SER ASP GLU TYR HET NAP A 401 48 HET 5SD A 402 21 HET SO4 A 403 5 HET EDO A 404 4 HET GOL A 405 6 HET NAP B 401 48 HET AOX B 402 21 HET SO4 B 403 5 HET EDO B 404 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM 5SD 5ALPHA-ANDROSTAN-3,17-DIONE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM AOX (3BETA,5ALPHA)-3-HYDROXYANDROSTAN-17-ONE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN AOX EPIANDROSTERONE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 5SD C19 H28 O2 FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 9 AOX C19 H30 O2 FORMUL 12 HOH *832(H2 O) HELIX 1 AA1 LYS A 31 GLY A 45 1 15 HELIX 2 AA2 ALA A 52 ASN A 56 5 5 HELIX 3 AA3 ASN A 57 ASP A 71 1 15 HELIX 4 AA4 LYS A 75 ILE A 79 5 5 HELIX 5 AA5 TRP A 86 HIS A 90 5 5 HELIX 6 AA6 ARG A 91 GLN A 107 1 17 HELIX 7 AA7 ASP A 143 ALA A 157 1 15 HELIX 8 AA8 ASN A 169 ASN A 178 1 10 HELIX 9 AA9 GLN A 199 LYS A 209 1 11 HELIX 10 AB1 VAL A 234 GLU A 237 5 4 HELIX 11 AB2 ASP A 238 LYS A 249 1 12 HELIX 12 AB3 THR A 251 ARG A 263 1 13 HELIX 13 AB4 ASN A 273 GLN A 282 1 10 HELIX 14 AB5 VAL A 283 PHE A 286 5 4 HELIX 15 AB6 THR A 289 GLY A 298 1 10 HELIX 16 AB7 LEU A 308 ALA A 312 5 5 HELIX 17 AB8 SER B 32 GLY B 45 1 14 HELIX 18 AB9 ALA B 52 ASN B 56 5 5 HELIX 19 AC1 ASN B 57 ASP B 71 1 15 HELIX 20 AC2 LYS B 75 ILE B 79 5 5 HELIX 21 AC3 TRP B 86 HIS B 90 5 5 HELIX 22 AC4 ARG B 91 GLU B 93 5 3 HELIX 23 AC5 LEU B 94 GLN B 107 1 14 HELIX 24 AC6 ASP B 143 ALA B 157 1 15 HELIX 25 AC7 ASN B 169 ASN B 178 1 10 HELIX 26 AC8 GLN B 199 LYS B 209 1 11 HELIX 27 AC9 VAL B 234 GLU B 237 5 4 HELIX 28 AD1 ASP B 238 LYS B 249 1 12 HELIX 29 AD2 THR B 251 ARG B 263 1 13 HELIX 30 AD3 ASN B 273 GLN B 282 1 10 HELIX 31 AD4 VAL B 283 PHE B 286 5 4 HELIX 32 AD5 THR B 289 GLY B 298 1 10 HELIX 33 AD6 LEU B 308 ALA B 312 5 5 SHEET 1 AA1 2 CYS A 7 LYS A 9 0 SHEET 2 AA1 2 PHE A 15 PRO A 17 -1 O MET A 16 N VAL A 8 SHEET 1 AA2 9 LEU A 19 GLY A 22 0 SHEET 2 AA2 9 HIS A 48 ASP A 50 1 O ASP A 50 N PHE A 21 SHEET 3 AA2 9 PHE A 80 LEU A 85 1 O PHE A 80 N ILE A 49 SHEET 4 AA2 9 VAL A 111 ILE A 116 1 O LEU A 115 N LEU A 85 SHEET 5 AA2 9 ALA A 160 SER A 166 1 O LYS A 161 N VAL A 111 SHEET 6 AA2 9 CYS A 188 GLU A 192 1 O GLN A 190 N VAL A 165 SHEET 7 AA2 9 VAL A 212 TYR A 216 1 O TYR A 216 N VAL A 191 SHEET 8 AA2 9 VAL A 266 LYS A 270 1 O VAL A 266 N ALA A 215 SHEET 9 AA2 9 LEU A 19 GLY A 22 1 N GLY A 20 O VAL A 267 SHEET 1 AA3 2 CYS B 7 LYS B 9 0 SHEET 2 AA3 2 PHE B 15 PRO B 17 -1 O MET B 16 N VAL B 8 SHEET 1 AA4 9 LEU B 19 GLY B 22 0 SHEET 2 AA4 9 HIS B 48 ASP B 50 1 O HIS B 48 N PHE B 21 SHEET 3 AA4 9 PHE B 80 LEU B 85 1 O PHE B 80 N ILE B 49 SHEET 4 AA4 9 VAL B 111 ILE B 116 1 O LEU B 115 N LEU B 85 SHEET 5 AA4 9 ALA B 160 SER B 166 1 O LYS B 161 N VAL B 111 SHEET 6 AA4 9 CYS B 188 GLU B 192 1 O GLN B 190 N VAL B 165 SHEET 7 AA4 9 VAL B 212 TYR B 216 1 O TYR B 216 N VAL B 191 SHEET 8 AA4 9 VAL B 266 LYS B 270 1 O VAL B 266 N ALA B 215 SHEET 9 AA4 9 LEU B 19 GLY B 22 1 N GLY B 20 O VAL B 267 CISPEP 1 GLU A 225 PRO A 226 0 4.08 CISPEP 2 GLU B 225 PRO B 226 0 11.39 SITE 1 AC1 36 GLY A 22 THR A 23 TYR A 24 ASP A 50 SITE 2 AC1 36 TYR A 55 LYS A 84 HIS A 117 SER A 166 SITE 3 AC1 36 ASN A 167 GLN A 190 TYR A 216 SER A 217 SITE 4 AC1 36 ALA A 218 LEU A 219 GLY A 220 SER A 221 SITE 5 AC1 36 HIS A 222 ALA A 253 LEU A 268 LYS A 270 SITE 6 AC1 36 SER A 271 TYR A 272 ARG A 276 GLN A 279 SITE 7 AC1 36 ASN A 280 5SD A 402 HOH A 617 HOH A 639 SITE 8 AC1 36 HOH A 709 HOH A 748 HOH A 760 HOH A 814 SITE 9 AC1 36 HOH A 826 HOH A 833 HOH A 851 HOH A 870 SITE 1 AC2 9 TYR A 24 VAL A 54 TRP A 86 HIS A 117 SITE 2 AC2 9 ILE A 129 LEU A 308 NAP A 401 HOH A 639 SITE 3 AC2 9 HOH A 892 SITE 1 AC3 11 ARG A 200 LYS A 207 ARG A 263 HOH A 707 SITE 2 AC3 11 HOH A 811 HOH A 824 HOH A 853 GLN B 262 SITE 3 AC3 11 SER B 290 MET B 293 HOH B 786 SITE 1 AC4 3 ARG A 250 LEU A 254 GLN A 282 SITE 1 AC5 7 GLU A 93 ALA A 150 LYS A 153 HOH A 534 SITE 2 AC5 7 HOH A 562 HOH A 695 HOH A 850 SITE 1 AC6 35 GLY B 22 THR B 23 TYR B 24 ASP B 50 SITE 2 AC6 35 TYR B 55 LYS B 84 HIS B 117 SER B 166 SITE 3 AC6 35 ASN B 167 GLN B 190 TYR B 216 SER B 217 SITE 4 AC6 35 ALA B 218 LEU B 219 GLY B 220 SER B 221 SITE 5 AC6 35 HIS B 222 ALA B 253 LEU B 268 ALA B 269 SITE 6 AC6 35 LYS B 270 SER B 271 TYR B 272 ARG B 276 SITE 7 AC6 35 GLN B 279 ASN B 280 HOH B 620 HOH B 646 SITE 8 AC6 35 HOH B 675 HOH B 684 HOH B 730 HOH B 736 SITE 9 AC6 35 HOH B 739 HOH B 757 HOH B 826 SITE 1 AC7 5 TYR B 24 VAL B 54 ILE B 129 HIS B 222 SITE 2 AC7 5 LEU B 306 SITE 1 AC8 9 GLN A 262 SER A 290 HOH A 824 ARG B 200 SITE 2 AC8 9 LYS B 207 ARG B 263 HOH B 686 HOH B 786 SITE 3 AC8 9 HOH B 788 SITE 1 AC9 4 ARG B 250 LEU B 254 GLN B 282 HOH B 854 CRYST1 54.640 86.950 76.720 90.00 107.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018302 0.000000 0.005630 0.00000 SCALE2 0.000000 0.011501 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013637 0.00000