HEADER REPLICATION/DNA 20-JAN-15 4XR1 TITLE ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED WITH TITLE 2 DNA- AG/AT MISMATCH. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPLICATION TERMINUS SITE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TER-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*G)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: TERA COMPLEMENTARY STRAND; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*GP*TP*AP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)- COMPND 14 3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES; COMPND 18 OTHER_DETAILS: TERA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: TUS, TAU, B1610, JW1602; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCM862; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 562; SOURCE 14 OTHER_DETAILS: TER; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 18 ORGANISM_TAXID: 562 KEYWDS DNA COMPLEX, REPLICATION, TUS, TER, REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.OAKLEY REVDAT 5 27-SEP-23 4XR1 1 REMARK REVDAT 4 01-JAN-20 4XR1 1 JRNL REMARK REVDAT 3 30-SEP-15 4XR1 1 JRNL REVDAT 2 16-SEP-15 4XR1 1 JRNL REVDAT 1 26-AUG-15 4XR1 0 JRNL AUTH M.M.ELSHENAWY,S.JERGIC,Z.Q.XU,M.A.SOBHY,M.TAKAHASHI, JRNL AUTH 2 A.J.OAKLEY,N.E.DIXON,S.M.HAMDAN JRNL TITL REPLISOME SPEED DETERMINES THE EFFICIENCY OF THE TUS-TER JRNL TITL 2 REPLICATION TERMINATION BARRIER. JRNL REF NATURE V. 525 394 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26322585 JRNL DOI 10.1038/NATURE14866 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1435 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2505 REMARK 3 NUCLEIC ACID ATOMS : 574 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.319 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.482 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3241 ; 0.017 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4522 ; 2.125 ; 1.782 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 7.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;38.808 ;23.459 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 462 ;20.209 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;20.817 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 478 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2281 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1236 ; 4.757 ; 4.197 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1546 ; 6.516 ; 6.277 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2005 ; 6.180 ; 4.446 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4846 ; 9.946 ;37.616 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 1007 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2030 -25.3835 -15.0207 REMARK 3 T TENSOR REMARK 3 T11: 0.2168 T22: 0.2265 REMARK 3 T33: 0.0288 T12: -0.0254 REMARK 3 T13: 0.0193 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.8548 L22: 0.8368 REMARK 3 L33: 2.7220 L12: -0.1419 REMARK 3 L13: -0.2277 L23: -0.4045 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: -0.0019 S13: 0.1208 REMARK 3 S21: 0.0870 S22: -0.0010 S23: -0.0905 REMARK 3 S31: -0.0477 S32: 0.2180 S33: 0.0201 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 311 B 324 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0482 -27.6824 -8.7791 REMARK 3 T TENSOR REMARK 3 T11: 0.2713 T22: 0.2377 REMARK 3 T33: 0.0772 T12: -0.0106 REMARK 3 T13: -0.0360 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 7.3054 L22: 3.7946 REMARK 3 L33: 1.9110 L12: -1.0483 REMARK 3 L13: -1.9830 L23: -1.9318 REMARK 3 S TENSOR REMARK 3 S11: 0.1404 S12: -0.3737 S13: -0.2657 REMARK 3 S21: 0.1100 S22: -0.2755 S23: -0.1173 REMARK 3 S31: -0.0528 S32: 0.3119 S33: 0.1350 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 328 C 342 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9210 -28.7412 -7.9565 REMARK 3 T TENSOR REMARK 3 T11: 0.1865 T22: 0.1969 REMARK 3 T33: 0.0177 T12: 0.0187 REMARK 3 T13: 0.0394 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.9819 L22: 4.2558 REMARK 3 L33: 3.8405 L12: 0.0479 REMARK 3 L13: -0.9506 L23: -0.2296 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: -0.2317 S13: -0.1647 REMARK 3 S21: 0.1529 S22: 0.0273 S23: 0.0994 REMARK 3 S31: 0.0809 S32: 0.0209 S33: 0.0317 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4XR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 - 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21577 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 75.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.71100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2I06 REMARK 200 REMARK 200 REMARK: BIPYRAMIDS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-12% (V/V) PEG 3350, 100 MM NAI, 50 REMARK 280 MM BIS-TRIS, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.35300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.40550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.40550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.67650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.40550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.40550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 185.02950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.40550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.40550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.67650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.40550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.40550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 185.02950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.35300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 DT B 310 REMARK 465 DT B 325 REMARK 465 DT C 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 4 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 DT B 311 P OP1 OP2 REMARK 470 DG C 328 P OP1 OP2 O5' C5' C4' O4' REMARK 470 DG C 328 C3' C2' C1' N9 C8 N7 C5 REMARK 470 DG C 328 C6 O6 N1 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 217 O HOH A 1101 1.90 REMARK 500 O LEU A 194 N SER A 196 2.03 REMARK 500 OP2 DA B 316 O HOH B 409 2.15 REMARK 500 O HOH B 409 O HOH B 410 2.16 REMARK 500 NE ARG A 75 O HOH A 1162 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 9 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU A 71 CB - CG - CD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 218 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 232 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 232 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 297 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ILE A 299 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 302 CG - CD - NE ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 302 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 302 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 DA B 318 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA B 323 C1' - O4' - C4' ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 83 159.24 -48.69 REMARK 500 GLN A 189 -48.11 -29.21 REMARK 500 LEU A 194 -144.89 -76.70 REMARK 500 LYS A 195 34.63 -42.45 REMARK 500 SER A 196 -62.80 -109.89 REMARK 500 PRO A 197 -99.55 -88.58 REMARK 500 ARG A 198 -104.38 -157.48 REMARK 500 SER A 199 -155.98 -138.03 REMARK 500 VAL A 200 -130.82 -161.78 REMARK 500 ALA A 201 -104.70 -85.75 REMARK 500 PRO A 202 20.10 -69.54 REMARK 500 ASN A 284 42.93 -153.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 1007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ECR RELATED DB: PDB REMARK 900 ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED REMARK 900 WITH DNA REMARK 900 RELATED ID: 2EWJ RELATED DB: PDB REMARK 900 ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED REMARK 900 WITH DNA REMARK 900 RELATED ID: 2I05 RELATED DB: PDB REMARK 900 ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED REMARK 900 WITH DNA REMARK 900 RELATED ID: 2I06 RELATED DB: PDB REMARK 900 ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED REMARK 900 WITH DNA- LOCKED FORM REMARK 900 RELATED ID: 4XR0 RELATED DB: PDB REMARK 900 RELATED ID: 4XR2 RELATED DB: PDB REMARK 900 RELATED ID: 4XR3 RELATED DB: PDB DBREF 4XR1 A 1 309 UNP P16525 TUS_ECOLI 1 309 DBREF 4XR1 B 310 325 PDB 4XR1 4XR1 310 325 DBREF 4XR1 C 327 342 PDB 4XR1 4XR1 327 342 SEQADV 4XR1 MET A -6 UNP P16525 INITIATING METHIONINE SEQADV 4XR1 HIS A -5 UNP P16525 EXPRESSION TAG SEQADV 4XR1 HIS A -4 UNP P16525 EXPRESSION TAG SEQADV 4XR1 HIS A -3 UNP P16525 EXPRESSION TAG SEQADV 4XR1 HIS A -2 UNP P16525 EXPRESSION TAG SEQADV 4XR1 HIS A -1 UNP P16525 EXPRESSION TAG SEQADV 4XR1 HIS A 0 UNP P16525 EXPRESSION TAG SEQRES 1 A 316 MET HIS HIS HIS HIS HIS HIS MET ALA ARG TYR ASP LEU SEQRES 2 A 316 VAL ASP ARG LEU ASN THR THR PHE ARG GLN MET GLU GLN SEQRES 3 A 316 GLU LEU ALA ILE PHE ALA ALA HIS LEU GLU GLN HIS LYS SEQRES 4 A 316 LEU LEU VAL ALA ARG VAL PHE SER LEU PRO GLU VAL LYS SEQRES 5 A 316 LYS GLU ASP GLU HIS ASN PRO LEU ASN ARG ILE GLU VAL SEQRES 6 A 316 LYS GLN HIS LEU GLY ASN ASP ALA GLN SER LEU ALA LEU SEQRES 7 A 316 ARG HIS PHE ARG HIS LEU PHE ILE GLN GLN GLN SER GLU SEQRES 8 A 316 ASN ARG SER SER LYS ALA ALA VAL ARG LEU PRO GLY VAL SEQRES 9 A 316 LEU CYS TYR GLN VAL ASP ASN LEU SER GLN ALA ALA LEU SEQRES 10 A 316 VAL SER HIS ILE GLN HIS ILE ASN LYS LEU LYS THR THR SEQRES 11 A 316 PHE GLU HIS ILE VAL THR VAL GLU SER GLU LEU PRO THR SEQRES 12 A 316 ALA ALA ARG PHE GLU TRP VAL HIS ARG HIS LEU PRO GLY SEQRES 13 A 316 LEU ILE THR LEU ASN ALA TYR ARG THR LEU THR VAL LEU SEQRES 14 A 316 HIS ASP PRO ALA THR LEU ARG PHE GLY TRP ALA ASN LYS SEQRES 15 A 316 HIS ILE ILE LYS ASN LEU HIS ARG ASP GLU VAL LEU ALA SEQRES 16 A 316 GLN LEU GLU LYS SER LEU LYS SER PRO ARG SER VAL ALA SEQRES 17 A 316 PRO TRP THR ARG GLU GLU TRP GLN ARG LYS LEU GLU ARG SEQRES 18 A 316 GLU TYR GLN ASP ILE ALA ALA LEU PRO GLN ASN ALA LYS SEQRES 19 A 316 LEU LYS ILE LYS ARG PRO VAL LYS VAL GLN PRO ILE ALA SEQRES 20 A 316 ARG VAL TRP TYR LYS GLY ASP GLN LYS GLN VAL GLN HIS SEQRES 21 A 316 ALA CYS PRO THR PRO LEU ILE ALA LEU ILE ASN ARG ASP SEQRES 22 A 316 ASN GLY ALA GLY VAL PRO ASP VAL GLY GLU LEU LEU ASN SEQRES 23 A 316 TYR ASP ALA ASP ASN VAL GLN HIS ARG TYR LYS PRO GLN SEQRES 24 A 316 ALA GLN PRO LEU ARG LEU ILE ILE PRO ARG LEU HIS LEU SEQRES 25 A 316 TYR VAL ALA ASP SEQRES 1 B 16 DT DT DA DG DT DT DA DC DA DA DC DA DT SEQRES 2 B 16 DA DG DT SEQRES 1 C 16 DT DG DT DA DA DT DG DT DT DG DT DA DA SEQRES 2 C 16 DC DT DA HET IOD A1001 1 HET IOD A1002 1 HET IOD A1003 1 HET IOD A1004 1 HET IOD A1005 1 HET IOD A1006 1 HET MPD A1007 8 HETNAM IOD IODIDE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 4 IOD 6(I 1-) FORMUL 10 MPD C6 H14 O2 FORMUL 11 HOH *96(H2 O) HELIX 1 AA1 ARG A 3 GLU A 29 1 27 HELIX 2 AA2 LYS A 45 GLU A 49 5 5 HELIX 3 AA3 GLY A 63 ARG A 75 1 13 HELIX 4 AA4 PHE A 78 GLN A 82 5 5 HELIX 5 AA5 ASP A 103 VAL A 130 1 28 HELIX 6 AA6 PRO A 135 ALA A 137 5 3 HELIX 7 AA7 ALA A 138 LEU A 147 1 10 HELIX 8 AA8 ILE A 151 ARG A 157 1 7 HELIX 9 AA9 HIS A 182 LEU A 194 1 13 HELIX 10 AB1 THR A 204 ALA A 221 1 18 HELIX 11 AB2 ASP A 266 GLY A 268 5 3 SHEET 1 AA1 5 LYS A 59 LEU A 62 0 SHEET 2 AA1 5 LEU A 33 SER A 40 -1 N SER A 40 O LYS A 59 SHEET 3 AA1 5 GLY A 96 VAL A 102 -1 O CYS A 99 N VAL A 35 SHEET 4 AA1 5 LEU A 259 ASN A 264 1 O ALA A 261 N LEU A 98 SHEET 5 AA1 5 VAL A 161 HIS A 163 1 N LEU A 162 O LEU A 262 SHEET 1 AA2 2 ARG A 55 ILE A 56 0 SHEET 2 AA2 2 TYR A 280 ASP A 281 -1 O TYR A 280 N ILE A 56 SHEET 1 AA3 4 VAL A 251 ALA A 254 0 SHEET 2 AA3 4 GLN A 237 TRP A 243 -1 N ALA A 240 O HIS A 253 SHEET 3 AA3 4 THR A 167 ALA A 173 -1 N GLY A 171 O ILE A 239 SHEET 4 AA3 4 ASP A 273 VAL A 274 1 O ASP A 273 N LEU A 168 SHEET 1 AA4 4 HIS A 176 LEU A 181 0 SHEET 2 AA4 4 LEU A 228 PRO A 233 -1 O LEU A 228 N LEU A 181 SHEET 3 AA4 4 LEU A 305 ALA A 308 -1 O TYR A 306 N LYS A 229 SHEET 4 AA4 4 LEU A 296 ILE A 300 -1 N ARG A 297 O VAL A 307 SITE 1 AC1 1 GLN A 224 SITE 1 AC2 2 GLN A 30 ARG A 297 SITE 1 AC3 2 ILE A 177 ARG A 232 SITE 1 AC4 1 ALA A 36 SITE 1 AC5 2 TRP A 142 HIS A 146 SITE 1 AC6 1 ARG A 15 SITE 1 AC7 4 GLU A 125 DA B 319 DC B 320 HOH C 403 CRYST1 64.811 64.811 246.706 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004053 0.00000