HEADER VIRAL PROTEIN 16-JAN-15 4XOT TITLE TAILSPIKE PROTEIN MUTANT E372Q OF E. COLI BACTERIOPHAGE HK620 IN TITLE 2 COMPLEX WITH PENTASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL SPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEAD BINDING, UNP RESIDUES 114-710; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE HK620; SOURCE 3 ORGANISM_TAXID: 155148; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS BETA HELIX, PROTEIN-CARBOHYDRATE COMPLEX, PECTIN LYASE FOLD, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.GOHLKE,N.K.BROEKER,U.HEINEMANN,R.SECKLER,S.BARBIRZ REVDAT 4 10-JAN-24 4XOT 1 HETSYN LINK REVDAT 3 29-JUL-20 4XOT 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 06-SEP-17 4XOT 1 REMARK SHEET REVDAT 1 27-JAN-16 4XOT 0 JRNL AUTH U.GOHLKE,N.K.BROEKER,S.KUNSTMANN,M.SANTER,U.HEINEMANN, JRNL AUTH 2 R.LIPOWSKI,R.SECKLER,S.BARBIRZ JRNL TITL ENTHALPIC COST OF WATER REMOVAL FROM A HYDROPHOBIC GLUCOSE JRNL TITL 2 BINDING CAVITY ON HK620 TAILSPIKE PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.K.BROEKER,U.GOHLKE,J.J.MUELLER,C.UETRECHT,U.HEINEMANN, REMARK 1 AUTH 2 R.SECKLER,S.BARBIRZ REMARK 1 TITL SINGLE AMINO ACID EXCHANGE IN BACTERIOPHAGE HK620 TAILSPIKE REMARK 1 TITL 2 PROTEIN RESULTS IN THOUSAND-FOLD INCREASE OF ITS REMARK 1 TITL 3 OLIGOSACCHARIDE AFFINITY. REMARK 1 REF GLYCOBIOLOGY V. 23 59 2013 REMARK 1 REFN ISSN 0959-6658 REMARK 1 PMID 22923442 REMARK 1 DOI 10.1093/GLYCOB/CWS126 REMARK 2 REMARK 2 RESOLUTION. 1.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 250525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.107 REMARK 3 R VALUE (WORKING SET) : 0.105 REMARK 3 FREE R VALUE : 0.130 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 12512 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 16143 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 840 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 852 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : 0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.020 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.022 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.016 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.755 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.987 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.982 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5092 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4501 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6988 ; 1.938 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10329 ; 0.978 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 673 ; 7.658 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;35.881 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 715 ;10.658 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.534 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 773 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6217 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1310 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2591 ; 1.393 ; 0.923 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2592 ; 1.392 ; 0.924 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3297 ; 1.788 ; 1.394 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9593 ; 6.010 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 169 ;35.774 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 10141 ;10.087 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4XOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 250525 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.060 REMARK 200 RESOLUTION RANGE LOW (A) : 43.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.8.0069 REMARK 200 STARTING MODEL: 4XM3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 3.5 M SODIUM FORMATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y+1,X-Y,Z AND -X+ REMARK 300 Y+1,-X+1,Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 74.17900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 37.08950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 64.24090 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1815 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1870 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1905 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1940 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1941 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1945 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 113 O HOH A 1101 0.90 REMARK 500 OD1 ASN A 303 O HOH A 1103 1.68 REMARK 500 O HOH A 1172 O HOH A 1268 1.94 REMARK 500 O HOH A 1127 O HOH A 1692 2.10 REMARK 500 OD1 ASN A 635 OG SER A 700 2.11 REMARK 500 CD GLN A 113 O HOH A 1101 2.12 REMARK 500 ND2 ASN A 303 O HOH A 1110 2.13 REMARK 500 O PRO A 159 O HOH A 1111 2.15 REMARK 500 O HOH A 1127 O HOH A 1531 2.17 REMARK 500 O HOH A 1162 O HOH A 1406 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1346 O HOH A 1396 3675 1.79 REMARK 500 O HOH A 1483 O HOH A 1512 2655 1.82 REMARK 500 O HOH A 1889 O HOH A 1889 6765 2.00 REMARK 500 O HOH A 1545 O HOH A 1571 6766 2.10 REMARK 500 O HOH A 1113 O HOH A 1576 2655 2.15 REMARK 500 O HOH A 1829 O HOH A 1868 2765 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 113 C GLN A 113 O -0.138 REMARK 500 GLU A 353 CB GLU A 353 CG -0.129 REMARK 500 GLU A 353 CG GLU A 353 CD 0.112 REMARK 500 GLU A 353 CD GLU A 353 OE1 -0.071 REMARK 500 SER A 664 CB SER A 664 OG -0.108 REMARK 500 GLU A 667 CD GLU A 667 OE2 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 229 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 229 NE - CZ - NH2 ANGL. DEV. = -8.7 DEGREES REMARK 500 ARG A 324 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 381 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LYS A 542 CD - CE - NZ ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 215 -61.62 -100.97 REMARK 500 PHE A 241 149.56 -170.82 REMARK 500 ASN A 303 65.31 68.90 REMARK 500 ASN A 330 66.16 60.27 REMARK 500 ASP A 339 146.56 -176.91 REMARK 500 ASP A 441 69.52 64.04 REMARK 500 ASP A 470 -179.69 -69.72 REMARK 500 THR A 530 -113.01 -113.99 REMARK 500 ASN A 552 -3.65 78.93 REMARK 500 THR A 613 -72.97 -110.88 REMARK 500 THR A 678 -165.85 -129.95 REMARK 500 THR A 678 -169.75 -109.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1951 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH A1952 DISTANCE = 7.28 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1013 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 211 O REMARK 620 2 HOH A1132 O 53.8 REMARK 620 3 HOH A1203 O 91.0 118.8 REMARK 620 4 HOH A1665 O 79.7 53.2 170.3 REMARK 620 5 HOH A1755 O 94.7 51.4 92.5 85.7 REMARK 620 6 RAM B 4 O2 162.4 143.8 78.7 111.0 99.9 REMARK 620 7 RAM B 4 O3 99.5 126.3 105.4 79.0 156.8 70.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1014 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 565 O REMARK 620 2 SER A 592 O 86.7 REMARK 620 3 GLN A 594 OE1 78.9 98.1 REMARK 620 4 HOH A1720 O 95.3 176.6 85.0 REMARK 620 5 HOH A1726 O 162.8 87.0 86.2 91.8 REMARK 620 6 HOH A1736 O 107.9 87.2 171.7 89.6 87.8 REMARK 620 N 1 2 3 4 5 DBREF 4XOT A 113 709 UNP Q9AYY6 Q9AYY6_BPHK6 114 710 SEQADV 4XOT GLN A 372 UNP Q9AYY6 GLU 373 ENGINEERED MUTATION SEQRES 1 A 597 GLN PHE ARG ALA ILE ILE GLU SER PRO GLU GLY ALA GLY SEQRES 2 A 597 HIS VAL GLY TYR GLN TYR ARG ARG ASN THR GLY SER THR SEQRES 3 A 597 MET ARG MET VAL SER ASP VAL LEU ASP GLU ARG VAL SER SEQRES 4 A 597 LEU TRP ASP PHE HIS CYS ASP PRO SER GLY ASN VAL ILE SEQRES 5 A 597 GLN PRO GLY PRO ASN VAL ASP SER ARG GLN TYR LEU GLN SEQRES 6 A 597 ALA ALA ILE ASP TYR VAL SER SER ASN GLY GLY GLY THR SEQRES 7 A 597 ILE THR ILE PRO ALA GLY TYR THR TRP TYR LEU GLY SER SEQRES 8 A 597 TYR GLY VAL GLY GLY ILE ALA GLY HIS SER GLY ILE ILE SEQRES 9 A 597 GLN LEU ARG SER ASN VAL ASN LEU ASN ILE GLU GLY ARG SEQRES 10 A 597 ILE HIS LEU SER PRO PHE PHE ASP LEU LYS PRO PHE GLN SEQRES 11 A 597 VAL PHE VAL GLY PHE ASP ASN GLY ASP PRO ALA SER SER SEQRES 12 A 597 GLY ASN LEU GLU ASN CYS HIS ILE TYR GLY HIS GLY VAL SEQRES 13 A 597 VAL ASP PHE GLY GLY TYR GLU PHE GLY ALA SER SER GLN SEQRES 14 A 597 LEU ARG ASN GLY VAL ALA PHE GLY ARG SER TYR ASN CYS SEQRES 15 A 597 SER VAL THR GLY ILE THR PHE GLN ASN GLY ASP VAL THR SEQRES 16 A 597 TRP ALA ILE THR LEU GLY TRP ASN GLY TYR GLY SER ASN SEQRES 17 A 597 CYS TYR VAL ARG LYS CYS ARG PHE ILE ASN LEU VAL ASN SEQRES 18 A 597 SER SER VAL ASN ALA ASP HIS SER THR VAL TYR VAL ASN SEQRES 19 A 597 CYS PRO TYR SER GLY VAL GLU SER CYS TYR PHE SER MET SEQRES 20 A 597 SER SER SER PHE ALA ARG ASN ILE ALA CYS SER VAL GLN SEQRES 21 A 597 LEU HIS GLN HIS ASP THR PHE TYR ARG GLY SER THR VAL SEQRES 22 A 597 ASN GLY TYR CYS ARG GLY ALA TYR VAL VAL MET HIS ALA SEQRES 23 A 597 ALA GLU ALA ALA GLY ALA GLY SER TYR ALA TYR ASN MET SEQRES 24 A 597 GLN VAL GLU ASN ASN ILE ALA VAL ILE TYR GLY GLN PHE SEQRES 25 A 597 VAL ILE LEU GLY SER ASP VAL THR ALA THR VAL SER GLY SEQRES 26 A 597 HIS LEU ASN ASP VAL ILE VAL SER GLY ASN ILE VAL SER SEQRES 27 A 597 ILE GLY GLU ARG ALA ALA PHE SER ALA PRO PHE GLY ALA SEQRES 28 A 597 PHE ILE ASP ILE GLY PRO ASP ASN SER GLY ALA SER ASN SEQRES 29 A 597 VAL GLN ASP ILE GLN ARG VAL LEU VAL THR GLY ASN SER SEQRES 30 A 597 PHE TYR ALA PRO ALA ASN ILE THR ASP SER ALA ALA ILE SEQRES 31 A 597 THR LEU ARG ALA ASN LEU ASN GLY CYS THR PHE ILE ALA SEQRES 32 A 597 ASN ASN PHE ASP CYS ARG TYR MET VAL TYR ASN ALA PRO SEQRES 33 A 597 GLY THR THR SER PRO VAL VAL GLN ASN LEU VAL TRP ASP SEQRES 34 A 597 LYS SER ASN VAL ILE GLY GLY THR HIS ALA ASN GLN ARG SEQRES 35 A 597 ALA GLY GLN ASN LEU PHE ASP MET GLN PHE ALA SER VAL SEQRES 36 A 597 VAL ASN SER THR ILE GLU VAL GLN LEU SER CYS GLU ASP SEQRES 37 A 597 LEU SER MET PHE SER CYS ILE LEU PHE PRO ALA SER CYS SEQRES 38 A 597 GLN LEU SER TYR SER LYS ILE THR VAL ASP SER ALA TRP SEQRES 39 A 597 THR LYS SER MET SER ASN THR ALA VAL PHE GLU GLY ASN SEQRES 40 A 597 GLN GLN ALA GLY ALA ASN VAL TYR VAL SER TYR PRO ALA SEQRES 41 A 597 THR VAL ASN LEU THR SER TYR ASN THR GLN GLY ALA VAL SEQRES 42 A 597 PRO PHE PHE SER THR ASP THR ASN TYR ALA TRP VAL THR SEQRES 43 A 597 SER ALA TYR SER LEU SER ILE ASN GLU ASN LEU ASP PHE SEQRES 44 A 597 SER PRO PRO ALA THR TYR THR ASN LYS ALA ASN GLY GLN SEQRES 45 A 597 LEU VAL GLY VAL GLY TYR ASN GLU ILE GLY GLY VAL ARG SEQRES 46 A 597 SER VAL SER VAL ARG LEU MET LEU GLN ARG GLN VAL HET NDG B 1 29 HET GLA B 2 11 HET GLC B 3 11 HET RAM B 4 10 HET NAG B 5 14 HET TRS A1006 8 HET FMT A1007 3 HET FMT A1008 3 HET FMT A1009 3 HET FMT A1010 3 HET FMT A1011 3 HET FMT A1012 3 HET NA A1013 1 HET NA A1014 1 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM RAM ALPHA-L-RHAMNOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN RAM ALPHA-L-RHAMNOSE; 6-DEOXY-ALPHA-L-MANNOPYRANOSE; L- HETSYN 2 RAM RHAMNOSE; RHAMNOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN TRS TRIS BUFFER FORMUL 2 NDG C8 H15 N O6 FORMUL 2 GLA C6 H12 O6 FORMUL 2 GLC C6 H12 O6 FORMUL 2 RAM C6 H12 O5 FORMUL 2 NAG C8 H15 N O6 FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 FMT 6(C H2 O2) FORMUL 10 NA 2(NA 1+) FORMUL 12 HOH *852(H2 O) HELIX 1 AA1 GLN A 113 SER A 120 1 8 HELIX 2 AA2 GLU A 122 HIS A 126 5 5 HELIX 3 AA3 GLN A 130 ASN A 134 5 5 HELIX 4 AA4 VAL A 142 ASP A 147 1 6 HELIX 5 AA5 SER A 151 PHE A 155 5 5 HELIX 6 AA6 SER A 172 ASN A 186 1 15 HELIX 7 AA7 VAL A 206 HIS A 212 5 7 HELIX 8 AA8 PRO A 234 ASP A 237 5 4 HELIX 9 AA9 ASP A 251 SER A 255 5 5 HELIX 10 AB1 PHE A 363 ILE A 367 1 5 HELIX 11 AB2 HIS A 397 ALA A 401 5 5 HELIX 12 AB3 ASN A 619 GLY A 623 5 5 SHEET 1 A 2 GLY A 189 ILE A 193 0 SHEET 2 A 2 VAL A 222 ILE A 226 1 SHEET 1 B11 THR A 198 LEU A 201 0 SHEET 2 B11 ARG A 229 LEU A 232 1 SHEET 3 B11 VAL A 268 ASP A 270 1 SHEET 4 B11 THR A 300 GLN A 302 1 SHEET 5 B11 ARG A 327 ILE A 329 1 SHEET 6 B11 TYR A 356 SER A 358 1 SHEET 7 B11 THR A 384 TYR A 388 1 SHEET 8 B11 ILE A 417 ILE A 420 1 SHEET 9 B11 ILE A 448 ILE A 451 1 SHEET 10 B11 SER A 489 ALA A 492 1 SHEET 11 B11 ASN A 517 ASP A 519 1 SHEET 1 C10 CYS A 261 TYR A 264 0 SHEET 2 C10 CYS A 294 THR A 297 1 SHEET 3 C10 TYR A 322 ARG A 324 1 SHEET 4 C10 SER A 350 GLU A 353 1 SHEET 5 C10 THR A 378 ARG A 381 1 SHEET 6 C10 MET A 411 GLU A 414 1 SHEET 7 C10 VAL A 442 SER A 445 1 SHEET 8 C10 VAL A 483 THR A 486 1 SHEET 9 C10 CYS A 511 ILE A 514 1 SHEET 10 C10 LEU A 538 TRP A 540 1 SHEET 1 D 7 ILE A 310 LEU A 312 0 SHEET 2 D 7 VAL A 343 VAL A 345 1 SHEET 3 D 7 VAL A 371 LEU A 373 1 SHEET 4 D 7 ALA A 392 MET A 396 1 SHEET 5 D 7 VAL A 425 SER A 429 1 SHEET 6 D 7 ILE A 465 ILE A 467 1 SHEET 7 D 7 ILE A 502 LEU A 504 1 SHEET 1 E 2 TYR A 407 TYR A 409 0 SHEET 2 E 2 HIS A 438 ASN A 440 1 SHEET 1 F 3 VAL A 534 GLN A 536 0 SHEET 2 F 3 SER A 566 VAL A 568 1 SHEET 3 F 3 GLN A 594 SER A 596 1 SHEET 1 G 5 THR A 571 VAL A 574 0 SHEET 2 G 5 SER A 598 VAL A 602 1 SHEET 3 G 5 VAL A 626 THR A 637 1 SHEET 4 G 5 SER A 698 ARG A 707 -1 SHEET 5 G 5 SER A 659 SER A 662 -1 SHEET 1 H 2 ILE A 587 PHE A 589 0 SHEET 2 H 2 ALA A 614 PHE A 616 1 SHEET 1 I 3 LEU A 636 SER A 638 0 SHEET 2 I 3 GLY A 643 SER A 649 -1 SHEET 3 I 3 VAL A 686 ASN A 691 -1 LINK O3 NDG B 1 C1 GLA B 2 1555 1555 1.42 LINK O4 GLA B 2 C1 GLC B 3 1555 1555 1.42 LINK O3 GLA B 2 C1 NAG B 5 1555 1555 1.40 LINK O6 GLC B 3 C1 RAM B 4 1555 1555 1.39 LINK O GLY A 211 NA NA A1013 1555 1555 2.32 LINK O ALA A 565 NA NA A1014 1555 1555 2.43 LINK O SER A 592 NA NA A1014 1555 1555 2.35 LINK OE1 GLN A 594 NA NA A1014 1555 1555 2.36 LINK NA NA A1013 O HOH A1132 1555 1555 3.02 LINK NA NA A1013 O HOH A1203 1555 1555 2.40 LINK NA NA A1013 O HOH A1665 1555 1555 2.37 LINK NA NA A1013 O HOH A1755 1555 1555 2.42 LINK NA NA A1013 O2 RAM B 4 1555 1555 2.48 LINK NA NA A1013 O3 RAM B 4 1555 1555 2.36 LINK NA NA A1014 O HOH A1720 1555 1555 2.39 LINK NA NA A1014 O HOH A1726 1555 1555 2.41 LINK NA NA A1014 O HOH A1736 1555 1555 2.47 CRYST1 74.179 74.179 174.678 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013481 0.007783 0.000000 0.00000 SCALE2 0.000000 0.015566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005725 0.00000