HEADER TRANSFERASE 19-JAN-15 4XQC TITLE CRYSTAL STRUCTURE OF THE HOMOSPERMIDINE SYNTHASE (HSS) FROM TITLE 2 BLASTOCHLORIS VIRIDIS IN COMPLEX WITH NAD AND 1,3-DIAMINOPROPANE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOSPERMIDINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HSS; COMPND 5 EC: 2.5.1.44; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLASTOCHLORIS VIRIDIS; SOURCE 3 ORGANISM_TAXID: 1079; SOURCE 4 GENE: HSS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM14 KEYWDS HOMOSPERMIDINE SYNTHASE, OXIDOREDUCTASE, TRANSFERASE, ROSSMAN FOLD, KEYWDS 2 1, 3-DIAMINOPROPANE EXPDTA X-RAY DIFFRACTION AUTHOR S.KROSSA REVDAT 3 10-JAN-24 4XQC 1 HETSYN REVDAT 2 07-MAR-18 4XQC 1 REMARK REVDAT 1 27-JAN-16 4XQC 0 JRNL AUTH S.KROSSA,A.FAUST,D.OBER,A.J.SCHEIDIG JRNL TITL COMPREHENSIVE STRUCTURAL CHARACTERIZATION OF THE BACTERIAL JRNL TITL 2 HOMOSPERMIDINE SYNTHASE-AN ESSENTIAL ENZYME OF THE POLYAMINE JRNL TITL 3 METABOLISM. JRNL REF SCI REP V. 6 19501 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26776105 JRNL DOI 10.1038/SREP19501 REMARK 2 REMARK 2 RESOLUTION. 1.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 261555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 13240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.9978 - 3.8710 0.98 8919 456 0.1387 0.1604 REMARK 3 2 3.8710 - 3.1027 0.99 8762 434 0.1327 0.1465 REMARK 3 3 3.1027 - 2.7195 0.98 8621 431 0.1390 0.1708 REMARK 3 4 2.7195 - 2.4750 0.99 8629 475 0.1293 0.1534 REMARK 3 5 2.4750 - 2.2999 0.99 8623 408 0.1235 0.1565 REMARK 3 6 2.2999 - 2.1658 0.98 8551 448 0.1160 0.1462 REMARK 3 7 2.1658 - 2.0583 0.98 8455 455 0.1174 0.1572 REMARK 3 8 2.0583 - 1.9694 0.98 8445 444 0.1207 0.1447 REMARK 3 9 1.9694 - 1.8941 0.98 8379 484 0.1264 0.1716 REMARK 3 10 1.8941 - 1.8292 0.96 8297 468 0.1288 0.1706 REMARK 3 11 1.8292 - 1.7723 0.97 8347 461 0.1350 0.1771 REMARK 3 12 1.7723 - 1.7219 0.97 8386 448 0.1376 0.1637 REMARK 3 13 1.7219 - 1.6768 0.97 8310 454 0.1421 0.1808 REMARK 3 14 1.6768 - 1.6361 0.96 8300 448 0.1499 0.1913 REMARK 3 15 1.6361 - 1.5990 0.96 8245 453 0.1577 0.2081 REMARK 3 16 1.5990 - 1.5651 0.96 8281 427 0.1656 0.1973 REMARK 3 17 1.5651 - 1.5339 0.96 8261 439 0.1707 0.2111 REMARK 3 18 1.5339 - 1.5051 0.96 8236 427 0.1789 0.2181 REMARK 3 19 1.5051 - 1.4783 0.96 8235 419 0.1916 0.2377 REMARK 3 20 1.4783 - 1.4533 0.96 8234 443 0.2057 0.2372 REMARK 3 21 1.4533 - 1.4299 0.96 8167 459 0.2194 0.2652 REMARK 3 22 1.4299 - 1.4080 0.95 8111 482 0.2210 0.2647 REMARK 3 23 1.4080 - 1.3873 0.95 8119 422 0.2323 0.2895 REMARK 3 24 1.3873 - 1.3678 0.95 8073 423 0.2393 0.2674 REMARK 3 25 1.3678 - 1.3494 0.95 8132 465 0.2489 0.2927 REMARK 3 26 1.3494 - 1.3319 0.95 8069 431 0.2571 0.3089 REMARK 3 27 1.3319 - 1.3153 0.94 8091 429 0.2694 0.3093 REMARK 3 28 1.3153 - 1.2995 0.94 8147 391 0.2757 0.3113 REMARK 3 29 1.2995 - 1.2844 0.93 7941 417 0.2772 0.2986 REMARK 3 30 1.2844 - 1.2700 0.82 6949 399 0.2824 0.3119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7944 REMARK 3 ANGLE : 1.312 10864 REMARK 3 CHIRALITY : 0.071 1166 REMARK 3 PLANARITY : 0.007 1429 REMARK 3 DIHEDRAL : 15.516 2891 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976261 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 275738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.233 REMARK 200 RESOLUTION RANGE LOW (A) : 90.038 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14700 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 1.33800 REMARK 200 R SYM FOR SHELL (I) : 1.33800 REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4PLP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-ACETATE, AMMONIUM ACETATE, PEG REMARK 280 10000, NDSB-201, 1,3-DIAMINOPROPANE, 1,4-DIAMINOBUTANE, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.89550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.67100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.89550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.67100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ARG B 344 O3 1PS B 502 1.59 REMARK 500 OE1 GLU B 31 HH21 ARG B 57 1.59 REMARK 500 O HOH A 1333 O HOH A 1342 1.87 REMARK 500 O HOH A 1114 O HOH A 1227 1.98 REMARK 500 O HOH B 1197 O HOH B 1201 2.00 REMARK 500 OD2 ASP A 37 O HOH A 601 2.02 REMARK 500 OD1 ASP B 466 O HOH B 1087 2.04 REMARK 500 OXT ACT B 503 O HOH B 1331 2.04 REMARK 500 O HOH A 822 O HOH A 1331 2.07 REMARK 500 O HOH B 1142 O HOH B 1143 2.08 REMARK 500 O HOH B 821 O HOH B 991 2.09 REMARK 500 O HOH A 723 O HOH A 1271 2.11 REMARK 500 OE1 GLU B 73 O HOH B 939 2.11 REMARK 500 O HOH B 1198 O HOH B 1329 2.12 REMARK 500 O HOH B 838 O HOH B 1302 2.13 REMARK 500 O HOH B 1273 O HOH B 1280 2.13 REMARK 500 O HOH B 1040 O HOH B 1186 2.13 REMARK 500 O HOH A 958 O HOH A 1031 2.13 REMARK 500 OXT ACT A 506 O HOH A 1055 2.14 REMARK 500 OE1 GLU B 460 O HOH B 1166 2.14 REMARK 500 O HOH B 1258 O HOH B 1302 2.14 REMARK 500 O HOH A 739 O HOH A 740 2.14 REMARK 500 O HOH A 1311 O HOH B 1256 2.15 REMARK 500 O HOH A 979 O HOH B 826 2.16 REMARK 500 OD1 ASP A 347 O HOH A 1339 2.16 REMARK 500 O HOH B 814 O HOH B 977 2.16 REMARK 500 O HOH A 1177 O HOH A 1297 2.17 REMARK 500 O HOH B 888 O HOH B 1285 2.17 REMARK 500 O HOH A 1330 O HOH B 945 2.17 REMARK 500 O HOH B 986 O HOH B 1076 2.18 REMARK 500 O HOH A 822 O HOH A 1065 2.18 REMARK 500 O HOH A 1029 O HOH A 1072 2.18 REMARK 500 O HOH B 1188 O HOH B 1237 2.18 REMARK 500 O HOH A 1237 O HOH A 1250 2.19 REMARK 500 O HOH A 1211 O HOH A 1247 2.19 REMARK 500 O HOH A 1031 O HOH A 1332 2.19 REMARK 500 O HOH A 756 O HOH A 1167 2.19 REMARK 500 O HOH A 699 O HOH A 754 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 131 CG GLU A 131 CD -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 37.69 -98.17 REMARK 500 ASN A 162 101.10 -164.47 REMARK 500 SER A 230 118.85 -32.76 REMARK 500 MET A 287 -144.58 53.11 REMARK 500 MET A 287 -143.47 50.67 REMARK 500 ASN A 373 -70.45 68.93 REMARK 500 ASP A 466 84.24 -156.05 REMARK 500 LEU B 120 126.67 -39.49 REMARK 500 CYS B 159 63.66 -118.69 REMARK 500 ASN B 162 102.97 -164.16 REMARK 500 SER B 230 116.64 -31.91 REMARK 500 MET B 287 -146.93 55.58 REMARK 500 MET B 287 -144.52 50.86 REMARK 500 ASN B 373 -74.46 74.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1102 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1110 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1143 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1169 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A1234 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1287 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A1307 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 993 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B1027 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B1031 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B1052 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B1102 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH B1189 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B1204 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B1205 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B1244 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B1306 DISTANCE = 5.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13D A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 13D A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PS B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PLP RELATED DB: PDB REMARK 900 4PLP CONTAINS THE SAME PROTEIN WITHOUT 13D DBREF 4XQC A 3 477 UNP O32323 HSS_BLAVI 3 477 DBREF 4XQC B 3 477 UNP O32323 HSS_BLAVI 3 477 SEQRES 1 A 475 ASP TRP PRO VAL TYR HIS ARG ILE ASP GLY PRO ILE VAL SEQRES 2 A 475 MET ILE GLY PHE GLY SER ILE GLY ARG GLY THR LEU PRO SEQRES 3 A 475 LEU ILE GLU ARG HIS PHE ALA PHE ASP ARG SER LYS LEU SEQRES 4 A 475 VAL VAL ILE ASP PRO SER ASP GLU ALA ARG LYS LEU ALA SEQRES 5 A 475 GLU ALA ARG GLY VAL ARG PHE ILE GLN GLN ALA VAL THR SEQRES 6 A 475 ARG ASP ASN TYR ARG GLU LEU LEU VAL PRO LEU LEU THR SEQRES 7 A 475 ALA GLY PRO GLY GLN GLY PHE CYS VAL ASN LEU SER VAL SEQRES 8 A 475 ASP THR SER SER LEU ASP ILE MET GLU LEU ALA ARG GLU SEQRES 9 A 475 ASN GLY ALA LEU TYR ILE ASP THR VAL VAL GLU PRO TRP SEQRES 10 A 475 LEU GLY PHE TYR PHE ASP PRO ASP LEU LYS PRO GLU ALA SEQRES 11 A 475 ARG SER ASN TYR ALA LEU ARG GLU THR VAL LEU ALA ALA SEQRES 12 A 475 ARG ARG ASN LYS PRO GLY GLY THR THR ALA VAL SER CYS SEQRES 13 A 475 CYS GLY ALA ASN PRO GLY MET VAL SER TRP PHE VAL LYS SEQRES 14 A 475 GLN ALA LEU VAL ASN LEU ALA ALA ASP LEU GLY VAL THR SEQRES 15 A 475 GLY GLU GLU PRO THR THR ARG GLU GLU TRP ALA ARG LEU SEQRES 16 A 475 ALA MET ASP LEU GLY VAL LYS GLY ILE HIS ILE ALA GLU SEQRES 17 A 475 ARG ASP THR GLN ARG ALA SER PHE PRO LYS PRO PHE ASP SEQRES 18 A 475 VAL PHE VAL ASN THR TRP SER VAL GLU GLY PHE VAL SER SEQRES 19 A 475 GLU GLY LEU GLN PRO ALA GLU LEU GLY TRP GLY THR PHE SEQRES 20 A 475 GLU ARG TRP MET PRO ASP ASN ALA ARG GLY HIS ASP SER SEQRES 21 A 475 GLY CYS GLY ALA GLY ILE TYR LEU LEU GLN PRO GLY ALA SEQRES 22 A 475 ASN THR ARG VAL ARG SER TRP THR PRO THR ALA MET ALA SEQRES 23 A 475 GLN TYR GLY PHE LEU VAL THR HIS ASN GLU SER ILE SER SEQRES 24 A 475 ILE ALA ASP PHE LEU THR VAL ARG ASP ALA ALA GLY GLN SEQRES 25 A 475 ALA VAL TYR ARG PRO THR CYS HIS TYR ALA TYR HIS PRO SEQRES 26 A 475 CYS ASN ASP ALA VAL LEU SER LEU HIS GLU MET PHE GLY SEQRES 27 A 475 SER GLY LYS ARG GLN SER ASP TRP ARG ILE LEU ASP GLU SEQRES 28 A 475 THR GLU ILE VAL ASP GLY ILE ASP GLU LEU GLY VAL LEU SEQRES 29 A 475 LEU TYR GLY HIS GLY LYS ASN ALA TYR TRP TYR GLY SER SEQRES 30 A 475 GLN LEU SER ILE GLU GLU THR ARG ARG ILE ALA PRO ASP SEQRES 31 A 475 GLN ASN ALA THR GLY LEU GLN VAL SER SER ALA VAL LEU SEQRES 32 A 475 ALA GLY MET VAL TRP ALA LEU GLU ASN PRO ASN ALA GLY SEQRES 33 A 475 ILE VAL GLU ALA ASP ASP LEU ASP PHE ARG ARG CYS LEU SEQRES 34 A 475 GLU VAL GLN THR PRO TYR LEU GLY PRO VAL VAL GLY VAL SEQRES 35 A 475 TYR THR ASP TRP THR PRO LEU ALA GLY ARG PRO GLY LEU SEQRES 36 A 475 PHE PRO GLU ASP ILE ASP THR SER ASP PRO TRP GLN PHE SEQRES 37 A 475 ARG ASN VAL LEU VAL ARG ASP SEQRES 1 B 475 ASP TRP PRO VAL TYR HIS ARG ILE ASP GLY PRO ILE VAL SEQRES 2 B 475 MET ILE GLY PHE GLY SER ILE GLY ARG GLY THR LEU PRO SEQRES 3 B 475 LEU ILE GLU ARG HIS PHE ALA PHE ASP ARG SER LYS LEU SEQRES 4 B 475 VAL VAL ILE ASP PRO SER ASP GLU ALA ARG LYS LEU ALA SEQRES 5 B 475 GLU ALA ARG GLY VAL ARG PHE ILE GLN GLN ALA VAL THR SEQRES 6 B 475 ARG ASP ASN TYR ARG GLU LEU LEU VAL PRO LEU LEU THR SEQRES 7 B 475 ALA GLY PRO GLY GLN GLY PHE CYS VAL ASN LEU SER VAL SEQRES 8 B 475 ASP THR SER SER LEU ASP ILE MET GLU LEU ALA ARG GLU SEQRES 9 B 475 ASN GLY ALA LEU TYR ILE ASP THR VAL VAL GLU PRO TRP SEQRES 10 B 475 LEU GLY PHE TYR PHE ASP PRO ASP LEU LYS PRO GLU ALA SEQRES 11 B 475 ARG SER ASN TYR ALA LEU ARG GLU THR VAL LEU ALA ALA SEQRES 12 B 475 ARG ARG ASN LYS PRO GLY GLY THR THR ALA VAL SER CYS SEQRES 13 B 475 CYS GLY ALA ASN PRO GLY MET VAL SER TRP PHE VAL LYS SEQRES 14 B 475 GLN ALA LEU VAL ASN LEU ALA ALA ASP LEU GLY VAL THR SEQRES 15 B 475 GLY GLU GLU PRO THR THR ARG GLU GLU TRP ALA ARG LEU SEQRES 16 B 475 ALA MET ASP LEU GLY VAL LYS GLY ILE HIS ILE ALA GLU SEQRES 17 B 475 ARG ASP THR GLN ARG ALA SER PHE PRO LYS PRO PHE ASP SEQRES 18 B 475 VAL PHE VAL ASN THR TRP SER VAL GLU GLY PHE VAL SER SEQRES 19 B 475 GLU GLY LEU GLN PRO ALA GLU LEU GLY TRP GLY THR PHE SEQRES 20 B 475 GLU ARG TRP MET PRO ASP ASN ALA ARG GLY HIS ASP SER SEQRES 21 B 475 GLY CYS GLY ALA GLY ILE TYR LEU LEU GLN PRO GLY ALA SEQRES 22 B 475 ASN THR ARG VAL ARG SER TRP THR PRO THR ALA MET ALA SEQRES 23 B 475 GLN TYR GLY PHE LEU VAL THR HIS ASN GLU SER ILE SER SEQRES 24 B 475 ILE ALA ASP PHE LEU THR VAL ARG ASP ALA ALA GLY GLN SEQRES 25 B 475 ALA VAL TYR ARG PRO THR CYS HIS TYR ALA TYR HIS PRO SEQRES 26 B 475 CYS ASN ASP ALA VAL LEU SER LEU HIS GLU MET PHE GLY SEQRES 27 B 475 SER GLY LYS ARG GLN SER ASP TRP ARG ILE LEU ASP GLU SEQRES 28 B 475 THR GLU ILE VAL ASP GLY ILE ASP GLU LEU GLY VAL LEU SEQRES 29 B 475 LEU TYR GLY HIS GLY LYS ASN ALA TYR TRP TYR GLY SER SEQRES 30 B 475 GLN LEU SER ILE GLU GLU THR ARG ARG ILE ALA PRO ASP SEQRES 31 B 475 GLN ASN ALA THR GLY LEU GLN VAL SER SER ALA VAL LEU SEQRES 32 B 475 ALA GLY MET VAL TRP ALA LEU GLU ASN PRO ASN ALA GLY SEQRES 33 B 475 ILE VAL GLU ALA ASP ASP LEU ASP PHE ARG ARG CYS LEU SEQRES 34 B 475 GLU VAL GLN THR PRO TYR LEU GLY PRO VAL VAL GLY VAL SEQRES 35 B 475 TYR THR ASP TRP THR PRO LEU ALA GLY ARG PRO GLY LEU SEQRES 36 B 475 PHE PRO GLU ASP ILE ASP THR SER ASP PRO TRP GLN PHE SEQRES 37 B 475 ARG ASN VAL LEU VAL ARG ASP HET NAD A 501 70 HET 13D A 502 15 HET 13D A 503 15 HET 1PS A 504 48 HET ACT A 505 7 HET ACT A 506 7 HET ACT A 507 7 HET NAD B 501 70 HET 1PS B 502 48 HET ACT B 503 7 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 13D 1,3-DIAMINOPROPANE HETNAM 1PS 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE HETNAM ACT ACETATE ION HETSYN 1PS 1-(3-SULFOPROPYL) PYRIDINIUM; PPS FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 13D 2(C3 H10 N2) FORMUL 6 1PS 2(C8 H11 N O3 S) FORMUL 7 ACT 4(C2 H3 O2 1-) FORMUL 13 HOH *1490(H2 O) HELIX 1 AA1 GLY A 20 HIS A 33 1 14 HELIX 2 AA2 ASP A 37 SER A 39 5 3 HELIX 3 AA3 SER A 47 ARG A 57 1 11 HELIX 4 AA4 ASN A 70 THR A 80 1 11 HELIX 5 AA5 SER A 96 ASN A 107 1 12 HELIX 6 AA6 GLY A 121 ASP A 125 5 5 HELIX 7 AA7 LYS A 129 ARG A 133 5 5 HELIX 8 AA8 SER A 134 LYS A 149 1 16 HELIX 9 AA9 GLY A 164 LEU A 181 1 18 HELIX 10 AB1 THR A 190 GLY A 202 1 13 HELIX 11 AB2 SER A 230 GLN A 240 1 11 HELIX 12 AB3 HIS A 296 LEU A 306 1 11 HELIX 13 AB4 CYS A 328 GLY A 342 1 15 HELIX 14 AB5 ASP A 352 THR A 354 5 3 HELIX 15 AB6 SER A 382 ALA A 390 1 9 HELIX 16 AB7 ASN A 394 ASN A 414 1 21 HELIX 17 AB8 ASP A 423 LEU A 425 5 3 HELIX 18 AB9 ASP A 426 THR A 435 1 10 HELIX 19 AC1 PRO A 436 LEU A 438 5 3 HELIX 20 AC2 GLN A 469 LEU A 474 1 6 HELIX 21 AC3 GLY B 20 HIS B 33 1 14 HELIX 22 AC4 ASP B 37 SER B 39 5 3 HELIX 23 AC5 SER B 47 ARG B 57 1 11 HELIX 24 AC6 ASN B 70 THR B 80 1 11 HELIX 25 AC7 SER B 96 ASN B 107 1 12 HELIX 26 AC8 LYS B 129 ARG B 133 5 5 HELIX 27 AC9 SER B 134 LYS B 149 1 16 HELIX 28 AD1 GLY B 164 GLY B 182 1 19 HELIX 29 AD2 THR B 190 GLY B 202 1 13 HELIX 30 AD3 SER B 230 GLN B 240 1 11 HELIX 31 AD4 HIS B 296 LEU B 306 1 11 HELIX 32 AD5 CYS B 328 GLY B 342 1 15 HELIX 33 AD6 ASP B 352 THR B 354 5 3 HELIX 34 AD7 SER B 382 ALA B 390 1 9 HELIX 35 AD8 ASN B 394 ASN B 414 1 21 HELIX 36 AD9 ASP B 423 LEU B 425 5 3 HELIX 37 AE1 ASP B 426 THR B 435 1 10 HELIX 38 AE2 PRO B 436 LEU B 438 5 3 HELIX 39 AE3 GLN B 469 LEU B 474 1 6 SHEET 1 AA1 2 HIS A 8 ARG A 9 0 SHEET 2 AA1 2 PHE A 34 ALA A 35 1 O ALA A 35 N HIS A 8 SHEET 1 AA2 7 ARG A 60 ILE A 62 0 SHEET 2 AA2 7 LEU A 41 ILE A 44 1 N VAL A 43 O ILE A 62 SHEET 3 AA2 7 ILE A 14 ILE A 17 1 N MET A 16 O ILE A 44 SHEET 4 AA2 7 PHE A 87 ASN A 90 1 O VAL A 89 N VAL A 15 SHEET 5 AA2 7 LEU A 110 ILE A 112 1 O LEU A 110 N CYS A 88 SHEET 6 AA2 7 ALA A 155 SER A 157 1 O VAL A 156 N TYR A 111 SHEET 7 AA2 7 ILE A 419 GLU A 421 1 O VAL A 420 N SER A 157 SHEET 1 AA3 5 THR A 320 HIS A 326 0 SHEET 2 AA3 5 GLY A 205 ASP A 212 1 N ILE A 208 O HIS A 322 SHEET 3 AA3 5 ASP A 361 TYR A 368 -1 O LEU A 366 N HIS A 207 SHEET 4 AA3 5 ALA A 374 SER A 379 -1 O TYR A 375 N LEU A 367 SHEET 5 AA3 5 VAL A 441 THR A 446 -1 O VAL A 444 N TRP A 376 SHEET 1 AA4 2 ARG A 215 ALA A 216 0 SHEET 2 AA4 2 ILE A 356 ASP A 358 -1 O VAL A 357 N ARG A 215 SHEET 1 AA5 2 VAL A 224 ASN A 227 0 SHEET 2 AA5 2 ASP A 347 ILE A 350 1 O ARG A 349 N PHE A 225 SHEET 1 AA6 3 PRO A 241 GLY A 245 0 SHEET 2 AA6 3 GLY A 267 PRO A 273 -1 O LEU A 270 N ALA A 242 SHEET 3 AA6 3 ALA A 257 ARG A 258 -1 N ARG A 258 O TYR A 269 SHEET 1 AA7 2 ARG A 278 THR A 283 0 SHEET 2 AA7 2 MET A 287 PHE A 292 -1 O GLY A 291 N VAL A 279 SHEET 1 AA8 2 VAL A 308 ARG A 309 0 SHEET 2 AA8 2 ALA A 315 TYR A 317 -1 O VAL A 316 N VAL A 308 SHEET 1 AA9 2 HIS B 8 ARG B 9 0 SHEET 2 AA9 2 PHE B 34 ALA B 35 1 O ALA B 35 N HIS B 8 SHEET 1 AB1 7 ARG B 60 ILE B 62 0 SHEET 2 AB1 7 LEU B 41 ILE B 44 1 N VAL B 43 O ILE B 62 SHEET 3 AB1 7 ILE B 14 ILE B 17 1 N MET B 16 O VAL B 42 SHEET 4 AB1 7 PHE B 87 ASN B 90 1 O VAL B 89 N VAL B 15 SHEET 5 AB1 7 LEU B 110 ILE B 112 1 O LEU B 110 N CYS B 88 SHEET 6 AB1 7 ALA B 155 SER B 157 1 O VAL B 156 N TYR B 111 SHEET 7 AB1 7 ILE B 419 GLU B 421 1 O VAL B 420 N SER B 157 SHEET 1 AB2 5 THR B 320 HIS B 326 0 SHEET 2 AB2 5 GLY B 205 ASP B 212 1 N ILE B 208 O HIS B 322 SHEET 3 AB2 5 ASP B 361 TYR B 368 -1 O LEU B 366 N HIS B 207 SHEET 4 AB2 5 ALA B 374 SER B 379 -1 O TYR B 375 N LEU B 367 SHEET 5 AB2 5 VAL B 441 THR B 446 -1 O VAL B 444 N TRP B 376 SHEET 1 AB3 2 ARG B 215 ALA B 216 0 SHEET 2 AB3 2 ILE B 356 ASP B 358 -1 O VAL B 357 N ARG B 215 SHEET 1 AB4 2 VAL B 224 ASN B 227 0 SHEET 2 AB4 2 ASP B 347 ILE B 350 1 O ARG B 349 N PHE B 225 SHEET 1 AB5 3 PRO B 241 GLY B 245 0 SHEET 2 AB5 3 GLY B 267 PRO B 273 -1 O LEU B 270 N ALA B 242 SHEET 3 AB5 3 ALA B 257 ARG B 258 -1 N ARG B 258 O TYR B 269 SHEET 1 AB6 2 ARG B 278 THR B 283 0 SHEET 2 AB6 2 MET B 287 PHE B 292 -1 O GLN B 289 N SER B 281 SHEET 1 AB7 2 VAL B 308 ARG B 309 0 SHEET 2 AB7 2 ALA B 315 TYR B 317 -1 O VAL B 316 N VAL B 308 CISPEP 1 GLY A 82 PRO A 83 0 5.21 CISPEP 2 ASN A 162 PRO A 163 0 3.95 CISPEP 3 ARG A 454 PRO A 455 0 -1.32 CISPEP 4 GLY B 82 PRO B 83 0 4.38 CISPEP 5 ASN B 162 PRO B 163 0 2.39 CISPEP 6 ARG B 454 PRO B 455 0 -1.14 SITE 1 AC1 31 GLY A 20 SER A 21 ILE A 22 ASP A 45 SITE 2 AC1 31 PRO A 46 SER A 47 ALA A 65 VAL A 66 SITE 3 AC1 31 LEU A 91 SER A 92 VAL A 93 THR A 95 SITE 4 AC1 31 THR A 114 VAL A 115 GLY A 160 ALA A 161 SITE 5 AC1 31 ASN A 162 PRO A 163 TRP A 229 SER A 230 SITE 6 AC1 31 ILE A 350 VAL A 400 13D A 502 13D A 503 SITE 7 AC1 31 HOH A 770 HOH A 838 HOH A 857 HOH A 858 SITE 8 AC1 31 HOH A 905 HOH A 915 HOH A1252 SITE 1 AC2 8 ASN A 162 TRP A 229 GLU A 237 HIS A 296 SITE 2 AC2 8 NAD A 501 HOH A 809 HOH A 876 HOH A1172 SITE 1 AC3 10 VAL A 93 GLU A 117 TYR A 123 GLU A 232 SITE 2 AC3 10 GLY A 233 SER A 236 NAD A 501 HOH A 879 SITE 3 AC3 10 HOH A 899 HOH A 976 SITE 1 AC4 9 PHE A 124 LEU A 239 MET A 338 GLY A 342 SITE 2 AC4 9 LYS A 343 ARG A 344 HOH A1116 HOH A1123 SITE 3 AC4 9 LEU B 457 SITE 1 AC5 3 TRP A 348 HOH A1243 HOH A1339 SITE 1 AC6 5 VAL A 235 ARG A 344 TRP A 348 HOH A1055 SITE 2 AC6 5 HOH A1327 SITE 1 AC7 4 SER A 47 ASP A 48 GLU A 49 HOH A1243 SITE 1 AC8 31 PHE B 19 GLY B 20 SER B 21 ILE B 22 SITE 2 AC8 31 ASP B 45 PRO B 46 ALA B 65 VAL B 66 SITE 3 AC8 31 LEU B 91 SER B 92 VAL B 93 THR B 95 SITE 4 AC8 31 THR B 114 VAL B 115 GLY B 160 ALA B 161 SITE 5 AC8 31 ASN B 162 PRO B 163 TRP B 229 SER B 230 SITE 6 AC8 31 ILE B 350 VAL B 400 HOH B 685 HOH B 694 SITE 7 AC8 31 HOH B 722 HOH B 735 HOH B 739 HOH B 760 SITE 8 AC8 31 HOH B 813 HOH B 844 HOH B1347 SITE 1 AC9 10 LEU A 457 PHE B 124 LEU B 239 MET B 338 SITE 2 AC9 10 GLY B 342 LYS B 343 ARG B 344 HOH B 775 SITE 3 AC9 10 HOH B1063 HOH B1282 SITE 1 AD1 3 ARG B 344 HOH B1110 HOH B1331 CRYST1 60.075 109.791 157.342 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016646 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006356 0.00000