HEADER VIRAL PROTEIN 19-JAN-15 4XQA TITLE CRYSTAL STRUCTURE OF AD37 FIBER KNOB IN COMPLEX WITH TRIVALENT SIALIC TITLE 2 ACID INHIBITOR ME0462 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 177-365; COMPND 5 SYNONYM: FIBER PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FRAGMENT: FIBER KNOB SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 37; SOURCE 3 ORGANISM_TAXID: 52275; SOURCE 4 GENE: L5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS ADENOVIRUS, FIBER KNOB, PROTEIN CARBOHYDRATE INTERACTION, SIALIC KEYWDS 2 ACID, CARBOHYDRATE MIMIC, MULTIVALENT LIGAND, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.STEHLE,A.M.LIACI REVDAT 6 10-JAN-24 4XQA 1 LINK REVDAT 5 12-JUN-19 4XQA 1 AUTHOR REVDAT 4 06-SEP-17 4XQA 1 REMARK LINK SITE ATOM REVDAT 3 06-JUL-16 4XQA 1 REMARK REVDAT 2 02-SEP-15 4XQA 1 JRNL REVDAT 1 29-JUL-15 4XQA 0 JRNL AUTH R.CARABALLO,M.SALEEB,J.BAUER,A.M.LIACI,N.CHANDRA,R.J.STORM, JRNL AUTH 2 L.FRANGSMYR,W.QIAN,T.STEHLE,N.ARNBERG,M.ELOFSSON JRNL TITL TRIAZOLE LINKER-BASED TRIVALENT SIALIC ACID INHIBITORS OF JRNL TITL 2 ADENOVIRUS TYPE 37 INFECTION OF HUMAN CORNEAL EPITHELIAL JRNL TITL 3 CELLS. JRNL REF ORG.BIOMOL.CHEM. V. 13 9194 2015 JRNL REFN ESSN 1477-0539 JRNL PMID 26177934 JRNL DOI 10.1039/C5OB01025J REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 131319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 6567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2985 - 4.3712 1.00 4474 236 0.1725 0.1681 REMARK 3 2 4.3712 - 3.4699 1.00 4290 226 0.1454 0.1716 REMARK 3 3 3.4699 - 3.0314 1.00 4253 224 0.1524 0.1622 REMARK 3 4 3.0314 - 2.7543 1.00 4229 222 0.1520 0.1856 REMARK 3 5 2.7543 - 2.5569 1.00 4209 222 0.1499 0.1942 REMARK 3 6 2.5569 - 2.4061 1.00 4204 221 0.1435 0.1713 REMARK 3 7 2.4061 - 2.2856 1.00 4196 221 0.1364 0.1715 REMARK 3 8 2.2856 - 2.1861 1.00 4185 220 0.1261 0.1558 REMARK 3 9 2.1861 - 2.1020 1.00 4161 219 0.1201 0.1556 REMARK 3 10 2.1020 - 2.0294 1.00 4185 220 0.1169 0.1647 REMARK 3 11 2.0294 - 1.9660 1.00 4167 220 0.1173 0.1621 REMARK 3 12 1.9660 - 1.9098 1.00 4162 219 0.1133 0.1568 REMARK 3 13 1.9098 - 1.8595 1.00 4156 219 0.1136 0.1613 REMARK 3 14 1.8595 - 1.8141 1.00 4133 217 0.1098 0.1691 REMARK 3 15 1.8141 - 1.7729 1.00 4166 219 0.1094 0.1653 REMARK 3 16 1.7729 - 1.7352 1.00 4130 218 0.1127 0.1572 REMARK 3 17 1.7352 - 1.7004 1.00 4139 217 0.1104 0.1726 REMARK 3 18 1.7004 - 1.6684 1.00 4147 219 0.1083 0.1660 REMARK 3 19 1.6684 - 1.6386 1.00 4151 218 0.1104 0.1656 REMARK 3 20 1.6386 - 1.6108 1.00 4095 216 0.1172 0.1420 REMARK 3 21 1.6108 - 1.5848 1.00 4161 219 0.1233 0.1685 REMARK 3 22 1.5848 - 1.5604 0.99 4102 216 0.1379 0.1950 REMARK 3 23 1.5604 - 1.5375 1.00 4118 217 0.1420 0.1953 REMARK 3 24 1.5375 - 1.5158 0.99 4099 216 0.1475 0.1800 REMARK 3 25 1.5158 - 1.4953 1.00 4127 217 0.1593 0.2207 REMARK 3 26 1.4953 - 1.4759 1.00 4131 217 0.1773 0.2554 REMARK 3 27 1.4759 - 1.4575 1.00 4080 214 0.1885 0.2493 REMARK 3 28 1.4575 - 1.4399 1.00 4154 219 0.1957 0.2410 REMARK 3 29 1.4399 - 1.4231 0.99 4084 215 0.2299 0.2716 REMARK 3 30 1.4231 - 1.4072 0.93 3865 203 0.2750 0.3266 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4578 REMARK 3 ANGLE : 1.494 6246 REMARK 3 CHIRALITY : 0.109 721 REMARK 3 PLANARITY : 0.008 781 REMARK 3 DIHEDRAL : 12.076 1675 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000205137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : FIXED-EXIT LN2 COOLED DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131319 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.407 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.75 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.63 REMARK 200 R MERGE FOR SHELL (I) : 1.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1UXE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 8000, 0.1M HEPES, 0.05M ZINC REMARK 280 ACETATE, PH 6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.11500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.55500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.55500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.11500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 172 REMARK 465 ALA A 173 REMARK 465 MET A 174 REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 TRP A 177 REMARK 465 ASN A 178 REMARK 465 PRO A 179 REMARK 465 LYS A 180 REMARK 465 TYR A 181 REMARK 465 GLY B 172 REMARK 465 ALA B 173 REMARK 465 MET B 174 REMARK 465 GLY B 175 REMARK 465 SER B 176 REMARK 465 TRP B 177 REMARK 465 ASN B 178 REMARK 465 PRO B 179 REMARK 465 LYS B 180 REMARK 465 TYR B 181 REMARK 465 GLY C 172 REMARK 465 ALA C 173 REMARK 465 MET C 174 REMARK 465 GLY C 175 REMARK 465 SER C 176 REMARK 465 TRP C 177 REMARK 465 ASN C 178 REMARK 465 PRO C 179 REMARK 465 LYS C 180 REMARK 465 TYR C 181 REMARK 465 ASP C 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 266 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 298 CG OD1 ND2 REMARK 470 ARG B 184 CZ NH1 NH2 REMARK 470 LYS B 240 CG CD CE NZ REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 ASN B 298 CG OD1 ND2 REMARK 470 SER C 215 OG REMARK 470 LYS C 240 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 299 O HOH A 501 1.85 REMARK 500 OE2 GLU C 351 O HOH C 501 1.92 REMARK 500 OD2 ASP C 318 O HOH C 502 2.05 REMARK 500 NCZ 423 B 401 O HOH B 501 2.09 REMARK 500 O HOH C 626 O HOH C 661 2.12 REMARK 500 OD2 ASP A 318 O HOH A 502 2.17 REMARK 500 OG SER A 215 OG1 THR C 185 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 302 O HOH A 649 4455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 189 156.66 68.71 REMARK 500 CYS A 213 78.14 -116.83 REMARK 500 SER A 274 -152.70 -123.86 REMARK 500 ALA A 283 37.80 -151.06 REMARK 500 SER A 297 -162.61 -161.29 REMARK 500 THR B 183 57.22 -98.39 REMARK 500 ARG B 184 -4.17 -141.46 REMARK 500 THR B 189 154.95 71.12 REMARK 500 THR B 189 153.17 74.50 REMARK 500 ILE B 198 -61.26 -92.36 REMARK 500 CYS B 213 76.80 -114.66 REMARK 500 SER B 274 -154.85 -122.90 REMARK 500 ALA B 283 39.56 -152.12 REMARK 500 PRO C 190 30.98 -84.87 REMARK 500 ILE C 198 -65.18 -93.82 REMARK 500 CYS C 213 78.50 -116.72 REMARK 500 SER C 274 -157.72 -124.75 REMARK 500 ALA C 283 40.88 -152.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 677 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH C 678 DISTANCE = 6.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 GLU A 351 OE2 116.0 REMARK 620 3 ASP B 258 OD1 160.2 54.6 REMARK 620 4 ASP B 258 OD2 159.5 54.4 0.6 REMARK 620 5 HOH B 654 O 96.9 86.1 66.5 66.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 236 NZ REMARK 620 2 GLU A 348 OE1 82.8 REMARK 620 3 GLU A 348 OE2 98.3 54.4 REMARK 620 4 ACT A 403 O 167.9 88.3 83.0 REMARK 620 5 ACT A 403 OXT 114.0 83.0 122.5 56.4 REMARK 620 6 HIS C 231 NE2 29.3 59.1 70.6 146.0 121.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 231 NE2 REMARK 620 2 GLU B 351 OE1 110.1 REMARK 620 3 ASP C 258 OD1 158.2 54.0 REMARK 620 4 ASP C 258 OD2 158.4 54.6 0.7 REMARK 620 5 HOH C 537 O 85.2 164.7 111.3 110.8 REMARK 620 6 HOH C 629 O 106.9 90.3 62.5 61.9 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 423 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K6T RELATED DB: PDB REMARK 900 ALL ENTRIES CONTAIN THE SAME PROTEIN WITH A DIFFERENT TRIVALENT REMARK 900 INHIBITOR COMPOUND FROM THE SAME PUBLICATION. REMARK 900 RELATED ID: 4K6U RELATED DB: PDB REMARK 900 ALL ENTRIES CONTAIN THE SAME PROTEIN WITH A DIFFERENT TRIVALENT REMARK 900 INHIBITOR COMPOUND FROM THE SAME PUBLICATION. REMARK 900 RELATED ID: 4K6V RELATED DB: PDB REMARK 900 ALL ENTRIES CONTAIN THE SAME PROTEIN WITH A DIFFERENT TRIVALENT REMARK 900 INHIBITOR COMPOUND FROM THE SAME PUBLICATION. REMARK 900 RELATED ID: 4K6W RELATED DB: PDB REMARK 900 ALL ENTRIES CONTAIN THE SAME PROTEIN WITH A DIFFERENT TRIVALENT REMARK 900 INHIBITOR COMPOUND FROM THE SAME PUBLICATION. DBREF 4XQA A 177 365 UNP Q64823 Q64823_9ADEN 177 365 DBREF 4XQA B 177 365 UNP Q64823 Q64823_9ADEN 177 365 DBREF 4XQA C 177 365 UNP Q64823 Q64823_9ADEN 177 365 SEQADV 4XQA GLY A 172 UNP Q64823 EXPRESSION TAG SEQADV 4XQA ALA A 173 UNP Q64823 EXPRESSION TAG SEQADV 4XQA MET A 174 UNP Q64823 EXPRESSION TAG SEQADV 4XQA GLY A 175 UNP Q64823 EXPRESSION TAG SEQADV 4XQA SER A 176 UNP Q64823 EXPRESSION TAG SEQADV 4XQA GLY B 172 UNP Q64823 EXPRESSION TAG SEQADV 4XQA ALA B 173 UNP Q64823 EXPRESSION TAG SEQADV 4XQA MET B 174 UNP Q64823 EXPRESSION TAG SEQADV 4XQA GLY B 175 UNP Q64823 EXPRESSION TAG SEQADV 4XQA SER B 176 UNP Q64823 EXPRESSION TAG SEQADV 4XQA GLY C 172 UNP Q64823 EXPRESSION TAG SEQADV 4XQA ALA C 173 UNP Q64823 EXPRESSION TAG SEQADV 4XQA MET C 174 UNP Q64823 EXPRESSION TAG SEQADV 4XQA GLY C 175 UNP Q64823 EXPRESSION TAG SEQADV 4XQA SER C 176 UNP Q64823 EXPRESSION TAG SEQRES 1 A 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 A 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 A 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 A 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 A 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 A 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 A 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 A 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 A 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 A 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 A 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 A 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 A 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 A 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 A 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU SEQRES 1 B 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 B 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 B 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 B 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 B 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 B 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 B 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 B 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 B 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 B 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 B 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 B 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 B 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 B 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 B 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU SEQRES 1 C 194 GLY ALA MET GLY SER TRP ASN PRO LYS TYR ASP THR ARG SEQRES 2 C 194 THR LEU TRP THR THR PRO ASP THR SER PRO ASN CYS THR SEQRES 3 C 194 ILE ALA GLN ASP LYS ASP SER LYS LEU THR LEU VAL LEU SEQRES 4 C 194 THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER LEU SEQRES 5 C 194 ILE VAL VAL ALA GLY LYS TYR HIS ILE ILE ASN ASN LYS SEQRES 6 C 194 THR ASN PRO LYS ILE LYS SER PHE THR ILE LYS LEU LEU SEQRES 7 C 194 PHE ASN LYS ASN GLY VAL LEU LEU ASP ASN SER ASN LEU SEQRES 8 C 194 GLY LYS ALA TYR TRP ASN PHE ARG SER GLY ASN SER ASN SEQRES 9 C 194 VAL SER THR ALA TYR GLU LYS ALA ILE GLY PHE MET PRO SEQRES 10 C 194 ASN LEU VAL ALA TYR PRO LYS PRO SER ASN SER LYS LYS SEQRES 11 C 194 TYR ALA ARG ASP ILE VAL TYR GLY THR ILE TYR LEU GLY SEQRES 12 C 194 GLY LYS PRO ASP GLN PRO ALA VAL ILE LYS THR THR PHE SEQRES 13 C 194 ASN GLN GLU THR GLY CYS GLU TYR SER ILE THR PHE ASN SEQRES 14 C 194 PHE SER TRP SER LYS THR TYR GLU ASN VAL GLU PHE GLU SEQRES 15 C 194 THR THR SER PHE THR PHE SER TYR ILE ALA GLN GLU HET ACT A 401 4 HET ZN A 402 1 HET ACT A 403 4 HET 423 B 401 88 HET ACT B 402 4 HET ZN B 403 1 HET ACT C 401 4 HET ZN C 402 1 HETNAM ACT ACETATE ION HETNAM ZN ZINC ION HETNAM 423 (1-{2-[BIS(2-{4-[({(6R)-5-(ACETYLAMINO)-3,5-DIDEOXY-6- HETNAM 2 423 [(1R,2R)-1,2,3-TRIHYDROXYPROPYL]-BETA-L-THREO-HEX-2- HETNAM 3 423 ULOPYRANONOSYL}OXY)METHYL]-1H-1,2,3-TRIAZOL-1- HETNAM 4 423 YL}ETHYL)AMINO]ETHYL}-1H-1,2,3-TRIAZOL-4-YL)METHYL HETNAM 5 423 (6R)-5-(ACETYLAMINO)-3,5-DIDEOXY-6-[(1R,2R)-1,2,3- HETNAM 6 423 TRIHYDROXYPROPYL]-BETA-L-THREO-HEX-2-ULOPYRANOSIDONIC HETNAM 7 423 ACID FORMUL 4 ACT 4(C2 H3 O2 1-) FORMUL 5 ZN 3(ZN 2+) FORMUL 7 423 C48 H75 N13 O27 FORMUL 12 HOH *540(H2 O) HELIX 1 AA1 ALA A 283 MET A 287 5 5 HELIX 2 AA2 TYR A 302 ARG A 304 5 3 HELIX 3 AA3 GLY A 314 LYS A 316 5 3 HELIX 4 AA4 ALA B 283 MET B 287 5 5 HELIX 5 AA5 TYR B 302 ARG B 304 5 3 HELIX 6 AA6 GLY B 314 LYS B 316 5 3 HELIX 7 AA7 GLY C 263 TRP C 267 5 5 HELIX 8 AA8 ALA C 283 MET C 287 5 5 HELIX 9 AA9 TYR C 302 ARG C 304 5 3 HELIX 10 AB1 GLY C 314 LYS C 316 5 3 SHEET 1 AA1 6 SER A 274 ASN A 275 0 SHEET 2 AA1 6 ASN A 268 SER A 271 -1 N SER A 271 O SER A 274 SHEET 3 AA1 6 THR A 185 TRP A 187 -1 N THR A 185 O ARG A 270 SHEET 4 AA1 6 SER A 204 CYS A 213 -1 O LEU A 210 N LEU A 186 SHEET 5 AA1 6 GLN A 216 VAL A 225 -1 O ILE A 224 N LYS A 205 SHEET 6 AA1 6 PHE A 357 ILE A 362 -1 O PHE A 359 N ALA A 219 SHEET 1 AA2 2 ILE A 232 ASN A 234 0 SHEET 2 AA2 2 GLU A 348 GLU A 351 -1 O VAL A 350 N ILE A 233 SHEET 1 AA3 4 SER A 243 PHE A 250 0 SHEET 2 AA3 4 TYR A 335 SER A 342 -1 O PHE A 339 N ILE A 246 SHEET 3 AA3 4 PRO A 320 PHE A 327 -1 N LYS A 324 O ASN A 340 SHEET 4 AA3 4 ILE A 306 TYR A 312 -1 N VAL A 307 O THR A 325 SHEET 1 AA4 6 SER B 274 ASN B 275 0 SHEET 2 AA4 6 ASN B 268 SER B 271 -1 N SER B 271 O SER B 274 SHEET 3 AA4 6 THR B 185 TRP B 187 -1 N TRP B 187 O ASN B 268 SHEET 4 AA4 6 SER B 204 CYS B 213 -1 O LEU B 210 N LEU B 186 SHEET 5 AA4 6 GLN B 216 VAL B 225 -1 O ILE B 224 N LYS B 205 SHEET 6 AA4 6 PHE B 357 ILE B 362 -1 O PHE B 359 N ALA B 219 SHEET 1 AA5 2 ILE B 232 ASN B 234 0 SHEET 2 AA5 2 GLU B 348 GLU B 351 -1 O VAL B 350 N ILE B 233 SHEET 1 AA6 4 SER B 243 PHE B 250 0 SHEET 2 AA6 4 TYR B 335 SER B 342 -1 O PHE B 339 N ILE B 246 SHEET 3 AA6 4 PRO B 320 PHE B 327 -1 N LYS B 324 O ASN B 340 SHEET 4 AA6 4 ILE B 306 TYR B 312 -1 N VAL B 307 O THR B 325 SHEET 1 AA7 6 SER C 274 ASN C 275 0 SHEET 2 AA7 6 ASN C 268 SER C 271 -1 N SER C 271 O SER C 274 SHEET 3 AA7 6 THR C 185 TRP C 187 -1 N TRP C 187 O ASN C 268 SHEET 4 AA7 6 SER C 204 CYS C 213 -1 O LEU C 210 N LEU C 186 SHEET 5 AA7 6 GLN C 216 VAL C 225 -1 O ILE C 224 N LYS C 205 SHEET 6 AA7 6 PHE C 357 ILE C 362 -1 O PHE C 359 N ALA C 219 SHEET 1 AA8 2 ILE C 232 ASN C 234 0 SHEET 2 AA8 2 GLU C 348 GLU C 351 -1 O VAL C 350 N ILE C 233 SHEET 1 AA9 4 SER C 243 PHE C 250 0 SHEET 2 AA9 4 TYR C 335 SER C 342 -1 O PHE C 339 N ILE C 246 SHEET 3 AA9 4 PRO C 320 PHE C 327 -1 N LYS C 324 O ASN C 340 SHEET 4 AA9 4 ILE C 306 TYR C 312 -1 N VAL C 307 O THR C 325 LINK NE2 HIS A 231 ZN ZN A 402 1555 1555 2.00 LINK NZ LYS A 236 ZN ZN C 402 1555 4555 2.28 LINK OE1 GLU A 348 ZN ZN C 402 1555 4555 2.62 LINK OE2 GLU A 348 ZN ZN C 402 1555 4555 1.99 LINK OE2 GLU A 351 ZN ZN A 402 1555 1555 1.73 LINK ZN ZN A 402 OD1 ASP B 258 3544 1555 2.54 LINK ZN ZN A 402 OD2 ASP B 258 3544 1555 2.13 LINK ZN ZN A 402 O HOH B 654 1555 3554 2.16 LINK O ACT A 403 ZN ZN C 402 1555 4555 2.51 LINK OXT ACT A 403 ZN ZN C 402 1555 4555 1.96 LINK NE2 HIS B 231 ZN ZN B 403 1555 1555 1.99 LINK OE1 GLU B 351 ZN ZN B 403 1555 1555 1.95 LINK ZN ZN B 403 OD1 ASP C 258 4445 1555 2.60 LINK ZN ZN B 403 OD2 ASP C 258 4445 1555 1.97 LINK ZN ZN B 403 O HOH C 537 1555 4545 2.69 LINK ZN ZN B 403 O HOH C 629 1555 4545 2.07 LINK NE2 HIS C 231 ZN ZN C 402 1555 1555 2.04 SITE 1 AC1 4 ILE A 198 LYS A 229 TYR A 230 HOH A 550 SITE 1 AC2 5 HIS A 231 GLU A 351 HOH A 504 ASP B 258 SITE 2 AC2 5 HOH B 654 SITE 1 AC3 51 SER A 297 TYR A 308 TYR A 312 PRO A 317 SITE 2 AC3 51 ASP A 318 PRO A 320 VAL A 322 LYS A 345 SITE 3 AC3 51 TYR B 308 TYR B 312 PRO B 317 ASP B 318 SITE 4 AC3 51 PRO B 320 VAL B 322 SER B 344 LYS B 345 SITE 5 AC3 51 HOH B 586 HOH B 599 HOH B 567 HOH B 569 SITE 6 AC3 51 HOH B 546 HOH B 591 HOH B 580 HOH B 596 SITE 7 AC3 51 HOH B 577 HOH B 589 HOH B 512 HOH B 551 SITE 8 AC3 51 HOH B 574 HOH B 532 HOH B 603 HOH B 556 SITE 9 AC3 51 HOH B 636 HOH B 568 HOH B 559 HOH B 570 SITE 10 AC3 51 HOH B 625 HOH B 514 HOH B 548 HOH B 501 SITE 11 AC3 51 HOH B 623 HOH B 619 TYR C 308 TYR C 312 SITE 12 AC3 51 PRO C 317 ASP C 318 VAL C 322 SER C 344 SITE 13 AC3 51 LYS C 345 HOH C 562 HOH C 574 SITE 1 AC4 5 ILE B 198 LYS B 229 TYR B 230 HOH B 573 SITE 2 AC4 5 HOH B 506 SITE 1 AC5 5 HIS B 231 GLU B 351 ASP C 258 HOH C 537 SITE 2 AC5 5 HOH C 629 SITE 1 AC6 5 LYS A 236 GLU A 348 HIS C 231 ILE C 232 SITE 2 AC6 5 ZN C 402 SITE 1 AC7 4 ILE C 198 LYS C 229 TYR C 230 HOH C 548 SITE 1 AC8 4 LYS A 236 GLU A 348 HIS C 231 ACT A 403 CRYST1 68.230 75.620 131.110 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014656 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007627 0.00000