HEADER TRANSFERASE 16-JAN-15 4XOX TITLE STRUCTURE OF BETA-KETOACYL-ACP SYNTHASE I (FABB) FROM VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-ACP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-KETOACYL-ACP SYNTHASE I (FABB); COMPND 5 EC: 2.3.1.41; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. N16961; SOURCE 3 ORGANISM_TAXID: 686; SOURCE 4 STRAIN: O1 BIOVAR ELTOR STR. N16961; SOURCE 5 GENE: CD57_00425, DA44_04160, DA72_05820, KV36_05090; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, VIBRIO CHOLERAE, FABB, BETA-KETOACYL-(ACYL CARRIER KEYWDS 3 PROTEIN) SYNTHASE I, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HOU,M.GRABOWSKI,M.CYMBOROWSKI,H.ZHENG,D.R.COOPER,W.F.ANDERSON, AUTHOR 2 W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 4 27-SEP-23 4XOX 1 REMARK REVDAT 3 13-APR-22 4XOX 1 AUTHOR JRNL REMARK REVDAT 2 14-OCT-15 4XOX 1 REMARK REVDAT 1 28-JAN-15 4XOX 0 JRNL AUTH J.HOU,M.GRABOWSKI,M.CYMBOROWSKI,H.ZHENG,D.R.COOPER, JRNL AUTH 2 W.F.ANDERSON,W.MINOR, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL STRUCTURE OF BETA-KETOACYL-ACP SYNTHASE I (FABB) FROM VIBRIO JRNL TITL 2 CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 49221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2492 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2863 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.1530 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.1870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 467 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.689 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6046 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5752 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8174 ; 1.591 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13242 ; 1.308 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 814 ; 6.140 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;41.218 ;24.746 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1018 ;13.193 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.525 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 932 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7002 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1310 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3238 ; 0.867 ; 1.484 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3237 ; 0.867 ; 1.483 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4046 ; 1.416 ; 2.220 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 404 B 1 404 47228 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1657 57.3314 21.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.0553 REMARK 3 T33: 0.1123 T12: -0.0057 REMARK 3 T13: -0.0146 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.4879 L22: 0.6954 REMARK 3 L33: 0.5393 L12: 0.0039 REMARK 3 L13: -0.0624 L23: 0.2347 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: 0.0497 S13: -0.0032 REMARK 3 S21: -0.0894 S22: -0.0308 S23: 0.0592 REMARK 3 S31: 0.0106 S32: -0.0231 S33: 0.0215 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4405 58.4680 21.5231 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.0684 REMARK 3 T33: 0.1130 T12: -0.0050 REMARK 3 T13: -0.0080 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.2633 L22: 0.3091 REMARK 3 L33: 0.3721 L12: 0.0623 REMARK 3 L13: 0.0215 L23: 0.0442 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.0280 S13: -0.0065 REMARK 3 S21: -0.0431 S22: -0.0258 S23: 0.0143 REMARK 3 S31: 0.0012 S32: 0.0102 S33: 0.0196 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 250 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8611 47.7016 36.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.0943 T22: 0.0635 REMARK 3 T33: 0.0940 T12: -0.0170 REMARK 3 T13: -0.0092 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.8821 L22: 0.5564 REMARK 3 L33: 0.2475 L12: 0.2080 REMARK 3 L13: 0.0896 L23: 0.0443 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: -0.0823 S13: -0.0778 REMARK 3 S21: 0.0680 S22: -0.0475 S23: -0.0533 REMARK 3 S31: 0.0277 S32: 0.0988 S33: 0.0084 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 359 A 404 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3845 44.9986 39.5145 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.0523 REMARK 3 T33: 0.0959 T12: -0.0225 REMARK 3 T13: -0.0195 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.7694 L22: 1.5597 REMARK 3 L33: 1.1841 L12: -0.1511 REMARK 3 L13: -0.5043 L23: 0.2554 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.0410 S13: -0.0528 REMARK 3 S21: 0.1732 S22: -0.0413 S23: 0.1245 REMARK 3 S31: 0.0564 S32: 0.0173 S33: 0.0077 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): 56.9337 71.4531 17.2326 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: 0.0639 REMARK 3 T33: 0.1206 T12: -0.0187 REMARK 3 T13: 0.0122 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.6420 L22: 0.5807 REMARK 3 L33: 1.1881 L12: 0.2085 REMARK 3 L13: 0.3355 L23: 0.0390 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.0619 S13: -0.0447 REMARK 3 S21: -0.0755 S22: 0.0436 S23: -0.0626 REMARK 3 S31: -0.0446 S32: 0.0974 S33: -0.0240 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 90 B 258 REMARK 3 ORIGIN FOR THE GROUP (A): 48.2365 68.6164 20.8603 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.0709 REMARK 3 T33: 0.1232 T12: -0.0079 REMARK 3 T13: 0.0083 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.4927 L22: 0.6425 REMARK 3 L33: 0.9949 L12: 0.1280 REMARK 3 L13: 0.2387 L23: 0.2346 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.0428 S13: -0.0223 REMARK 3 S21: -0.0568 S22: 0.0124 S23: -0.0231 REMARK 3 S31: -0.0438 S32: 0.0142 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 259 B 287 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1696 83.8346 26.6587 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.1005 REMARK 3 T33: 0.1453 T12: 0.0352 REMARK 3 T13: 0.0132 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 4.6208 L22: 4.1582 REMARK 3 L33: 4.7814 L12: 0.1798 REMARK 3 L13: 0.6086 L23: 0.3177 REMARK 3 S TENSOR REMARK 3 S11: -0.0892 S12: -0.1467 S13: 0.3154 REMARK 3 S21: -0.0503 S22: 0.0159 S23: 0.0272 REMARK 3 S31: -0.3624 S32: 0.0620 S33: 0.0733 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 288 B 404 REMARK 3 ORIGIN FOR THE GROUP (A): 46.8176 88.8967 22.6789 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.0085 REMARK 3 T33: 0.0813 T12: 0.0023 REMARK 3 T13: -0.0299 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.1097 L22: 1.4051 REMARK 3 L33: 1.5572 L12: 0.2164 REMARK 3 L13: 0.0126 L23: 0.0753 REMARK 3 S TENSOR REMARK 3 S11: -0.0910 S12: 0.0435 S13: 0.1966 REMARK 3 S21: -0.0661 S22: 0.0162 S23: 0.0223 REMARK 3 S31: -0.3649 S32: -0.0728 S33: 0.0748 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4XOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97927 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51875 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.13400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3OYT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM CITRATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.37800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.62900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.32700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.62900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.37800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.32700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 LYS B 250 CE NZ REMARK 470 GLN B 284 CG CD OE1 NE2 REMARK 470 LYS B 288 CG CD CE NZ REMARK 470 GLU B 363 CG CD OE1 OE2 REMARK 470 GLN B 366 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 20 CD GLU A 20 OE2 0.066 REMARK 500 SER B 318 CB SER B 318 OG 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 59.03 -90.02 REMARK 500 ALA A 107 -88.08 -150.64 REMARK 500 SER A 159 46.82 -164.62 REMARK 500 ALA A 160 -127.32 53.00 REMARK 500 ARG A 218 56.40 -154.81 REMARK 500 TYR A 220 -5.44 78.44 REMARK 500 ASP A 225 32.65 -146.98 REMARK 500 SER A 230 -157.17 -142.53 REMARK 500 TYR A 265 -72.42 -137.43 REMARK 500 SER A 298 31.89 82.28 REMARK 500 LEU A 332 -111.56 56.50 REMARK 500 ALA B 107 -90.79 -150.70 REMARK 500 SER B 159 46.21 -163.86 REMARK 500 ALA B 160 -127.28 54.55 REMARK 500 ARG B 218 56.06 -155.42 REMARK 500 TYR B 220 -4.52 76.39 REMARK 500 ASP B 225 32.60 -145.55 REMARK 500 SER B 230 -159.54 -143.79 REMARK 500 TYR B 265 -73.38 -133.81 REMARK 500 SER B 298 32.89 83.24 REMARK 500 ASN B 317 66.86 -100.12 REMARK 500 LEU B 332 -111.94 56.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP95463 RELATED DB: TARGETTRACK DBREF1 4XOX A 1 403 UNP A0A071LMG6_VIBCL DBREF2 4XOX A A0A071LMG6 1 403 DBREF1 4XOX B 1 403 UNP A0A071LMG6_VIBCL DBREF2 4XOX B A0A071LMG6 1 403 SEQADV 4XOX LEU A 404 UNP A0A071LMG EXPRESSION TAG SEQADV 4XOX LEU B 404 UNP A0A071LMG EXPRESSION TAG SEQRES 1 A 404 MET LYS ARG VAL VAL ILE THR GLY MET GLY ILE ILE SER SEQRES 2 A 404 SER ILE GLY ASN ASN VAL GLU GLU VAL LEU ALA SER LEU SEQRES 3 A 404 LYS ALA GLY LYS SER GLY ILE THR ALA SER GLU GLN PHE SEQRES 4 A 404 LYS GLU HIS GLY LEU ARG SER GLN VAL TRP GLY ASP LEU SEQRES 5 A 404 LYS ILE ASN PRO GLU GLU HIS ILE ASP ARG LYS GLN MET SEQRES 6 A 404 ARG PHE MET GLY ASP ALA ALA ALA TYR ALA TYR LEU SER SEQRES 7 A 404 LEU GLU GLN ALA ILE ALA ASP ALA GLY LEU THR PRO GLU SEQRES 8 A 404 GLN VAL SER ASN ASP ARG THR GLY ILE VAL ALA GLY SER SEQRES 9 A 404 GLY GLY ALA SER SER GLU ASN GLN VAL ILE ALA VAL ASP SEQRES 10 A 404 THR GLN ARG GLU LYS GLY VAL LYS ARG VAL GLY PRO TYR SEQRES 11 A 404 MET VAL PRO ARG THR MET SER SER THR VAL SER ALA CYS SEQRES 12 A 404 LEU ALA THR PRO PHE LYS ILE ARG GLY VAL ASN TYR SER SEQRES 13 A 404 ILE SER SER ALA CYS ALA THR SER ALA HIS CYS ILE GLY SEQRES 14 A 404 ASN ALA VAL GLU LEU ILE GLN LEU GLY LYS GLN ASP ILE SEQRES 15 A 404 VAL PHE ALA GLY GLY GLY GLU GLU LEU TYR TRP SER GLN SEQRES 16 A 404 THR MET MET PHE ASP ALA MET GLY ALA LEU SER THR LYS SEQRES 17 A 404 TYR ASN GLU THR PRO GLU LYS ALA SER ARG THR TYR ASP SEQRES 18 A 404 ALA ASP ARG ASP GLY PHE VAL ILE SER GLY GLY GLY GLY SEQRES 19 A 404 MET VAL VAL VAL GLU GLU LEU GLU HIS ALA LEU ALA ARG SEQRES 20 A 404 GLY ALA LYS ILE TYR GLY GLU ILE VAL GLY TYR GLY ALA SEQRES 21 A 404 THR SER ASP GLY TYR ASP MET VAL ALA PRO SER GLY GLU SEQRES 22 A 404 GLY ALA ILE ARG CYS MET LYS MET ALA MET GLN GLY VAL SEQRES 23 A 404 ASP LYS ILE ASP TYR ILE ASN THR HIS GLY THR SER THR SEQRES 24 A 404 PRO VAL GLY ASP VAL LYS GLU LEU GLY ALA ILE GLN GLU SEQRES 25 A 404 VAL PHE GLY GLY ASN SER PRO ALA ILE SER ALA THR LYS SEQRES 26 A 404 ALA MET THR GLY HIS ALA LEU GLY ALA ALA GLY VAL HIS SEQRES 27 A 404 GLU ALA ILE TYR SER THR LEU MET LEU HIS HIS GLY PHE SEQRES 28 A 404 ILE ALA PRO SER ILE ASN ILE ASP THR LEU ASP GLU ALA SEQRES 29 A 404 ALA GLN GLY LEU ASP ILE VAL THR GLU LEU ARG GLU GLN SEQRES 30 A 404 GLU LEU THR THR VAL MET SER ASN SER PHE GLY PHE GLY SEQRES 31 A 404 GLY THR ASN ALA THR LEU VAL ILE LYS LYS TYR GLN GLY SEQRES 32 A 404 LEU SEQRES 1 B 404 MET LYS ARG VAL VAL ILE THR GLY MET GLY ILE ILE SER SEQRES 2 B 404 SER ILE GLY ASN ASN VAL GLU GLU VAL LEU ALA SER LEU SEQRES 3 B 404 LYS ALA GLY LYS SER GLY ILE THR ALA SER GLU GLN PHE SEQRES 4 B 404 LYS GLU HIS GLY LEU ARG SER GLN VAL TRP GLY ASP LEU SEQRES 5 B 404 LYS ILE ASN PRO GLU GLU HIS ILE ASP ARG LYS GLN MET SEQRES 6 B 404 ARG PHE MET GLY ASP ALA ALA ALA TYR ALA TYR LEU SER SEQRES 7 B 404 LEU GLU GLN ALA ILE ALA ASP ALA GLY LEU THR PRO GLU SEQRES 8 B 404 GLN VAL SER ASN ASP ARG THR GLY ILE VAL ALA GLY SER SEQRES 9 B 404 GLY GLY ALA SER SER GLU ASN GLN VAL ILE ALA VAL ASP SEQRES 10 B 404 THR GLN ARG GLU LYS GLY VAL LYS ARG VAL GLY PRO TYR SEQRES 11 B 404 MET VAL PRO ARG THR MET SER SER THR VAL SER ALA CYS SEQRES 12 B 404 LEU ALA THR PRO PHE LYS ILE ARG GLY VAL ASN TYR SER SEQRES 13 B 404 ILE SER SER ALA CYS ALA THR SER ALA HIS CYS ILE GLY SEQRES 14 B 404 ASN ALA VAL GLU LEU ILE GLN LEU GLY LYS GLN ASP ILE SEQRES 15 B 404 VAL PHE ALA GLY GLY GLY GLU GLU LEU TYR TRP SER GLN SEQRES 16 B 404 THR MET MET PHE ASP ALA MET GLY ALA LEU SER THR LYS SEQRES 17 B 404 TYR ASN GLU THR PRO GLU LYS ALA SER ARG THR TYR ASP SEQRES 18 B 404 ALA ASP ARG ASP GLY PHE VAL ILE SER GLY GLY GLY GLY SEQRES 19 B 404 MET VAL VAL VAL GLU GLU LEU GLU HIS ALA LEU ALA ARG SEQRES 20 B 404 GLY ALA LYS ILE TYR GLY GLU ILE VAL GLY TYR GLY ALA SEQRES 21 B 404 THR SER ASP GLY TYR ASP MET VAL ALA PRO SER GLY GLU SEQRES 22 B 404 GLY ALA ILE ARG CYS MET LYS MET ALA MET GLN GLY VAL SEQRES 23 B 404 ASP LYS ILE ASP TYR ILE ASN THR HIS GLY THR SER THR SEQRES 24 B 404 PRO VAL GLY ASP VAL LYS GLU LEU GLY ALA ILE GLN GLU SEQRES 25 B 404 VAL PHE GLY GLY ASN SER PRO ALA ILE SER ALA THR LYS SEQRES 26 B 404 ALA MET THR GLY HIS ALA LEU GLY ALA ALA GLY VAL HIS SEQRES 27 B 404 GLU ALA ILE TYR SER THR LEU MET LEU HIS HIS GLY PHE SEQRES 28 B 404 ILE ALA PRO SER ILE ASN ILE ASP THR LEU ASP GLU ALA SEQRES 29 B 404 ALA GLN GLY LEU ASP ILE VAL THR GLU LEU ARG GLU GLN SEQRES 30 B 404 GLU LEU THR THR VAL MET SER ASN SER PHE GLY PHE GLY SEQRES 31 B 404 GLY THR ASN ALA THR LEU VAL ILE LYS LYS TYR GLN GLY SEQRES 32 B 404 LEU FORMUL 3 HOH *467(H2 O) HELIX 1 AA1 ASN A 18 GLY A 29 1 12 HELIX 2 AA2 SER A 36 HIS A 42 1 7 HELIX 3 AA3 ASN A 55 HIS A 59 5 5 HELIX 4 AA4 ASP A 61 ARG A 66 1 6 HELIX 5 AA5 GLY A 69 GLY A 87 1 19 HELIX 6 AA6 THR A 89 SER A 94 1 6 HELIX 7 AA7 SER A 108 GLY A 123 1 16 HELIX 8 AA8 VAL A 124 VAL A 127 5 4 HELIX 9 AA9 TYR A 130 MET A 136 1 7 HELIX 10 AB1 SER A 138 THR A 146 1 9 HELIX 11 AB2 SER A 159 CYS A 161 5 3 HELIX 12 AB3 ALA A 162 LEU A 177 1 16 HELIX 13 AB4 TYR A 192 MET A 202 1 11 HELIX 14 AB5 THR A 212 ALA A 216 5 5 HELIX 15 AB6 LEU A 241 ARG A 247 1 7 HELIX 16 AB7 GLY A 272 MET A 283 1 12 HELIX 17 AB8 THR A 299 GLY A 315 1 17 HELIX 18 AB9 THR A 324 GLY A 329 1 6 HELIX 19 AC1 ALA A 331 GLY A 333 5 3 HELIX 20 AC2 ALA A 334 GLY A 350 1 17 HELIX 21 AC3 ASP A 362 GLN A 366 5 5 HELIX 22 AC4 ASN B 18 GLY B 29 1 12 HELIX 23 AC5 SER B 36 HIS B 42 1 7 HELIX 24 AC6 ASN B 55 ILE B 60 1 6 HELIX 25 AC7 ASP B 61 ARG B 66 1 6 HELIX 26 AC8 GLY B 69 GLY B 87 1 19 HELIX 27 AC9 THR B 89 SER B 94 1 6 HELIX 28 AD1 SER B 108 GLY B 123 1 16 HELIX 29 AD2 VAL B 124 VAL B 127 5 4 HELIX 30 AD3 TYR B 130 MET B 136 1 7 HELIX 31 AD4 SER B 138 THR B 146 1 9 HELIX 32 AD5 SER B 159 CYS B 161 5 3 HELIX 33 AD6 ALA B 162 LEU B 177 1 16 HELIX 34 AD7 TYR B 192 MET B 202 1 11 HELIX 35 AD8 THR B 212 ALA B 216 5 5 HELIX 36 AD9 LEU B 241 ARG B 247 1 7 HELIX 37 AE1 GLY B 272 MET B 283 1 12 HELIX 38 AE2 THR B 299 GLY B 315 1 17 HELIX 39 AE3 THR B 324 GLY B 329 1 6 HELIX 40 AE4 ALA B 331 GLY B 333 5 3 HELIX 41 AE5 ALA B 334 GLY B 350 1 17 HELIX 42 AE6 ASP B 362 GLN B 366 5 5 SHEET 1 AA122 ASP A 369 ILE A 370 0 SHEET 2 AA122 ALA A 320 SER A 322 1 N ILE A 321 O ASP A 369 SHEET 3 AA122 TYR A 291 ASN A 293 1 N ILE A 292 O ALA A 320 SHEET 4 AA122 THR A 381 GLY A 388 1 O MET A 383 N ASN A 293 SHEET 5 AA122 THR A 392 LYS A 399 -1 O THR A 392 N GLY A 388 SHEET 6 AA122 GLY A 253 SER A 262 -1 N GLU A 254 O LYS A 399 SHEET 7 AA122 VAL A 4 ILE A 12 -1 N ILE A 6 O GLY A 253 SHEET 8 AA122 GLY A 232 GLU A 240 -1 O GLU A 239 N VAL A 5 SHEET 9 AA122 ILE A 182 GLU A 189 -1 N VAL A 183 O VAL A 238 SHEET 10 AA122 THR A 98 GLY A 103 1 N GLY A 99 O PHE A 184 SHEET 11 AA122 ASN A 154 SER A 158 1 O TYR A 155 N ILE A 100 SHEET 12 AA122 ASN B 154 SER B 158 -1 O SER B 158 N SER A 156 SHEET 13 AA122 THR B 98 GLY B 103 1 N ILE B 100 O TYR B 155 SHEET 14 AA122 ILE B 182 GLU B 189 1 O PHE B 184 N GLY B 99 SHEET 15 AA122 GLY B 232 GLU B 240 -1 O VAL B 238 N VAL B 183 SHEET 16 AA122 VAL B 4 ILE B 12 -1 N VAL B 5 O GLU B 239 SHEET 17 AA122 GLY B 253 SER B 262 -1 O GLY B 253 N ILE B 6 SHEET 18 AA122 THR B 392 LYS B 399 -1 O LYS B 399 N GLU B 254 SHEET 19 AA122 THR B 381 GLY B 388 -1 N GLY B 388 O THR B 392 SHEET 20 AA122 TYR B 291 ASN B 293 1 N ASN B 293 O MET B 383 SHEET 21 AA122 ALA B 320 SER B 322 1 O ALA B 320 N ILE B 292 SHEET 22 AA122 ASP B 369 ILE B 370 1 O ASP B 369 N ILE B 321 SHEET 1 AA2 2 THR A 34 ALA A 35 0 SHEET 2 AA2 2 VAL A 48 TRP A 49 -1 O TRP A 49 N THR A 34 SHEET 1 AA3 2 PHE A 351 ILE A 352 0 SHEET 2 AA3 2 ARG A 375 GLU A 376 -1 O ARG A 375 N ILE A 352 SHEET 1 AA4 2 THR B 34 ALA B 35 0 SHEET 2 AA4 2 VAL B 48 TRP B 49 -1 O TRP B 49 N THR B 34 SHEET 1 AA5 2 PHE B 351 ILE B 352 0 SHEET 2 AA5 2 ARG B 375 GLU B 376 -1 O ARG B 375 N ILE B 352 CRYST1 54.756 88.654 167.258 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018263 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005979 0.00000