data_4XQY # _entry.id 4XQY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4XQY WWPDB D_1000206004 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2016-07-13 _pdbx_database_PDB_obs_spr.pdb_id 5IHD _pdbx_database_PDB_obs_spr.replace_pdb_id 4XQY _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4XSN PDB . unspecified 4XQZ PDB . # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4XQY _pdbx_database_status.recvd_initial_deposition_date 2015-01-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rohner, M.' 1 'Medina-Molner, A.' 2 'Spingler, B.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Calcium(II) and copper(II) bound to the Z-DNA form of d(CGCGCG), complexed by L-lactate and succinate' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Rohner, M.' 1 primary 'Medina-Molner, A.' 2 primary 'Spingler, B.' 3 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 107.50 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 4XQY _cell.details ? _cell.formula_units_Z ? _cell.length_a 27.487 _cell.length_a_esd ? _cell.length_b 35.576 _cell.length_b_esd ? _cell.length_c 31.044 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') ; 1810.205 4 ? ? ? ? 2 non-polymer syn 'COPPER (II) ION' 63.546 4 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 4 non-polymer syn '(2S)-2-HYDROXYPROPANOIC ACID' 90.078 2 ? ? ? ? 5 non-polymer syn 'SUCCINIC ACID' 118.088 1 ? ? ? ? 6 water nat water 18.015 133 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4XQY _struct_ref.pdbx_db_accession 4XQY _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4XQY A 1 ? 6 ? 4XQY 1 ? 6 ? 1 6 2 1 4XQY B 1 ? 6 ? 4XQY 1 ? 6 ? 1 6 3 1 4XQY C 1 ? 6 ? 4XQY 1 ? 6 ? 1 6 4 1 4XQY D 1 ? 6 ? 4XQY 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2OP non-polymer . '(2S)-2-HYDROXYPROPANOIC ACID' ? 'C3 H6 O3' 90.078 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SIN non-polymer . 'SUCCINIC ACID' ? 'C4 H6 O4' 118.088 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4XQY _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'MES, calcium lactate, EtOAc' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 183 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type STOE _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2005-11-07 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator graphite _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'SEALED TUBE' _diffrn_source.target ? _diffrn_source.type 'Cu FINE FOCUS' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4XQY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.57 _reflns.d_resolution_low 26.22 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7936 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 4 _reflns.percent_possible_obs 97.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.80 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.51 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.Rmerge_I_obs 0.1736 _reflns_shell.d_res_high 1.57 _reflns_shell.d_res_low 1.70 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_sigI_obs 3.77 _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_gt ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_gt ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_redundancy 2.96 _reflns_shell.pdbx_rejects ? _reflns_shell.percent_possible_all 89.0 _reflns_shell.percent_possible_gt ? _reflns_shell.percent_possible_obs ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4XQY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.570 _refine.ls_d_res_low 26.215 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7924 _refine.ls_number_reflns_R_free 397 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.78 _refine.ls_percent_reflns_R_free 5.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1598 _refine.ls_R_factor_R_free 0.1965 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1578 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.46 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2DCG _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.30 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.14 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 480 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 639 _refine_hist.d_res_high 1.570 _refine_hist.d_res_low 26.215 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 570 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.026 ? 873 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 29.631 ? 246 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.054 ? 98 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 28 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5701 1.7972 . . 125 2379 94.00 . . . 0.2094 . 0.1494 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7972 2.2641 . . 135 2566 100.00 . . . 0.1936 . 0.1693 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2641 26.2185 . . 137 2582 100.00 . . . 0.1943 . 0.1543 . . . . . . . . . . # _struct.entry_id 4XQY _struct.title 'Calcium(II) and copper(II) bound to the Z-DNA form of d(CGCGCG), complexed by L-lactate and succinate' _struct.pdbx_descriptor ;DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4XQY _struct_keywords.text 'Z-DNA, copper(II), DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 2 ? I N N 2 ? J N N 4 ? K N N 2 ? L N N 3 ? M N N 5 ? N N N 6 ? O N N 6 ? P N N 6 ? Q N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A DG 2 OP1 ? ? ? 1_555 F CA . CA ? ? A DG 2 A CA 102 1_555 ? ? ? ? ? ? ? 2.284 ? metalc2 metalc ? ? A DG 2 N7 ? ? ? 1_555 E CU . CU ? ? A DG 2 A CU 101 1_555 ? ? ? ? ? ? ? 1.972 ? metalc3 metalc ? ? B DG 2 N7 ? ? ? 1_555 H CU . CU ? ? B DG 2 B CU 101 1_555 ? ? ? ? ? ? ? 2.011 ? metalc4 metalc ? ? B DG 6 N7 ? ? ? 1_555 I CU . CU ? ? B DG 6 B CU 102 1_555 ? ? ? ? ? ? ? 1.999 ? metalc5 metalc ? ? C DG 2 OP1 ? ? ? 1_555 L CA . CA ? ? C DG 2 C CA 102 1_555 ? ? ? ? ? ? ? 2.296 ? metalc6 metalc ? ? C DG 2 N7 ? ? ? 1_555 H CU . CU ? ? C DG 2 B CU 101 1_555 ? ? ? ? ? ? ? 1.980 ? metalc7 metalc ? ? C DG 4 N7 ? ? ? 1_555 K CU . CU ? ? C DG 4 C CU 101 1_555 ? ? ? ? ? ? ? 2.025 ? metalc8 metalc ? ? D DG 2 N7 ? ? ? 1_555 E CU . CU ? ? D DG 2 A CU 101 1_555 ? ? ? ? ? ? ? 2.005 ? metalc9 metalc ? ? E CU . CU ? ? ? 1_555 G 2OP . OHN ? ? A CU 101 A 2OP 103 1_555 ? ? ? ? ? ? ? 2.325 ? metalc10 metalc ? ? E CU . CU ? ? ? 1_555 G 2OP . OXT ? ? A CU 101 A 2OP 103 1_555 ? ? ? ? ? ? ? 1.927 ? metalc11 metalc ? ? E CU . CU ? ? ? 1_555 M SIN . O4 ? ? A CU 101 D SIN 101 1_555 ? ? ? ? ? ? ? 1.988 ? metalc12 metalc ? ? F CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 102 A HOH 206 1_555 ? ? ? ? ? ? ? 2.446 ? metalc13 metalc ? ? H CU . CU ? ? ? 1_555 M SIN . O1 ? ? B CU 101 D SIN 101 1_555 ? ? ? ? ? ? ? 1.941 ? metalc14 metalc ? ? H CU . CU ? ? ? 1_555 J 2OP . O ? ? B CU 101 B 2OP 103 1_555 ? ? ? ? ? ? ? 1.983 ? metalc15 metalc ? ? H CU . CU ? ? ? 1_555 J 2OP . OHN ? ? B CU 101 B 2OP 103 1_555 ? ? ? ? ? ? ? 2.366 ? metalc16 metalc ? ? I CU . CU ? ? ? 1_555 O HOH . O ? ? B CU 102 B HOH 205 1_555 ? ? ? ? ? ? ? 1.846 ? metalc17 metalc ? ? I CU . CU ? ? ? 1_555 O HOH . O ? ? B CU 102 B HOH 202 1_555 ? ? ? ? ? ? ? 2.253 ? metalc18 metalc ? ? I CU . CU ? ? ? 1_555 O HOH . O ? ? B CU 102 B HOH 206 1_555 ? ? ? ? ? ? ? 2.457 ? metalc19 metalc ? ? K CU . CU ? ? ? 1_555 P HOH . O ? ? C CU 101 C HOH 215 1_555 ? ? ? ? ? ? ? 2.302 ? metalc20 metalc ? ? L CA . CA ? ? ? 1_555 P HOH . O ? ? C CA 102 C HOH 214 1_555 ? ? ? ? ? ? ? 2.497 ? metalc21 metalc ? ? A DG 2 OP2 ? ? ? 1_555 L CA . CA ? ? A DG 2 C CA 102 1_655 ? ? ? ? ? ? ? 2.368 ? metalc22 metalc ? ? C DG 2 OP2 ? ? ? 1_555 F CA . CA ? ? C DG 2 A CA 102 1_455 ? ? ? ? ? ? ? 2.368 ? metalc23 metalc ? ? D DC 3 OP1 A ? ? 1_555 F CA . CA ? ? D DC 3 A CA 102 2_545 ? ? ? ? ? ? ? 2.275 ? metalc24 metalc ? ? D DC 3 OP2 B ? ? 1_555 F CA . CA ? ? D DC 3 A CA 102 2_545 ? ? ? ? ? ? ? 2.544 ? metalc25 metalc ? ? D DG 6 N7 ? ? ? 1_555 K CU . CU ? ? D DG 6 C CU 101 2_445 ? ? ? ? ? ? ? 2.000 ? metalc26 metalc ? ? F CA . CA ? ? ? 1_555 Q HOH . O ? ? A CA 102 D HOH 217 2_555 ? ? ? ? ? ? ? 2.498 ? metalc27 metalc ? ? F CA . CA ? ? ? 1_555 Q HOH . O ? ? A CA 102 D HOH 219 2_555 ? ? ? ? ? ? ? 2.399 ? metalc28 metalc ? ? K CU . CU ? ? ? 1_555 O HOH . O ? ? C CU 101 B HOH 205 2_555 ? ? ? ? ? ? ? 2.036 ? metalc29 metalc ? ? K CU . CU ? ? ? 1_555 Q HOH . O ? ? C CU 101 D HOH 209 2_455 ? ? ? ? ? ? ? 2.072 ? metalc30 metalc ? ? L CA . CA ? ? ? 1_555 N HOH . O ? ? C CA 102 A HOH 213 1_455 ? ? ? ? ? ? ? 2.691 ? metalc31 metalc ? ? L CA . CA ? ? ? 1_555 N HOH . O ? ? C CA 102 A HOH 216 1_455 ? ? ? ? ? ? ? 2.337 ? metalc32 metalc ? ? L CA . CA ? ? ? 1_555 Q HOH . O ? ? C CA 102 D HOH 221 2_455 ? ? ? ? ? ? ? 2.505 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 1 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 1 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 1 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 2 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 2 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 2 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C DC 3 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 3 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? C DC 3 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 3 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? C DC 3 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 3 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 4 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 4 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 4 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 5 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 5 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 5 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 6 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 6 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 6 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CU 101 ? 4 'binding site for residue CU A 101' AC2 Software A CA 102 ? 3 'binding site for residue CA A 102' AC3 Software A 2OP 103 ? 7 'binding site for residue 2OP A 103' AC4 Software B CU 101 ? 4 'binding site for residue CU B 101' AC5 Software B CU 102 ? 6 'binding site for residue CU B 102' AC6 Software B 2OP 103 ? 8 'binding site for residue 2OP B 103' AC7 Software C CU 101 ? 2 'binding site for residue CU C 101' AC8 Software C CA 102 ? 5 'binding site for residue CA C 102' AC9 Software D SIN 101 ? 13 'binding site for residue SIN D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DG A 2 ? DG A 2 . ? 1_555 ? 2 AC1 4 2OP G . ? 2OP A 103 . ? 1_555 ? 3 AC1 4 DG D 2 ? DG D 2 . ? 1_555 ? 4 AC1 4 SIN M . ? SIN D 101 . ? 1_555 ? 5 AC2 3 DG A 2 ? DG A 2 . ? 1_555 ? 6 AC2 3 HOH N . ? HOH A 206 . ? 1_555 ? 7 AC2 3 DG C 2 ? DG C 2 . ? 1_655 ? 8 AC3 7 DG A 2 ? DG A 2 . ? 1_555 ? 9 AC3 7 CU E . ? CU A 101 . ? 1_555 ? 10 AC3 7 HOH N . ? HOH A 210 . ? 1_555 ? 11 AC3 7 HOH N . ? HOH A 228 . ? 1_555 ? 12 AC3 7 DC D 1 ? DC D 1 . ? 1_555 ? 13 AC3 7 DG D 2 ? DG D 2 . ? 1_555 ? 14 AC3 7 SIN M . ? SIN D 101 . ? 1_555 ? 15 AC4 4 DG B 2 ? DG B 2 . ? 1_555 ? 16 AC4 4 2OP J . ? 2OP B 103 . ? 1_555 ? 17 AC4 4 DG C 2 ? DG C 2 . ? 1_555 ? 18 AC4 4 SIN M . ? SIN D 101 . ? 1_555 ? 19 AC5 6 DC B 5 ? DC B 5 . ? 1_555 ? 20 AC5 6 DG B 6 ? DG B 6 . ? 1_555 ? 21 AC5 6 HOH O . ? HOH B 202 . ? 1_555 ? 22 AC5 6 HOH O . ? HOH B 205 . ? 1_555 ? 23 AC5 6 HOH O . ? HOH B 206 . ? 1_555 ? 24 AC5 6 DG D 6 ? DG D 6 . ? 1_655 ? 25 AC6 8 DC B 1 ? DC B 1 . ? 1_555 ? 26 AC6 8 DG B 2 ? DG B 2 . ? 1_555 ? 27 AC6 8 CU H . ? CU B 101 . ? 1_555 ? 28 AC6 8 HOH O . ? HOH B 212 . ? 1_555 ? 29 AC6 8 HOH O . ? HOH B 223 . ? 1_555 ? 30 AC6 8 DC C 1 ? DC C 1 . ? 1_555 ? 31 AC6 8 DG C 2 ? DG C 2 . ? 1_555 ? 32 AC6 8 SIN M . ? SIN D 101 . ? 1_555 ? 33 AC7 2 DG C 4 ? DG C 4 . ? 1_555 ? 34 AC7 2 HOH P . ? HOH C 215 . ? 1_555 ? 35 AC8 5 DG A 2 ? DG A 2 . ? 1_455 ? 36 AC8 5 HOH N . ? HOH A 213 . ? 1_455 ? 37 AC8 5 HOH N . ? HOH A 216 . ? 1_455 ? 38 AC8 5 DG C 2 ? DG C 2 . ? 1_555 ? 39 AC8 5 HOH P . ? HOH C 214 . ? 1_555 ? 40 AC9 13 DG A 2 ? DG A 2 . ? 1_555 ? 41 AC9 13 DC A 3 ? DC A 3 . ? 1_555 ? 42 AC9 13 CU E . ? CU A 101 . ? 1_555 ? 43 AC9 13 2OP G . ? 2OP A 103 . ? 1_555 ? 44 AC9 13 DG B 2 ? DG B 2 . ? 1_555 ? 45 AC9 13 DC B 3 ? DC B 3 . ? 1_555 ? 46 AC9 13 CU H . ? CU B 101 . ? 1_555 ? 47 AC9 13 2OP J . ? 2OP B 103 . ? 1_555 ? 48 AC9 13 DG C 2 ? DG C 2 . ? 1_555 ? 49 AC9 13 DC C 3 ? DC C 3 . ? 1_555 ? 50 AC9 13 DG D 2 ? DG D 2 . ? 1_555 ? 51 AC9 13 DC D 3 ? DC D 3 . ? 1_555 ? 52 AC9 13 HOH Q . ? HOH D 212 . ? 1_555 ? # _atom_sites.entry_id 4XQY _atom_sites.fract_transf_matrix[1][1] 0.036381 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011471 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028109 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033776 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA CU N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DC 3 3 3 DC DC B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 DG 6 6 6 DG DG B . n C 1 1 DC 1 1 1 DC DC C . n C 1 2 DG 2 2 2 DG DG C . n C 1 3 DC 3 3 3 DC DC C . n C 1 4 DG 4 4 4 DG DG C . n C 1 5 DC 5 5 5 DC DC C . n C 1 6 DG 6 6 6 DG DG C . n D 1 1 DC 1 1 1 DC DC D . n D 1 2 DG 2 2 2 DG DG D . n D 1 3 DC 3 3 3 DC DC D . n D 1 4 DG 4 4 4 DG DG D . n D 1 5 DC 5 5 5 DC DC D . n D 1 6 DG 6 6 6 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CU 1 101 2 CU CU A . F 3 CA 1 102 6 CA CA A . G 4 2OP 1 103 1 2OP 2OP A . H 2 CU 1 101 1 CU CU B . I 2 CU 1 102 3 CU CU B . J 4 2OP 1 103 2 2OP 2OP B . K 2 CU 1 101 4 CU CU C . L 3 CA 1 102 5 CA CA C . M 5 SIN 1 101 3 SIN SIN D . N 6 HOH 1 201 232 HOH HOH A . N 6 HOH 2 202 240 HOH HOH A . N 6 HOH 3 203 156 HOH HOH A . N 6 HOH 4 204 198 HOH HOH A . N 6 HOH 5 205 164 HOH HOH A . N 6 HOH 6 206 209 HOH HOH A . N 6 HOH 7 207 135 HOH HOH A . N 6 HOH 8 208 216 HOH HOH A . N 6 HOH 9 209 220 HOH HOH A . N 6 HOH 10 210 211 HOH HOH A . N 6 HOH 11 211 214 HOH HOH A . N 6 HOH 12 212 248 HOH HOH A . N 6 HOH 13 213 207 HOH HOH A . N 6 HOH 14 214 249 HOH HOH A . N 6 HOH 15 215 145 HOH HOH A . N 6 HOH 16 216 197 HOH HOH A . N 6 HOH 17 217 186 HOH HOH A . N 6 HOH 18 218 238 HOH HOH A . N 6 HOH 19 219 246 HOH HOH A . N 6 HOH 20 220 188 HOH HOH A . N 6 HOH 21 221 123 HOH HOH A . N 6 HOH 22 222 172 HOH HOH A . N 6 HOH 23 223 244 HOH HOH A . N 6 HOH 24 224 120 HOH HOH A . N 6 HOH 25 225 122 HOH HOH A . N 6 HOH 26 226 143 HOH HOH A . N 6 HOH 27 227 146 HOH HOH A . N 6 HOH 28 228 151 HOH HOH A . N 6 HOH 29 229 154 HOH HOH A . N 6 HOH 30 230 167 HOH HOH A . N 6 HOH 31 231 173 HOH HOH A . N 6 HOH 32 232 177 HOH HOH A . N 6 HOH 33 233 189 HOH HOH A . N 6 HOH 34 234 191 HOH HOH A . N 6 HOH 35 235 192 HOH HOH A . N 6 HOH 36 236 218 HOH HOH A . N 6 HOH 37 237 247 HOH HOH A . O 6 HOH 1 201 130 HOH HOH B . O 6 HOH 2 202 201 HOH HOH B . O 6 HOH 3 203 213 HOH HOH B . O 6 HOH 4 204 212 HOH HOH B . O 6 HOH 5 205 204 HOH HOH B . O 6 HOH 6 206 144 HOH HOH B . O 6 HOH 7 207 225 HOH HOH B . O 6 HOH 8 208 100 HOH HOH B . O 6 HOH 9 209 170 HOH HOH B . O 6 HOH 10 210 116 HOH HOH B . O 6 HOH 11 211 105 HOH HOH B . O 6 HOH 12 212 153 HOH HOH B . O 6 HOH 13 213 155 HOH HOH B . O 6 HOH 14 214 125 HOH HOH B . O 6 HOH 15 215 245 HOH HOH B . O 6 HOH 16 216 102 HOH HOH B . O 6 HOH 17 217 106 HOH HOH B . O 6 HOH 18 218 111 HOH HOH B . O 6 HOH 19 219 137 HOH HOH B . O 6 HOH 20 220 141 HOH HOH B . O 6 HOH 21 221 165 HOH HOH B . O 6 HOH 22 222 171 HOH HOH B . O 6 HOH 23 223 179 HOH HOH B . O 6 HOH 24 224 234 HOH HOH B . O 6 HOH 25 225 235 HOH HOH B . O 6 HOH 26 226 250 HOH HOH B . P 6 HOH 1 201 196 HOH HOH C . P 6 HOH 2 202 117 HOH HOH C . P 6 HOH 3 203 142 HOH HOH C . P 6 HOH 4 204 226 HOH HOH C . P 6 HOH 5 205 193 HOH HOH C . P 6 HOH 6 206 219 HOH HOH C . P 6 HOH 7 207 119 HOH HOH C . P 6 HOH 8 208 110 HOH HOH C . P 6 HOH 9 209 133 HOH HOH C . P 6 HOH 10 210 107 HOH HOH C . P 6 HOH 11 211 215 HOH HOH C . P 6 HOH 12 212 108 HOH HOH C . P 6 HOH 13 213 101 HOH HOH C . P 6 HOH 14 214 206 HOH HOH C . P 6 HOH 15 215 202 HOH HOH C . P 6 HOH 16 216 152 HOH HOH C . P 6 HOH 17 217 129 HOH HOH C . P 6 HOH 18 218 200 HOH HOH C . P 6 HOH 19 219 190 HOH HOH C . P 6 HOH 20 220 182 HOH HOH C . P 6 HOH 21 221 183 HOH HOH C . P 6 HOH 22 222 114 HOH HOH C . P 6 HOH 23 223 118 HOH HOH C . P 6 HOH 24 224 134 HOH HOH C . P 6 HOH 25 225 149 HOH HOH C . P 6 HOH 26 226 166 HOH HOH C . P 6 HOH 27 227 221 HOH HOH C . P 6 HOH 28 228 222 HOH HOH C . P 6 HOH 29 229 224 HOH HOH C . Q 6 HOH 1 201 181 HOH HOH D . Q 6 HOH 2 202 140 HOH HOH D . Q 6 HOH 3 203 112 HOH HOH D . Q 6 HOH 4 204 138 HOH HOH D . Q 6 HOH 5 205 131 HOH HOH D . Q 6 HOH 6 206 147 HOH HOH D . Q 6 HOH 7 207 157 HOH HOH D . Q 6 HOH 8 208 139 HOH HOH D . Q 6 HOH 9 209 203 HOH HOH D . Q 6 HOH 10 210 163 HOH HOH D . Q 6 HOH 11 211 180 HOH HOH D . Q 6 HOH 12 212 132 HOH HOH D . Q 6 HOH 13 213 150 HOH HOH D . Q 6 HOH 14 214 128 HOH HOH D . Q 6 HOH 15 215 126 HOH HOH D . Q 6 HOH 16 216 185 HOH HOH D . Q 6 HOH 17 217 210 HOH HOH D . Q 6 HOH 18 218 148 HOH HOH D . Q 6 HOH 19 219 208 HOH HOH D . Q 6 HOH 20 220 121 HOH HOH D . Q 6 HOH 21 221 205 HOH HOH D . Q 6 HOH 22 222 243 HOH HOH D . Q 6 HOH 23 223 199 HOH HOH D . Q 6 HOH 24 224 161 HOH HOH D . Q 6 HOH 25 225 178 HOH HOH D . Q 6 HOH 26 226 187 HOH HOH D . Q 6 HOH 27 227 184 HOH HOH D . Q 6 HOH 28 228 124 HOH HOH D . Q 6 HOH 29 229 103 HOH HOH D . Q 6 HOH 30 230 104 HOH HOH D . Q 6 HOH 31 231 109 HOH HOH D . Q 6 HOH 32 232 115 HOH HOH D . Q 6 HOH 33 233 127 HOH HOH D . Q 6 HOH 34 234 158 HOH HOH D . Q 6 HOH 35 235 160 HOH HOH D . Q 6 HOH 36 236 162 HOH HOH D . Q 6 HOH 37 237 168 HOH HOH D . Q 6 HOH 38 238 176 HOH HOH D . Q 6 HOH 39 239 194 HOH HOH D . Q 6 HOH 40 240 217 HOH HOH D . Q 6 HOH 41 241 228 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,N,O 2 1 C,D,K,L,M,P,Q # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 790 ? 1 MORE -15 ? 1 'SSA (A^2)' 2560 ? 2 'ABSA (A^2)' 770 ? 2 MORE -15 ? 2 'SSA (A^2)' 2440 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 O ? N HOH . ? A HOH 206 ? 1_555 89.3 ? 2 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 OP2 ? C DG 2 ? C DG 2 ? 1_555 43.5 ? 3 O ? N HOH . ? A HOH 206 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 OP2 ? C DG 2 ? C DG 2 ? 1_555 49.1 ? 4 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 OP1 A D DC 3 ? D DC 3 ? 1_555 63.7 ? 5 O ? N HOH . ? A HOH 206 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 OP1 A D DC 3 ? D DC 3 ? 1_555 40.9 ? 6 OP2 ? C DG 2 ? C DG 2 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 OP1 A D DC 3 ? D DC 3 ? 1_555 46.4 ? 7 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 OP2 B D DC 3 ? D DC 3 ? 1_555 61.8 ? 8 O ? N HOH . ? A HOH 206 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 OP2 B D DC 3 ? D DC 3 ? 1_555 42.2 ? 9 OP2 ? C DG 2 ? C DG 2 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 OP2 B D DC 3 ? D DC 3 ? 1_555 45.5 ? 10 OP1 A D DC 3 ? D DC 3 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 OP2 B D DC 3 ? D DC 3 ? 1_555 1.9 ? 11 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 O ? Q HOH . ? D HOH 217 ? 2_555 175.7 ? 12 O ? N HOH . ? A HOH 206 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 O ? Q HOH . ? D HOH 217 ? 2_555 88.2 ? 13 OP2 ? C DG 2 ? C DG 2 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 O ? Q HOH . ? D HOH 217 ? 2_555 135.2 ? 14 OP1 A D DC 3 ? D DC 3 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 O ? Q HOH . ? D HOH 217 ? 2_555 112.3 ? 15 OP2 B D DC 3 ? D DC 3 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 O ? Q HOH . ? D HOH 217 ? 2_555 114.1 ? 16 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 O ? Q HOH . ? D HOH 219 ? 2_555 101.8 ? 17 O ? N HOH . ? A HOH 206 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 O ? Q HOH . ? D HOH 219 ? 2_555 168.7 ? 18 OP2 ? C DG 2 ? C DG 2 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 O ? Q HOH . ? D HOH 219 ? 2_555 140.6 ? 19 OP1 A D DC 3 ? D DC 3 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 O ? Q HOH . ? D HOH 219 ? 2_555 147.2 ? 20 OP2 B D DC 3 ? D DC 3 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 O ? Q HOH . ? D HOH 219 ? 2_555 146.3 ? 21 O ? Q HOH . ? D HOH 217 ? 2_555 CA ? F CA . ? A CA 102 ? 1_555 O ? Q HOH . ? D HOH 219 ? 2_555 80.9 ? 22 N7 ? A DG 2 ? A DG 2 ? 1_555 CU ? E CU . ? A CU 101 ? 1_555 N7 ? D DG 2 ? D DG 2 ? 1_555 159.1 ? 23 N7 ? A DG 2 ? A DG 2 ? 1_555 CU ? E CU . ? A CU 101 ? 1_555 OHN ? G 2OP . ? A 2OP 103 ? 1_555 97.3 ? 24 N7 ? D DG 2 ? D DG 2 ? 1_555 CU ? E CU . ? A CU 101 ? 1_555 OHN ? G 2OP . ? A 2OP 103 ? 1_555 103.4 ? 25 N7 ? A DG 2 ? A DG 2 ? 1_555 CU ? E CU . ? A CU 101 ? 1_555 OXT ? G 2OP . ? A 2OP 103 ? 1_555 90.4 ? 26 N7 ? D DG 2 ? D DG 2 ? 1_555 CU ? E CU . ? A CU 101 ? 1_555 OXT ? G 2OP . ? A 2OP 103 ? 1_555 90.9 ? 27 OHN ? G 2OP . ? A 2OP 103 ? 1_555 CU ? E CU . ? A CU 101 ? 1_555 OXT ? G 2OP . ? A 2OP 103 ? 1_555 77.9 ? 28 N7 ? A DG 2 ? A DG 2 ? 1_555 CU ? E CU . ? A CU 101 ? 1_555 O4 ? M SIN . ? D SIN 101 ? 1_555 87.4 ? 29 N7 ? D DG 2 ? D DG 2 ? 1_555 CU ? E CU . ? A CU 101 ? 1_555 O4 ? M SIN . ? D SIN 101 ? 1_555 89.0 ? 30 OHN ? G 2OP . ? A 2OP 103 ? 1_555 CU ? E CU . ? A CU 101 ? 1_555 O4 ? M SIN . ? D SIN 101 ? 1_555 108.5 ? 31 OXT ? G 2OP . ? A 2OP 103 ? 1_555 CU ? E CU . ? A CU 101 ? 1_555 O4 ? M SIN . ? D SIN 101 ? 1_555 173.5 ? 32 N7 ? B DG 2 ? B DG 2 ? 1_555 CU ? H CU . ? B CU 101 ? 1_555 N7 ? C DG 2 ? C DG 2 ? 1_555 156.5 ? 33 N7 ? B DG 2 ? B DG 2 ? 1_555 CU ? H CU . ? B CU 101 ? 1_555 O1 ? M SIN . ? D SIN 101 ? 1_555 90.6 ? 34 N7 ? C DG 2 ? C DG 2 ? 1_555 CU ? H CU . ? B CU 101 ? 1_555 O1 ? M SIN . ? D SIN 101 ? 1_555 85.5 ? 35 N7 ? B DG 2 ? B DG 2 ? 1_555 CU ? H CU . ? B CU 101 ? 1_555 O ? J 2OP . ? B 2OP 103 ? 1_555 90.7 ? 36 N7 ? C DG 2 ? C DG 2 ? 1_555 CU ? H CU . ? B CU 101 ? 1_555 O ? J 2OP . ? B 2OP 103 ? 1_555 90.8 ? 37 O1 ? M SIN . ? D SIN 101 ? 1_555 CU ? H CU . ? B CU 101 ? 1_555 O ? J 2OP . ? B 2OP 103 ? 1_555 173.7 ? 38 N7 ? B DG 2 ? B DG 2 ? 1_555 CU ? H CU . ? B CU 101 ? 1_555 OHN ? J 2OP . ? B 2OP 103 ? 1_555 102.9 ? 39 N7 ? C DG 2 ? C DG 2 ? 1_555 CU ? H CU . ? B CU 101 ? 1_555 OHN ? J 2OP . ? B 2OP 103 ? 1_555 100.0 ? 40 O1 ? M SIN . ? D SIN 101 ? 1_555 CU ? H CU . ? B CU 101 ? 1_555 OHN ? J 2OP . ? B 2OP 103 ? 1_555 111.6 ? 41 O ? J 2OP . ? B 2OP 103 ? 1_555 CU ? H CU . ? B CU 101 ? 1_555 OHN ? J 2OP . ? B 2OP 103 ? 1_555 74.1 ? 42 N7 ? B DG 6 ? B DG 6 ? 1_555 CU ? I CU . ? B CU 102 ? 1_555 O ? O HOH . ? B HOH 205 ? 1_555 91.2 ? 43 N7 ? B DG 6 ? B DG 6 ? 1_555 CU ? I CU . ? B CU 102 ? 1_555 O ? O HOH . ? B HOH 202 ? 1_555 102.1 ? 44 O ? O HOH . ? B HOH 205 ? 1_555 CU ? I CU . ? B CU 102 ? 1_555 O ? O HOH . ? B HOH 202 ? 1_555 156.6 ? 45 N7 ? B DG 6 ? B DG 6 ? 1_555 CU ? I CU . ? B CU 102 ? 1_555 O ? O HOH . ? B HOH 206 ? 1_555 115.2 ? 46 O ? O HOH . ? B HOH 205 ? 1_555 CU ? I CU . ? B CU 102 ? 1_555 O ? O HOH . ? B HOH 206 ? 1_555 78.2 ? 47 O ? O HOH . ? B HOH 202 ? 1_555 CU ? I CU . ? B CU 102 ? 1_555 O ? O HOH . ? B HOH 206 ? 1_555 112.2 ? 48 OP1 ? C DG 2 ? C DG 2 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 O ? P HOH . ? C HOH 214 ? 1_555 86.5 ? 49 OP1 ? C DG 2 ? C DG 2 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 OP2 ? A DG 2 ? A DG 2 ? 1_555 74.2 ? 50 O ? P HOH . ? C HOH 214 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 OP2 ? A DG 2 ? A DG 2 ? 1_555 69.1 ? 51 OP1 ? C DG 2 ? C DG 2 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 O ? N HOH . ? A HOH 213 ? 1_455 109.8 ? 52 O ? P HOH . ? C HOH 214 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 O ? N HOH . ? A HOH 213 ? 1_455 62.3 ? 53 OP2 ? A DG 2 ? A DG 2 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 O ? N HOH . ? A HOH 213 ? 1_455 130.6 ? 54 OP1 ? C DG 2 ? C DG 2 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 O ? N HOH . ? A HOH 216 ? 1_455 156.3 ? 55 O ? P HOH . ? C HOH 214 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 O ? N HOH . ? A HOH 216 ? 1_455 108.7 ? 56 OP2 ? A DG 2 ? A DG 2 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 O ? N HOH . ? A HOH 216 ? 1_455 93.8 ? 57 O ? N HOH . ? A HOH 213 ? 1_455 CA ? L CA . ? C CA 102 ? 1_555 O ? N HOH . ? A HOH 216 ? 1_455 93.5 ? 58 OP1 ? C DG 2 ? C DG 2 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 O ? Q HOH . ? D HOH 221 ? 2_455 91.8 ? 59 O ? P HOH . ? C HOH 214 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 O ? Q HOH . ? D HOH 221 ? 2_455 83.5 ? 60 OP2 ? A DG 2 ? A DG 2 ? 1_555 CA ? L CA . ? C CA 102 ? 1_555 O ? Q HOH . ? D HOH 221 ? 2_455 22.4 ? 61 O ? N HOH . ? A HOH 213 ? 1_455 CA ? L CA . ? C CA 102 ? 1_555 O ? Q HOH . ? D HOH 221 ? 2_455 137.1 ? 62 O ? N HOH . ? A HOH 216 ? 1_455 CA ? L CA . ? C CA 102 ? 1_555 O ? Q HOH . ? D HOH 221 ? 2_455 72.6 ? 63 N7 ? C DG 4 ? C DG 4 ? 1_555 CU ? K CU . ? C CU 101 ? 1_555 O ? P HOH . ? C HOH 215 ? 1_555 93.5 ? 64 N7 ? C DG 4 ? C DG 4 ? 1_555 CU ? K CU . ? C CU 101 ? 1_555 N7 ? D DG 6 ? D DG 6 ? 1_555 52.9 ? 65 O ? P HOH . ? C HOH 215 ? 1_555 CU ? K CU . ? C CU 101 ? 1_555 N7 ? D DG 6 ? D DG 6 ? 1_555 88.6 ? 66 N7 ? C DG 4 ? C DG 4 ? 1_555 CU ? K CU . ? C CU 101 ? 1_555 O ? O HOH . ? B HOH 205 ? 2_555 86.9 ? 67 O ? P HOH . ? C HOH 215 ? 1_555 CU ? K CU . ? C CU 101 ? 1_555 O ? O HOH . ? B HOH 205 ? 2_555 87.2 ? 68 N7 ? D DG 6 ? D DG 6 ? 1_555 CU ? K CU . ? C CU 101 ? 1_555 O ? O HOH . ? B HOH 205 ? 2_555 139.3 ? 69 N7 ? C DG 4 ? C DG 4 ? 1_555 CU ? K CU . ? C CU 101 ? 1_555 O ? Q HOH . ? D HOH 209 ? 2_455 93.2 ? 70 O ? P HOH . ? C HOH 215 ? 1_555 CU ? K CU . ? C CU 101 ? 1_555 O ? Q HOH . ? D HOH 209 ? 2_455 89.3 ? 71 N7 ? D DG 6 ? D DG 6 ? 1_555 CU ? K CU . ? C CU 101 ? 1_555 O ? Q HOH . ? D HOH 209 ? 2_455 40.5 ? 72 O ? O HOH . ? B HOH 205 ? 2_555 CU ? K CU . ? C CU 101 ? 1_555 O ? Q HOH . ? D HOH 209 ? 2_455 176.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-01-27 2 'Structure model' 1 1 2016-07-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.9_1692)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? X-Area ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O C HOH 206 ? ? O C HOH 221 ? ? 2.18 2 1 O D HOH 207 ? ? O D HOH 224 ? ? 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 2 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.380 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.039 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 D _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 3 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 D _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 3 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 D _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.20 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 1.90 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # _ndb_struct_conf_na.entry_id 4XQY _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.352 -0.136 0.035 7.155 -3.272 1.458 1 A_DC1:DG6_B A 1 ? B 6 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 0.300 -0.166 0.094 -4.828 3.108 1.463 2 A_DG2:DC5_B A 2 ? B 5 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.094 -0.025 0.060 5.127 -1.914 1.478 3 A_DC3:DG4_B A 3 ? B 4 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.290 -0.087 0.145 -2.743 -5.535 0.708 4 A_DG4:DC3_B A 4 ? B 3 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.245 -0.136 -0.200 3.104 -2.603 1.480 5 A_DC5:DG2_B A 5 ? B 2 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.225 -0.032 0.461 14.692 -6.717 -0.628 6 A_DG6:DC1_B A 6 ? B 1 ? 19 1 1 C DC 1 1_555 D DG 6 1_555 -0.153 -0.145 -0.120 0.355 -0.694 1.765 7 C_DC1:DG6_D C 1 ? D 6 ? 19 1 1 C DG 2 1_555 D DC 5 1_555 0.259 -0.144 0.082 2.950 1.038 2.105 8 C_DG2:DC5_D C 2 ? D 5 ? 19 1 1 C DC 3 1_555 D DG 4 1_555 -0.135 -0.125 -0.007 10.491 -2.715 1.703 9 C_DC3:DG4_D C 3 ? D 4 ? 19 1 1 C DG 4 1_555 D DC 3 1_555 0.283 -0.156 0.050 -1.232 -12.048 -1.478 10 C_DG4:DC3_D C 4 ? D 3 ? 19 1 1 C DC 5 1_555 D DG 2 1_555 -0.286 -0.077 -0.213 0.138 -8.466 -0.328 11 C_DC5:DG2_D C 5 ? D 2 ? 19 1 1 C DG 6 1_555 D DC 1 1_555 0.197 -0.148 0.228 5.298 4.016 -0.795 12 C_DG6:DC1_D C 6 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 0.122 5.379 3.813 2.737 -4.459 -8.862 -17.825 8.148 5.579 26.077 16.007 -10.288 1 AA_DC1DG2:DC5DG6_BB A 1 ? B 6 ? A 2 ? B 5 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 -0.207 -1.435 3.183 1.085 -6.791 -46.900 2.306 -0.175 2.964 8.479 1.354 -47.373 2 AA_DG2DC3:DG4DC5_BB A 2 ? B 5 ? A 3 ? B 4 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.202 5.432 3.729 -0.446 -2.683 -6.633 -29.160 -3.985 5.469 22.009 -3.656 -7.169 3 AA_DC3DG4:DC3DG4_BB A 3 ? B 4 ? A 4 ? B 3 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 0.177 -2.171 3.365 3.311 -5.965 -43.637 3.440 0.542 3.037 7.967 4.422 -44.141 4 AA_DG4DC5:DG2DC3_BB A 4 ? B 3 ? A 5 ? B 2 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.513 5.217 3.264 -0.463 0.554 -12.152 -25.272 -2.978 3.002 -2.612 -2.183 -12.173 5 AA_DC5DG6:DC1DG2_BB A 5 ? B 2 ? A 6 ? B 1 ? 1 C DC 1 1_555 D DG 6 1_555 C DG 2 1_555 D DC 5 1_555 0.094 5.230 3.385 2.075 -4.833 -7.988 -16.807 6.821 5.447 30.694 13.179 -9.562 6 CC_DC1DG2:DC5DG6_DD C 1 ? D 6 ? C 2 ? D 5 ? 1 C DG 2 1_555 D DC 5 1_555 C DC 3 1_555 D DG 4 1_555 -0.347 -1.199 3.280 -0.550 -6.193 -46.516 2.008 -0.480 3.101 7.800 -0.693 -46.907 7 CC_DG2DC3:DG4DC5_DD C 2 ? D 5 ? C 3 ? D 4 ? 1 C DC 3 1_555 D DG 4 1_555 C DG 4 1_555 D DC 3 1_555 -0.505 5.368 3.741 -0.767 -5.412 -6.402 -11.747 -6.958 6.249 40.129 -5.687 -8.416 8 CC_DC3DG4:DC3DG4_DD C 3 ? D 4 ? C 4 ? D 3 ? 1 C DG 4 1_555 D DC 3 1_555 C DC 5 1_555 D DG 2 1_555 0.034 -2.251 3.535 2.654 -7.454 -44.016 3.660 0.294 3.126 9.851 3.507 -44.687 9 CC_DG4DC5:DG2DC3_DD C 4 ? D 3 ? C 5 ? D 2 ? 1 C DC 5 1_555 D DG 2 1_555 C DG 6 1_555 D DC 1 1_555 0.208 5.282 3.427 2.427 -1.848 -13.568 -19.763 3.558 4.006 7.695 10.105 -13.905 10 CC_DC5DG6:DC1DG2_DD C 5 ? D 2 ? C 6 ? D 1 ? # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number . _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COPPER (II) ION' CU 3 'CALCIUM ION' CA 4 '(2S)-2-HYDROXYPROPANOIC ACID' 2OP 5 'SUCCINIC ACID' SIN 6 water HOH #