HEADER SIGNALING PROTEIN 16-JAN-15 4XOL TITLE OBSERVING THE OVERALL ROCKING MOTION OF A PROTEIN IN A CRYSTAL - CUBIC TITLE 2 UBIQUITIN CRYSTALS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POLYUBIQUITIN-C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.COQUELLE,M.PEIXIANG,P.SCHANDA,J.P.COLLETIER REVDAT 3 10-JAN-24 4XOL 1 LINK REVDAT 2 21-OCT-15 4XOL 1 REVDAT 1 14-OCT-15 4XOL 0 JRNL AUTH P.MA,Y.XUE,N.COQUELLE,J.D.HALLER,T.YUWEN,I.AYALA, JRNL AUTH 2 O.MIKHAILOVSKII,D.WILLBOLD,J.P.COLLETIER,N.R.SKRYNNIKOV, JRNL AUTH 3 P.SCHANDA JRNL TITL OBSERVING THE OVERALL ROCKING MOTION OF A PROTEIN IN A JRNL TITL 2 CRYSTAL. JRNL REF NAT COMMUN V. 6 8361 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26436197 JRNL DOI 10.1038/NCOMMS9361 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 4656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9845 - 4.1947 0.98 1459 161 0.1967 0.2337 REMARK 3 2 4.1947 - 3.3303 0.99 1385 155 0.2662 0.3025 REMARK 3 3 3.3303 - 2.9096 0.99 1346 150 0.3569 0.3449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1188 REMARK 3 ANGLE : 0.933 1601 REMARK 3 CHIRALITY : 0.036 194 REMARK 3 PLANARITY : 0.005 205 REMARK 3 DIHEDRAL : 15.436 467 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7484 -8.5345 8.3001 REMARK 3 T TENSOR REMARK 3 T11: 0.5576 T22: 1.2942 REMARK 3 T33: 0.8056 T12: -0.0469 REMARK 3 T13: 0.1726 T23: 0.2678 REMARK 3 L TENSOR REMARK 3 L11: 4.8929 L22: 2.0342 REMARK 3 L33: 7.4001 L12: 0.4270 REMARK 3 L13: -5.0247 L23: 2.3844 REMARK 3 S TENSOR REMARK 3 S11: -1.7045 S12: 0.0184 S13: -0.1872 REMARK 3 S21: 0.1811 S22: 1.5784 S23: 4.1002 REMARK 3 S31: -0.3192 S32: -1.5173 S33: -0.0843 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8777 -7.0314 6.8722 REMARK 3 T TENSOR REMARK 3 T11: 0.6055 T22: 1.3731 REMARK 3 T33: 1.0190 T12: -0.3517 REMARK 3 T13: -0.0543 T23: -0.1662 REMARK 3 L TENSOR REMARK 3 L11: 0.1342 L22: 5.8874 REMARK 3 L33: 0.7130 L12: -0.6129 REMARK 3 L13: 0.3937 L23: -1.1688 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: 0.8823 S13: 0.2350 REMARK 3 S21: -1.2620 S22: 0.2505 S23: 1.8112 REMARK 3 S31: -0.0161 S32: -1.6869 S33: 2.0694 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8473 -3.2211 4.2094 REMARK 3 T TENSOR REMARK 3 T11: 0.4111 T22: 0.4800 REMARK 3 T33: 0.5188 T12: -0.1988 REMARK 3 T13: 0.1261 T23: -0.2245 REMARK 3 L TENSOR REMARK 3 L11: 6.3119 L22: 2.0145 REMARK 3 L33: 1.6539 L12: 2.1328 REMARK 3 L13: 2.9436 L23: 0.9396 REMARK 3 S TENSOR REMARK 3 S11: -0.6760 S12: -0.4338 S13: 0.8757 REMARK 3 S21: -1.1849 S22: 0.9399 S23: 0.8754 REMARK 3 S31: -1.3945 S32: 2.0825 S33: -0.4775 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8010 3.4756 4.5038 REMARK 3 T TENSOR REMARK 3 T11: 0.5326 T22: 0.6156 REMARK 3 T33: 0.6052 T12: 0.0225 REMARK 3 T13: -0.0327 T23: 0.0975 REMARK 3 L TENSOR REMARK 3 L11: 7.7616 L22: 6.0113 REMARK 3 L33: 8.9748 L12: -0.7516 REMARK 3 L13: 1.0270 L23: -2.0097 REMARK 3 S TENSOR REMARK 3 S11: -0.1915 S12: 0.5925 S13: 0.8930 REMARK 3 S21: -0.1011 S22: 1.0251 S23: 0.5471 REMARK 3 S31: -1.3387 S32: -0.3871 S33: -0.7747 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9465 2.1051 14.1772 REMARK 3 T TENSOR REMARK 3 T11: 1.1586 T22: 0.7776 REMARK 3 T33: 0.8368 T12: 0.3638 REMARK 3 T13: -0.0924 T23: -0.2274 REMARK 3 L TENSOR REMARK 3 L11: 1.2796 L22: 2.2098 REMARK 3 L33: 4.8843 L12: 0.9808 REMARK 3 L13: -2.4646 L23: -2.4249 REMARK 3 S TENSOR REMARK 3 S11: -0.0840 S12: -2.2871 S13: 1.5837 REMARK 3 S21: 4.3664 S22: -0.5701 S23: -0.7091 REMARK 3 S31: -2.7831 S32: 0.5350 S33: -1.3829 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9665 -6.8242 12.6585 REMARK 3 T TENSOR REMARK 3 T11: 0.7004 T22: 0.9481 REMARK 3 T33: 1.1403 T12: -0.1627 REMARK 3 T13: -0.1821 T23: 0.6695 REMARK 3 L TENSOR REMARK 3 L11: 4.4133 L22: 2.0057 REMARK 3 L33: 5.0871 L12: 7.4815 REMARK 3 L13: 0.5380 L23: 0.8020 REMARK 3 S TENSOR REMARK 3 S11: 0.2200 S12: -3.9370 S13: -2.3567 REMARK 3 S21: 2.8542 S22: 1.3916 S23: -0.1814 REMARK 3 S31: 0.0846 S32: -1.5110 S33: 0.6577 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7905 -1.1540 12.5350 REMARK 3 T TENSOR REMARK 3 T11: 1.0337 T22: 1.1686 REMARK 3 T33: 0.6847 T12: 0.3825 REMARK 3 T13: 0.0440 T23: 0.3220 REMARK 3 L TENSOR REMARK 3 L11: 8.2679 L22: 4.9287 REMARK 3 L33: -0.0444 L12: -6.4047 REMARK 3 L13: 0.7667 L23: -0.6105 REMARK 3 S TENSOR REMARK 3 S11: -1.1482 S12: 0.2260 S13: 1.7609 REMARK 3 S21: 0.6019 S22: 1.4123 S23: -0.9188 REMARK 3 S31: 0.3530 S32: -2.9525 S33: -0.1348 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9209 35.5809 36.5017 REMARK 3 T TENSOR REMARK 3 T11: 0.9105 T22: 0.7621 REMARK 3 T33: 0.7475 T12: -0.0103 REMARK 3 T13: -0.1597 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 4.6733 L22: 4.6046 REMARK 3 L33: 4.3562 L12: 0.1792 REMARK 3 L13: -0.0116 L23: 0.1820 REMARK 3 S TENSOR REMARK 3 S11: 0.7174 S12: 0.9025 S13: 0.1668 REMARK 3 S21: 0.4631 S22: 0.0091 S23: -1.7326 REMARK 3 S31: -0.1969 S32: 0.5198 S33: -0.1083 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0030 30.1065 43.5139 REMARK 3 T TENSOR REMARK 3 T11: 0.7346 T22: 0.8582 REMARK 3 T33: 0.7220 T12: 0.1862 REMARK 3 T13: -0.0649 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 5.1843 L22: 4.2781 REMARK 3 L33: 5.2945 L12: -0.8065 REMARK 3 L13: 1.2691 L23: 0.8465 REMARK 3 S TENSOR REMARK 3 S11: 0.2771 S12: 0.1355 S13: -0.1243 REMARK 3 S21: 0.0986 S22: -0.4425 S23: -0.4736 REMARK 3 S31: 0.0307 S32: 0.1368 S33: -0.0342 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.3681 31.0628 42.1765 REMARK 3 T TENSOR REMARK 3 T11: 0.6797 T22: 0.8460 REMARK 3 T33: 0.5986 T12: 0.1058 REMARK 3 T13: -0.1530 T23: -0.1583 REMARK 3 L TENSOR REMARK 3 L11: 7.7391 L22: 2.2774 REMARK 3 L33: 4.8414 L12: -0.0955 REMARK 3 L13: 2.0840 L23: 1.0077 REMARK 3 S TENSOR REMARK 3 S11: 0.6072 S12: -0.4401 S13: -0.3515 REMARK 3 S21: 0.5031 S22: -0.1902 S23: 0.0497 REMARK 3 S31: 0.3311 S32: 0.1672 S33: -0.5146 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000204756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.33 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4656 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.910 REMARK 200 RESOLUTION RANGE LOW (A) : 34.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06642 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.77680 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3N30 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH 6.33, 20% PEG 3350, 100MM REMARK 280 ZN ACETATE., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.47300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.47300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.47300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.47300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.47300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.47300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 52.47300 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 52.47300 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 52.47300 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 52.47300 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 52.47300 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 52.47300 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 52.47300 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 52.47300 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 52.47300 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 52.47300 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 52.47300 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 52.47300 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 26.23650 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 78.70950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 78.70950 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 26.23650 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 26.23650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 26.23650 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 78.70950 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 78.70950 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 26.23650 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 78.70950 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 26.23650 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 78.70950 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 26.23650 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 78.70950 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 78.70950 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 78.70950 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 26.23650 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 78.70950 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 26.23650 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 26.23650 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 26.23650 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 78.70950 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 78.70950 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 26.23650 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 26.23650 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 78.70950 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 78.70950 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 78.70950 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 78.70950 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 26.23650 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 78.70950 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 26.23650 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 78.70950 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 26.23650 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 26.23650 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 26.23650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 206 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 55 OD2 ASP B 58 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 21.50 -77.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 1 N REMARK 620 2 MET A 1 O 75.2 REMARK 620 3 GLU A 16 OE1 162.0 87.0 REMARK 620 4 GLU A 16 OE2 116.0 84.4 59.1 REMARK 620 5 ASP A 32 OD1 109.2 64.6 59.9 19.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 18 OE1 REMARK 620 2 GLU A 18 OE2 55.0 REMARK 620 3 ASP A 21 OD1 80.9 26.1 REMARK 620 4 ASP A 21 OD2 64.9 11.5 18.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 64 OE1 REMARK 620 2 GLU A 64 OE2 54.7 REMARK 620 3 HIS A 68 NE2 14.0 68.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 16 OE2 REMARK 620 2 ASP B 32 OD2 28.5 REMARK 620 3 HOH B 204 O 21.8 7.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 18 OE1 REMARK 620 2 GLU B 18 OE2 53.6 REMARK 620 3 ASP B 21 OD1 88.8 35.3 REMARK 620 4 HOH B 205 O 85.6 50.5 43.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 102 DBREF 4XOL A 1 76 UNP P0CG48 UBC_HUMAN 1 76 DBREF 4XOL B 1 76 UNP P0CG48 UBC_HUMAN 1 76 SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN B 101 1 HET ZN B 102 1 HETNAM ZN ZINC ION FORMUL 3 ZN 5(ZN 2+) FORMUL 8 HOH *10(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 THR B 22 GLY B 35 1 14 HELIX 4 AA4 PRO B 37 ASP B 39 5 3 SHEET 1 AA1 5 THR A 12 GLU A 16 0 SHEET 2 AA1 5 GLN A 2 THR A 7 -1 N VAL A 5 O ILE A 13 SHEET 3 AA1 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 THR B 12 GLU B 16 0 SHEET 2 AA2 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 AA2 5 THR B 66 LEU B 71 1 O LEU B 67 N LYS B 6 SHEET 4 AA2 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 AA2 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK N MET A 1 ZN ZN A 303 1555 5555 2.07 LINK O MET A 1 ZN ZN A 303 1555 5555 2.38 LINK OE1 GLU A 16 ZN ZN A 303 1555 5555 2.02 LINK OE2 GLU A 16 ZN ZN A 303 1555 5555 2.39 LINK OE1 GLU A 18 ZN ZN A 302 1555 5555 2.17 LINK OE2 GLU A 18 ZN ZN A 302 1555 5555 2.53 LINK OD1 ASP A 21 ZN ZN A 302 1555 1555 2.26 LINK OD2 ASP A 21 ZN ZN A 302 1555 1555 2.53 LINK OD1 ASP A 32 ZN ZN A 303 1555 1555 1.87 LINK OE1 GLU A 64 ZN ZN A 301 1555 22445 2.24 LINK OE2 GLU A 64 ZN ZN A 301 1555 22445 2.51 LINK NE2 HIS A 68 ZN ZN A 301 1555 1555 2.15 LINK OE2 GLU B 16 ZN ZN B 102 1555 8555 2.13 LINK OE1 GLU B 18 ZN ZN B 101 1555 8555 2.52 LINK OE2 GLU B 18 ZN ZN B 101 1555 8555 2.34 LINK OD1 ASP B 21 ZN ZN B 101 1555 1555 2.39 LINK OD2 ASP B 32 ZN ZN B 102 1555 1555 2.04 LINK ZN ZN B 101 O HOH B 205 1555 1555 2.35 LINK ZN ZN B 102 O HOH B 204 1555 1555 2.44 SITE 1 AC1 3 GLU A 64 HIS A 68 HOH A 402 SITE 1 AC2 3 GLU A 18 ASP A 21 HOH A 403 SITE 1 AC3 4 MET A 1 GLN A 2 GLU A 16 ASP A 32 SITE 1 AC4 3 GLU B 18 ASP B 21 HOH B 205 SITE 1 AC5 5 MET B 1 GLN B 2 GLU B 16 ASP B 32 SITE 2 AC5 5 HOH B 204 CRYST1 104.946 104.946 104.946 90.00 90.00 90.00 P 43 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009529 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009529 0.00000