HEADER TRANSFERASE 20-JAN-15 4XR5 TITLE X-RAY STRUCTURE OF THE UNLIGANDED THYMIDINE PHOSPHORYLASE FROM TITLE 2 SALMONELLA TYPHIMURIUM AT 2.05 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE PHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TDRPASE; COMPND 5 EC: 2.4.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: DEOA, STM4568; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THYMIDINE PHOSPHORYLASE, NUCLEOSIDE, METABOLISM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.V.BALAEV,A.A.LASHKOV,A.G.GABDULKHAKOV,C.BETZEL,A.M.MIKHAILOV REVDAT 3 10-JAN-24 4XR5 1 REMARK REVDAT 2 09-MAR-16 4XR5 1 JRNL REVDAT 1 27-JAN-16 4XR5 0 JRNL AUTH V.V.BALAEV,A.A.LASHKOV,A.G.GABDULKHAKOV,M.V.DONTSOVA, JRNL AUTH 2 T.A.SEREGINA,A.S.MIRONOV,C.BETZEL,A.M.MIKHAILOV JRNL TITL STRUCTURAL INVESTIGATION OF THE THYMIDINE PHOSPHORYLASE FROM JRNL TITL 2 SALMONELLA TYPHIMURIUM IN THE UNLIGANDED STATE AND ITS JRNL TITL 3 COMPLEXES WITH THYMIDINE AND URIDINE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 224 2016 JRNL REFN ESSN 2053-230X JRNL PMID 26919527 JRNL DOI 10.1107/S2053230X1600162X REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9-1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 54666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7285 - 5.5618 0.92 2720 144 0.1644 0.1736 REMARK 3 2 5.5618 - 4.4156 0.92 2587 136 0.1602 0.2148 REMARK 3 3 4.4156 - 3.8577 0.93 2583 136 0.1612 0.1808 REMARK 3 4 3.8577 - 3.5051 0.95 2617 137 0.1842 0.2069 REMARK 3 5 3.5051 - 3.2539 0.95 2589 137 0.2115 0.2443 REMARK 3 6 3.2539 - 3.0621 0.95 2600 137 0.2373 0.2449 REMARK 3 7 3.0621 - 2.9088 0.95 2605 137 0.2562 0.2547 REMARK 3 8 2.9088 - 2.7822 0.96 2580 135 0.2656 0.2909 REMARK 3 9 2.7822 - 2.6751 0.98 2638 139 0.2784 0.3124 REMARK 3 10 2.6751 - 2.5828 0.95 2594 137 0.2843 0.3257 REMARK 3 11 2.5828 - 2.5020 0.97 2612 137 0.2810 0.3204 REMARK 3 12 2.5020 - 2.4305 0.95 2583 136 0.2962 0.3151 REMARK 3 13 2.4305 - 2.3665 0.97 2583 137 0.2949 0.3515 REMARK 3 14 2.3665 - 2.3088 0.96 2584 136 0.3011 0.3253 REMARK 3 15 2.3088 - 2.2563 0.97 2560 134 0.3193 0.3751 REMARK 3 16 2.2563 - 2.2083 0.94 2550 134 0.3140 0.3371 REMARK 3 17 2.2083 - 2.1641 0.98 2604 138 0.3258 0.3637 REMARK 3 18 2.1641 - 2.1233 0.95 2560 134 0.3270 0.3577 REMARK 3 19 2.1233 - 2.0854 0.97 2573 136 0.3377 0.3541 REMARK 3 20 2.0854 - 2.0500 0.97 2609 138 0.3363 0.3863 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6717 REMARK 3 ANGLE : 1.275 9072 REMARK 3 CHIRALITY : 0.051 1051 REMARK 3 PLANARITY : 0.006 1185 REMARK 3 DIHEDRAL : 16.280 2476 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3906 38.8613 -23.8302 REMARK 3 T TENSOR REMARK 3 T11: 0.3383 T22: 0.3887 REMARK 3 T33: 0.5464 T12: -0.0173 REMARK 3 T13: 0.0087 T23: 0.1999 REMARK 3 L TENSOR REMARK 3 L11: 1.5055 L22: 0.9957 REMARK 3 L33: 0.3018 L12: -0.9764 REMARK 3 L13: -0.3595 L23: 0.1695 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: 0.3512 S13: 0.3401 REMARK 3 S21: -0.1675 S22: -0.0638 S23: -0.1934 REMARK 3 S31: -0.0898 S32: -0.0193 S33: -0.0103 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4923 44.1390 -20.3310 REMARK 3 T TENSOR REMARK 3 T11: 0.3697 T22: 0.4014 REMARK 3 T33: 0.5381 T12: -0.0329 REMARK 3 T13: 0.0022 T23: 0.1991 REMARK 3 L TENSOR REMARK 3 L11: 1.3163 L22: 0.9428 REMARK 3 L33: 0.1980 L12: -0.7586 REMARK 3 L13: -0.0655 L23: 0.6302 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: 0.3971 S13: 0.1210 REMARK 3 S21: -0.1100 S22: 0.0502 S23: -0.1641 REMARK 3 S31: -0.0318 S32: 0.0428 S33: 0.0046 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 440 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8811 46.8830 -12.7494 REMARK 3 T TENSOR REMARK 3 T11: 0.3411 T22: 0.2910 REMARK 3 T33: 0.4972 T12: -0.0006 REMARK 3 T13: 0.0210 T23: 0.1924 REMARK 3 L TENSOR REMARK 3 L11: 2.5738 L22: 1.2430 REMARK 3 L33: 1.0103 L12: 0.3809 REMARK 3 L13: 0.4936 L23: 0.2020 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: 0.0472 S13: 0.1872 REMARK 3 S21: 0.1440 S22: 0.0182 S23: 0.0586 REMARK 3 S31: 0.0019 S32: -0.0586 S33: 0.0218 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2127 2.7152 -32.4342 REMARK 3 T TENSOR REMARK 3 T11: 0.3556 T22: 0.3968 REMARK 3 T33: 0.3428 T12: -0.0081 REMARK 3 T13: 0.0437 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.4601 L22: 1.3344 REMARK 3 L33: 0.5482 L12: -0.3667 REMARK 3 L13: 0.0799 L23: 0.5476 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.5634 S13: -0.1830 REMARK 3 S21: 0.0129 S22: -0.0848 S23: 0.4332 REMARK 3 S31: 0.1505 S32: -0.0729 S33: 0.0565 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8334 -5.7204 -50.3018 REMARK 3 T TENSOR REMARK 3 T11: 0.5072 T22: 1.0152 REMARK 3 T33: 0.4493 T12: -0.0108 REMARK 3 T13: -0.0442 T23: -0.1739 REMARK 3 L TENSOR REMARK 3 L11: 1.4635 L22: 0.4831 REMARK 3 L33: 1.1625 L12: -0.7246 REMARK 3 L13: -0.3926 L23: -0.3866 REMARK 3 S TENSOR REMARK 3 S11: 0.2466 S12: 0.3133 S13: 0.1177 REMARK 3 S21: -0.1279 S22: -0.3098 S23: 0.4627 REMARK 3 S31: -0.1129 S32: -0.1350 S33: 0.0471 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3867 3.3694 -31.4014 REMARK 3 T TENSOR REMARK 3 T11: 0.3637 T22: 0.4122 REMARK 3 T33: 0.2743 T12: 0.0144 REMARK 3 T13: 0.0286 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.5786 L22: 1.4338 REMARK 3 L33: 0.5649 L12: -1.2584 REMARK 3 L13: -0.4844 L23: -0.5197 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: 0.4905 S13: 0.2788 REMARK 3 S21: -0.0509 S22: 0.0277 S23: 0.1182 REMARK 3 S31: -0.0710 S32: -0.0149 S33: 0.0329 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 231 THROUGH 440 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7062 -1.8392 -43.3605 REMARK 3 T TENSOR REMARK 3 T11: 0.3988 T22: 0.6334 REMARK 3 T33: 0.1612 T12: 0.0488 REMARK 3 T13: -0.0157 T23: -0.0570 REMARK 3 L TENSOR REMARK 3 L11: 3.2896 L22: 1.0404 REMARK 3 L33: 0.5968 L12: 0.6158 REMARK 3 L13: -0.1067 L23: 0.2502 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: 1.0796 S13: -0.0332 REMARK 3 S21: -0.2383 S22: 0.0111 S23: 0.0847 REMARK 3 S31: -0.0194 S32: -0.0942 S33: -0.0031 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XR5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58911 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 47.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.02100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4X46 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM THIOCYANATE, 0.1 M BIS REMARK 280 TRIS PROPANE, 20% W/V PEG3350, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.47100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 85.60650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.47100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 85.60650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 157 OG SER A 159 1.88 REMARK 500 OG SER B 249 OE1 GLU B 258 2.12 REMARK 500 O HOH B 634 O HOH B 635 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 601 O HOH B 601 2655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 -154.82 57.98 REMARK 500 ASN A 76 66.05 39.38 REMARK 500 SER A 113 -167.90 -123.13 REMARK 500 SER A 158 -9.30 120.37 REMARK 500 ALA A 161 52.17 31.75 REMARK 500 ASN A 252 -75.01 -115.55 REMARK 500 LYS A 321 32.37 73.97 REMARK 500 ASP A 394 -168.09 -164.18 REMARK 500 ASN B 32 -8.71 73.16 REMARK 500 ASP B 50 -145.31 54.67 REMARK 500 MET B 97 -60.04 -92.62 REMARK 500 ASN B 252 -73.01 -108.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 2 LEU A 3 146.28 REMARK 500 PHE B 2 LEU B 3 148.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4X46 RELATED DB: PDB REMARK 900 4X46 CONTAINS THE SAME PROTEIN COMPLEXED WITH SULPHATE ION. DBREF 4XR5 A 1 440 UNP Q7CP66 TYPH_SALTY 1 440 DBREF 4XR5 B 1 440 UNP Q7CP66 TYPH_SALTY 1 440 SEQRES 1 A 440 MET PHE LEU ALA GLN GLU ILE ILE ARG LYS LYS ARG ASP SEQRES 2 A 440 GLY HIS ALA LEU SER ASP GLU GLU ILE ARG PHE PHE ILE SEQRES 3 A 440 ASN GLY ILE ARG ASP ASN THR ILE SER GLU GLY GLN ILE SEQRES 4 A 440 ALA ALA LEU ALA MET THR ILE PHE PHE HIS ASP MET THR SEQRES 5 A 440 MET PRO GLU ARG VAL SER LEU THR MET ALA MET ARG ASP SEQRES 6 A 440 SER GLY THR VAL LEU ASP TRP LYS SER LEU ASN LEU ASN SEQRES 7 A 440 GLY PRO ILE VAL ASP LYS HIS SER THR GLY GLY VAL GLY SEQRES 8 A 440 ASP VAL THR SER LEU MET LEU GLY PRO MET VAL ALA ALA SEQRES 9 A 440 CYS GLY GLY TYR VAL PRO MET ILE SER GLY ARG GLY LEU SEQRES 10 A 440 GLY HIS THR GLY GLY THR LEU ASP LYS LEU GLU ALA ILE SEQRES 11 A 440 PRO GLY PHE ASP ILE PHE PRO ASP ASP ASN ARG PHE ARG SEQRES 12 A 440 GLU ILE ILE GLN ASP VAL GLY VAL ALA ILE ILE GLY GLN SEQRES 13 A 440 THR SER SER LEU ALA PRO ALA ASP LYS ARG PHE TYR ALA SEQRES 14 A 440 THR ARG ASP ILE THR ALA THR VAL ASP SER ILE PRO LEU SEQRES 15 A 440 ILE THR GLY SER ILE LEU ALA LYS LYS LEU ALA GLU GLY SEQRES 16 A 440 LEU ASP ALA LEU VAL MET ASP VAL LYS VAL GLY SER GLY SEQRES 17 A 440 ALA PHE MET PRO THR TYR GLU LEU SER GLU ALA LEU ALA SEQRES 18 A 440 GLU ALA ILE VAL GLY VAL ALA ASN GLY ALA GLY VAL ARG SEQRES 19 A 440 THR THR ALA LEU LEU THR ASP MET ASN GLN VAL LEU ALA SEQRES 20 A 440 SER SER ALA GLY ASN ALA VAL GLU VAL ARG GLU ALA VAL SEQRES 21 A 440 GLN PHE LEU THR GLY GLU TYR ARG ASN PRO ARG LEU PHE SEQRES 22 A 440 ASP VAL THR MET ALA LEU CYS VAL GLU MET LEU ILE SER SEQRES 23 A 440 GLY GLN LEU ALA LYS ASP ASP ALA GLU ALA ARG ALA LYS SEQRES 24 A 440 LEU GLN ALA VAL LEU ASP ASN GLY LYS ALA ALA GLU VAL SEQRES 25 A 440 PHE GLY ARG MET VAL ALA ALA GLN LYS GLY PRO SER ASP SEQRES 26 A 440 PHE VAL GLU ASN TYR ASP LYS TYR LEU PRO THR ALA MET SEQRES 27 A 440 LEU SER LYS ALA VAL TYR ALA ASP THR GLU GLY PHE ILE SEQRES 28 A 440 SER ALA MET ASP THR ARG ALA LEU GLY MET ALA VAL VAL SEQRES 29 A 440 SER MET GLY GLY GLY ARG ARG GLN ALA SER ASP THR ILE SEQRES 30 A 440 ASP TYR SER VAL GLY PHE THR ASP MET ALA ARG LEU GLY SEQRES 31 A 440 ASP SER ILE ASP GLY GLN ARG PRO LEU ALA VAL ILE HIS SEQRES 32 A 440 ALA LYS ASP GLU ALA SER TRP GLN GLU ALA ALA LYS ALA SEQRES 33 A 440 VAL LYS ALA ALA ILE ILE LEU ASP ASP LYS ALA PRO ALA SEQRES 34 A 440 SER THR PRO SER VAL TYR ARG ARG ILE THR GLU SEQRES 1 B 440 MET PHE LEU ALA GLN GLU ILE ILE ARG LYS LYS ARG ASP SEQRES 2 B 440 GLY HIS ALA LEU SER ASP GLU GLU ILE ARG PHE PHE ILE SEQRES 3 B 440 ASN GLY ILE ARG ASP ASN THR ILE SER GLU GLY GLN ILE SEQRES 4 B 440 ALA ALA LEU ALA MET THR ILE PHE PHE HIS ASP MET THR SEQRES 5 B 440 MET PRO GLU ARG VAL SER LEU THR MET ALA MET ARG ASP SEQRES 6 B 440 SER GLY THR VAL LEU ASP TRP LYS SER LEU ASN LEU ASN SEQRES 7 B 440 GLY PRO ILE VAL ASP LYS HIS SER THR GLY GLY VAL GLY SEQRES 8 B 440 ASP VAL THR SER LEU MET LEU GLY PRO MET VAL ALA ALA SEQRES 9 B 440 CYS GLY GLY TYR VAL PRO MET ILE SER GLY ARG GLY LEU SEQRES 10 B 440 GLY HIS THR GLY GLY THR LEU ASP LYS LEU GLU ALA ILE SEQRES 11 B 440 PRO GLY PHE ASP ILE PHE PRO ASP ASP ASN ARG PHE ARG SEQRES 12 B 440 GLU ILE ILE GLN ASP VAL GLY VAL ALA ILE ILE GLY GLN SEQRES 13 B 440 THR SER SER LEU ALA PRO ALA ASP LYS ARG PHE TYR ALA SEQRES 14 B 440 THR ARG ASP ILE THR ALA THR VAL ASP SER ILE PRO LEU SEQRES 15 B 440 ILE THR GLY SER ILE LEU ALA LYS LYS LEU ALA GLU GLY SEQRES 16 B 440 LEU ASP ALA LEU VAL MET ASP VAL LYS VAL GLY SER GLY SEQRES 17 B 440 ALA PHE MET PRO THR TYR GLU LEU SER GLU ALA LEU ALA SEQRES 18 B 440 GLU ALA ILE VAL GLY VAL ALA ASN GLY ALA GLY VAL ARG SEQRES 19 B 440 THR THR ALA LEU LEU THR ASP MET ASN GLN VAL LEU ALA SEQRES 20 B 440 SER SER ALA GLY ASN ALA VAL GLU VAL ARG GLU ALA VAL SEQRES 21 B 440 GLN PHE LEU THR GLY GLU TYR ARG ASN PRO ARG LEU PHE SEQRES 22 B 440 ASP VAL THR MET ALA LEU CYS VAL GLU MET LEU ILE SER SEQRES 23 B 440 GLY GLN LEU ALA LYS ASP ASP ALA GLU ALA ARG ALA LYS SEQRES 24 B 440 LEU GLN ALA VAL LEU ASP ASN GLY LYS ALA ALA GLU VAL SEQRES 25 B 440 PHE GLY ARG MET VAL ALA ALA GLN LYS GLY PRO SER ASP SEQRES 26 B 440 PHE VAL GLU ASN TYR ASP LYS TYR LEU PRO THR ALA MET SEQRES 27 B 440 LEU SER LYS ALA VAL TYR ALA ASP THR GLU GLY PHE ILE SEQRES 28 B 440 SER ALA MET ASP THR ARG ALA LEU GLY MET ALA VAL VAL SEQRES 29 B 440 SER MET GLY GLY GLY ARG ARG GLN ALA SER ASP THR ILE SEQRES 30 B 440 ASP TYR SER VAL GLY PHE THR ASP MET ALA ARG LEU GLY SEQRES 31 B 440 ASP SER ILE ASP GLY GLN ARG PRO LEU ALA VAL ILE HIS SEQRES 32 B 440 ALA LYS ASP GLU ALA SER TRP GLN GLU ALA ALA LYS ALA SEQRES 33 B 440 VAL LYS ALA ALA ILE ILE LEU ASP ASP LYS ALA PRO ALA SEQRES 34 B 440 SER THR PRO SER VAL TYR ARG ARG ILE THR GLU HET PGE A 501 10 HET PGE A 502 10 HET CL B 501 1 HET PEG B 502 7 HET PGE B 503 10 HETNAM PGE TRIETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PGE 3(C6 H14 O4) FORMUL 5 CL CL 1- FORMUL 6 PEG C4 H10 O3 FORMUL 8 HOH *89(H2 O) HELIX 1 AA1 LEU A 3 ASP A 13 1 11 HELIX 2 AA2 SER A 18 ASP A 31 1 14 HELIX 3 AA3 SER A 35 ASP A 50 1 16 HELIX 4 AA4 THR A 52 SER A 66 1 15 HELIX 5 AA5 TRP A 72 ASN A 76 5 5 HELIX 6 AA6 THR A 94 ALA A 104 1 11 HELIX 7 AA7 GLY A 122 GLU A 128 1 7 HELIX 8 AA8 ASP A 138 VAL A 149 1 12 HELIX 9 AA9 PRO A 162 THR A 174 1 13 HELIX 10 AB1 SER A 179 ALA A 193 1 15 HELIX 11 AB2 THR A 213 ALA A 231 1 19 HELIX 12 AB3 ASN A 252 THR A 264 1 13 HELIX 13 AB4 ASN A 269 SER A 286 1 18 HELIX 14 AB5 ASP A 292 ASN A 306 1 15 HELIX 15 AB6 GLY A 307 GLN A 320 1 14 HELIX 16 AB7 ASP A 325 LEU A 334 1 10 HELIX 17 AB8 ASP A 355 GLY A 367 1 13 HELIX 18 AB9 ASP A 406 ALA A 420 1 15 HELIX 19 AC1 LEU B 3 ASP B 13 1 11 HELIX 20 AC2 SER B 18 ASP B 31 1 14 HELIX 21 AC3 SER B 35 ASP B 50 1 16 HELIX 22 AC4 THR B 52 ASP B 65 1 14 HELIX 23 AC5 VAL B 93 ALA B 104 1 12 HELIX 24 AC6 GLY B 122 GLU B 128 1 7 HELIX 25 AC7 ASP B 138 VAL B 149 1 12 HELIX 26 AC8 ALA B 163 THR B 174 1 12 HELIX 27 AC9 SER B 179 ALA B 193 1 15 HELIX 28 AD1 THR B 213 ALA B 231 1 19 HELIX 29 AD2 ASN B 252 GLY B 265 1 14 HELIX 30 AD3 ASN B 269 GLY B 287 1 19 HELIX 31 AD4 ASP B 292 ASN B 306 1 15 HELIX 32 AD5 GLY B 307 GLN B 320 1 14 HELIX 33 AD6 ASP B 325 LEU B 334 1 10 HELIX 34 AD7 ASP B 355 GLY B 367 1 13 HELIX 35 AD8 ASP B 406 ALA B 420 1 15 SHEET 1 AA1 4 VAL A 82 SER A 86 0 SHEET 2 AA1 4 ALA A 198 VAL A 205 1 O ASP A 202 N HIS A 85 SHEET 3 AA1 4 ARG A 234 ASP A 241 1 O LEU A 238 N VAL A 203 SHEET 4 AA1 4 VAL A 434 ILE A 438 -1 O TYR A 435 N LEU A 239 SHEET 1 AA2 2 VAL A 109 SER A 113 0 SHEET 2 AA2 2 VAL A 151 GLY A 155 1 O ILE A 154 N SER A 113 SHEET 1 AA3 4 ALA A 250 GLY A 251 0 SHEET 2 AA3 4 GLY A 382 THR A 384 -1 O PHE A 383 N ALA A 250 SHEET 3 AA3 4 ALA A 400 ALA A 404 -1 O HIS A 403 N GLY A 382 SHEET 4 AA3 4 LEU A 339 VAL A 343 -1 N VAL A 343 O ALA A 400 SHEET 1 AA4 3 SER A 392 ILE A 393 0 SHEET 2 AA4 3 GLY A 349 MET A 354 -1 N GLY A 349 O ILE A 393 SHEET 3 AA4 3 ILE A 421 ASP A 424 -1 O ASP A 424 N PHE A 350 SHEET 1 AA5 4 VAL B 82 SER B 86 0 SHEET 2 AA5 4 ALA B 198 VAL B 205 1 O ASP B 202 N HIS B 85 SHEET 3 AA5 4 ARG B 234 ASP B 241 1 O LEU B 238 N MET B 201 SHEET 4 AA5 4 VAL B 434 ILE B 438 -1 O TYR B 435 N LEU B 239 SHEET 1 AA6 2 VAL B 109 ILE B 112 0 SHEET 2 AA6 2 VAL B 151 ILE B 154 1 O ILE B 154 N MET B 111 SHEET 1 AA7 4 ALA B 250 GLY B 251 0 SHEET 2 AA7 4 GLY B 382 THR B 384 -1 O PHE B 383 N ALA B 250 SHEET 3 AA7 4 ALA B 400 ALA B 404 -1 O HIS B 403 N GLY B 382 SHEET 4 AA7 4 LEU B 339 VAL B 343 -1 N VAL B 343 O ALA B 400 SHEET 1 AA8 3 SER B 392 ILE B 393 0 SHEET 2 AA8 3 GLY B 349 MET B 354 -1 N GLY B 349 O ILE B 393 SHEET 3 AA8 3 ILE B 421 ASP B 424 -1 O ILE B 422 N ALA B 353 SITE 1 AC1 3 HIS A 15 LYS A 332 TYR A 333 SITE 1 AC2 5 SER A 249 ARG A 257 GLU A 258 GLN A 261 SITE 2 AC2 5 ASP A 385 SITE 1 AC3 1 ARG B 268 SITE 1 AC4 2 ASP B 71 SER B 74 SITE 1 AC5 3 LYS B 332 LEU B 334 THR B 336 CRYST1 114.942 171.213 45.343 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008700 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022054 0.00000