HEADER TRANSFERASE 20-JAN-15 4XQS TITLE CRYSTAL STRUCTURE OF HUMAN FPPS IN COMPLEX WITH ONE MAGNESIUM ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: UNP RESIDUES 67-419; COMPND 5 SYNONYM: FPS,(2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE,FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10,2.5.1.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PARK,A.M.BERGHUIS REVDAT 2 27-SEP-23 4XQS 1 REMARK LINK REVDAT 1 20-JAN-16 4XQS 0 JRNL AUTH J.PARK,A.M.BERGHUIS JRNL TITL CRYSTAL STRUCTURE OF HUMAN FPPS IN COMPLEX WITH ONE JRNL TITL 2 MAGNESIUM ION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1126 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1494 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2638 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.91000 REMARK 3 B22 (A**2) : -3.91000 REMARK 3 B33 (A**2) : 7.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.514 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2704 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2523 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3679 ; 1.627 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5768 ; 0.852 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 6.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;33.350 ;24.463 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;15.519 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 416 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3084 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 624 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1355 ; 2.905 ; 4.210 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1354 ; 2.906 ; 4.209 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1692 ; 4.228 ; 6.313 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1693 ; 4.227 ; 6.313 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1348 ; 3.476 ; 4.433 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1341 ; 3.455 ; 4.417 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1976 ; 5.073 ; 6.523 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3230 ; 6.809 ;34.261 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3218 ; 6.792 ;34.174 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 11 F 32 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8202 81.1574 9.4389 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.3318 REMARK 3 T33: 0.2564 T12: -0.1220 REMARK 3 T13: -0.1759 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 12.0064 L22: 6.5501 REMARK 3 L33: 12.6519 L12: 2.5534 REMARK 3 L13: -9.4846 L23: -2.6007 REMARK 3 S TENSOR REMARK 3 S11: -0.2975 S12: 1.0372 S13: -0.3048 REMARK 3 S21: -0.4678 S22: 0.4121 S23: 0.3175 REMARK 3 S31: 0.4294 S32: -1.3766 S33: -0.1147 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 33 F 146 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5625 82.8115 14.9449 REMARK 3 T TENSOR REMARK 3 T11: 0.1003 T22: 0.0808 REMARK 3 T33: 0.1047 T12: -0.0613 REMARK 3 T13: -0.0589 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 4.6305 L22: 3.3425 REMARK 3 L33: 2.7724 L12: 0.2132 REMARK 3 L13: -1.6500 L23: -0.4183 REMARK 3 S TENSOR REMARK 3 S11: -0.1885 S12: 0.3818 S13: -0.2903 REMARK 3 S21: -0.4969 S22: 0.1200 S23: 0.4984 REMARK 3 S31: 0.3164 S32: -0.4537 S33: 0.0684 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 147 F 349 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9897 78.8459 36.9619 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.2148 REMARK 3 T33: 0.1824 T12: 0.0330 REMARK 3 T13: 0.0629 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 3.5066 L22: 3.3848 REMARK 3 L33: 3.3158 L12: 0.4200 REMARK 3 L13: -0.8749 L23: -1.8184 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.6139 S13: -0.5405 REMARK 3 S21: 0.2982 S22: -0.0479 S23: 0.1822 REMARK 3 S31: 0.2682 S32: 0.3704 S33: 0.0892 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : ACCEL/BRUKER DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21801 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 54.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 1.03500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0073 REMARK 200 STARTING MODEL: 2F7M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.36 M MAGNESIUM SULFATE, 15% REMARK 280 GLYCEROL, 0.085 M MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.48500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.38500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.38500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.24250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.38500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.38500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.72750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.38500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.38500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.24250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.38500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.38500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.72750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.48500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 110.77000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 110.77000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.48500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F -21 REMARK 465 GLY F -20 REMARK 465 SER F -19 REMARK 465 SER F -18 REMARK 465 HIS F -17 REMARK 465 HIS F -16 REMARK 465 HIS F -15 REMARK 465 HIS F -14 REMARK 465 HIS F -13 REMARK 465 HIS F -12 REMARK 465 SER F -11 REMARK 465 SER F -10 REMARK 465 GLY F -9 REMARK 465 ARG F -8 REMARK 465 GLU F -7 REMARK 465 ASN F -6 REMARK 465 LEU F -5 REMARK 465 TYR F -4 REMARK 465 PHE F -3 REMARK 465 GLN F -2 REMARK 465 GLY F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 ASN F 2 REMARK 465 GLY F 3 REMARK 465 ASP F 4 REMARK 465 GLN F 5 REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 465 ASP F 8 REMARK 465 VAL F 9 REMARK 465 TYR F 10 REMARK 465 LYS F 350 REMARK 465 ARG F 351 REMARK 465 ARG F 352 REMARK 465 LYS F 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN F 12 CG CD OE1 NE2 REMARK 470 GLN F 15 CG CD OE1 NE2 REMARK 470 ASP F 16 CG OD1 OD2 REMARK 470 GLN F 19 CG CD OE1 NE2 REMARK 470 ASP F 31 CG OD1 OD2 REMARK 470 GLU F 32 CG CD OE1 OE2 REMARK 470 MET F 33 CG SD CE REMARK 470 LYS F 57 CE NZ REMARK 470 GLU F 73 CG CD OE1 OE2 REMARK 470 ARG F 75 CD NE CZ NH1 NH2 REMARK 470 LYS F 144 NZ REMARK 470 GLN F 180 CG CD OE1 NE2 REMARK 470 VAL F 183 CG1 CG2 REMARK 470 LYS F 191 CG CD CE NZ REMARK 470 LYS F 194 NZ REMARK 470 GLU F 222 CG CD OE1 OE2 REMARK 470 LYS F 223 CE NZ REMARK 470 LYS F 257 CE NZ REMARK 470 GLU F 281 CG CD OE1 OE2 REMARK 470 GLU F 288 CG CD OE1 OE2 REMARK 470 GLN F 292 CG CD OE1 NE2 REMARK 470 LYS F 293 CG CD CE NZ REMARK 470 GLU F 294 CG CD OE1 OE2 REMARK 470 GLU F 296 CG CD OE1 OE2 REMARK 470 LYS F 297 CG CD CE NZ REMARK 470 ARG F 300 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 307 CG CD OE1 OE2 REMARK 470 ARG F 346 CD NE CZ NH1 NH2 REMARK 470 LYS F 347 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR F 305 O HOH F 531 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU F 30 -38.85 -136.92 REMARK 500 ASP F 31 -13.07 -49.05 REMARK 500 PRO F 74 -18.85 -47.34 REMARK 500 PHE F 206 -51.34 -123.04 REMARK 500 LYS F 257 159.36 160.76 REMARK 500 PRO F 280 -37.16 -30.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 243 OD2 REMARK 620 2 HOH F 518 O 76.4 REMARK 620 3 HOH F 519 O 73.4 76.4 REMARK 620 4 HOH F 520 O 95.8 80.3 156.0 REMARK 620 5 HOH F 521 O 99.5 175.6 101.0 102.0 REMARK 620 6 HOH F 522 O 150.3 87.4 78.6 106.0 95.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 F 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XQR RELATED DB: PDB REMARK 900 RELATED ID: 4XQT RELATED DB: PDB DBREF 4XQS F 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 4XQS MET F -21 UNP P14324 EXPRESSION TAG SEQADV 4XQS GLY F -20 UNP P14324 EXPRESSION TAG SEQADV 4XQS SER F -19 UNP P14324 EXPRESSION TAG SEQADV 4XQS SER F -18 UNP P14324 EXPRESSION TAG SEQADV 4XQS HIS F -17 UNP P14324 EXPRESSION TAG SEQADV 4XQS HIS F -16 UNP P14324 EXPRESSION TAG SEQADV 4XQS HIS F -15 UNP P14324 EXPRESSION TAG SEQADV 4XQS HIS F -14 UNP P14324 EXPRESSION TAG SEQADV 4XQS HIS F -13 UNP P14324 EXPRESSION TAG SEQADV 4XQS HIS F -12 UNP P14324 EXPRESSION TAG SEQADV 4XQS SER F -11 UNP P14324 EXPRESSION TAG SEQADV 4XQS SER F -10 UNP P14324 EXPRESSION TAG SEQADV 4XQS GLY F -9 UNP P14324 EXPRESSION TAG SEQADV 4XQS ARG F -8 UNP P14324 EXPRESSION TAG SEQADV 4XQS GLU F -7 UNP P14324 EXPRESSION TAG SEQADV 4XQS ASN F -6 UNP P14324 EXPRESSION TAG SEQADV 4XQS LEU F -5 UNP P14324 EXPRESSION TAG SEQADV 4XQS TYR F -4 UNP P14324 EXPRESSION TAG SEQADV 4XQS PHE F -3 UNP P14324 EXPRESSION TAG SEQADV 4XQS GLN F -2 UNP P14324 EXPRESSION TAG SEQADV 4XQS GLY F -1 UNP P14324 EXPRESSION TAG SEQADV 4XQS HIS F 0 UNP P14324 EXPRESSION TAG SEQRES 1 F 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 F 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 F 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 F 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 F 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 F 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 F 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 F 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 F 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 F 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 F 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 F 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 F 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 F 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 F 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 F 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 F 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 F 375 LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 F 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 F 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 F 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 F 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 F 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 F 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 F 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 F 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 F 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 F 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 F 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET MG F 401 1 HET SO4 F 402 5 HET SO4 F 403 5 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 2 MG MG 2+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *38(H2 O) HELIX 1 AA1 GLN F 12 THR F 29 1 18 HELIX 2 AA2 ILE F 38 ALA F 53 1 16 HELIX 3 AA3 TYR F 58 VAL F 72 1 15 HELIX 4 AA4 GLU F 73 GLN F 77 5 5 HELIX 5 AA5 ASP F 78 ASP F 107 1 30 HELIX 6 AA6 TRP F 118 LYS F 121 5 4 HELIX 7 AA7 VAL F 124 LEU F 126 5 3 HELIX 8 AA8 ASP F 127 ARG F 148 1 22 HELIX 9 AA9 TYR F 152 ALA F 178 1 27 HELIX 10 AB1 ASP F 184 PHE F 188 5 5 HELIX 11 AB2 THR F 189 THR F 201 1 13 HELIX 12 AB3 THR F 201 PHE F 206 1 6 HELIX 13 AB4 PHE F 206 ALA F 217 1 12 HELIX 14 AB5 GLY F 221 GLY F 250 1 30 HELIX 15 AB6 ASP F 251 GLY F 256 1 6 HELIX 16 AB7 SER F 268 ARG F 277 1 10 HELIX 17 AB8 THR F 279 GLU F 288 1 10 HELIX 18 AB9 GLU F 294 LEU F 308 1 15 HELIX 19 AC1 ASP F 309 ALA F 333 1 25 HELIX 20 AC2 PRO F 338 TYR F 349 1 12 SHEET 1 AA1 2 THR F 111 ARG F 112 0 SHEET 2 AA1 2 GLN F 115 ILE F 116 -1 O GLN F 115 N ARG F 112 LINK OD2 ASP F 243 MG MG F 401 1555 1555 2.11 LINK MG MG F 401 O HOH F 518 1555 1555 1.92 LINK MG MG F 401 O HOH F 519 1555 1555 2.17 LINK MG MG F 401 O HOH F 520 1555 1555 2.09 LINK MG MG F 401 O HOH F 521 1555 1555 1.85 LINK MG MG F 401 O HOH F 522 1555 1555 2.00 CISPEP 1 ALA F 334 PRO F 335 0 8.57 SITE 1 AC1 6 ASP F 243 HOH F 518 HOH F 519 HOH F 520 SITE 2 AC1 6 HOH F 521 HOH F 522 SITE 1 AC2 6 GLY F 56 LYS F 57 GLN F 96 ARG F 113 SITE 2 AC2 6 HOH F 508 HOH F 510 SITE 1 AC3 7 HIS F 35 PRO F 36 GLU F 37 ILE F 38 SITE 2 AC3 7 SER F 195 LYS F 198 TYR F 199 CRYST1 110.770 110.770 76.970 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012992 0.00000