HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 21-JAN-15 4XS3 TITLE CRYSTAL STRUCTURE OF A METABOLIC REDUCTASE WITH (E)-1-BENZYL-5-((1- TITLE 2 METHYL-5-OXO-2-THIOXOIMIDAZOLIDIN-4-YLIDENE)METHYL)PYRIDIN-2(1H)-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IDH,CYTOSOLIC NADP-ISOCITRATE DEHYDROGENASE,IDP,NADP(+)- COMPND 5 SPECIFIC ICDH,OXALOSUCCINATE DECARBOXYLASE; COMPND 6 EC: 1.1.1.42; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IDH1, PICD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-KG KEYWDS OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHENG,F.WU,H.JIANG,M.KOGISO,Y.YAO,C.ZHOU,X.LI,Y.SONG REVDAT 5 28-FEB-24 4XS3 1 REMARK REVDAT 4 18-DEC-19 4XS3 1 REMARK REVDAT 3 24-APR-19 4XS3 1 REMARK REVDAT 2 13-SEP-17 4XS3 1 JRNL REMARK REVDAT 1 27-JUL-16 4XS3 0 JRNL AUTH F.WU,H.JIANG,B.ZHENG,M.KOGISO,Y.YAO,C.ZHOU,X.N.LI,Y.SONG JRNL TITL INHIBITION OF CANCER-ASSOCIATED MUTANT ISOCITRATE JRNL TITL 2 DEHYDROGENASES BY 2-THIOHYDANTOIN COMPOUNDS. JRNL REF J.MED.CHEM. V. 58 6899 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26280302 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00684 REMARK 2 REMARK 2 RESOLUTION. 3.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 15404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9267 - 5.9745 0.90 2623 113 0.2280 0.2350 REMARK 3 2 5.9745 - 4.7444 0.99 2669 149 0.2140 0.2859 REMARK 3 3 4.7444 - 4.1454 0.98 2593 147 0.2097 0.2664 REMARK 3 4 4.1454 - 3.7666 1.00 2637 140 0.2338 0.3094 REMARK 3 5 3.7666 - 3.4968 0.97 2566 148 0.2430 0.3085 REMARK 3 6 3.4968 - 3.2907 0.59 1532 87 0.2493 0.3403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6344 REMARK 3 ANGLE : 0.987 8563 REMARK 3 CHIRALITY : 0.033 925 REMARK 3 PLANARITY : 0.004 1078 REMARK 3 DIHEDRAL : 14.308 2371 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16627 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.291 REMARK 200 RESOLUTION RANGE LOW (A) : 40.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM NADPH AND 10 MM CACL2 IN A REMARK 280 SOLUTION OF 1.75 M (NH4)2SO4 AND 0.1 M NAAC (PH 5.6), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K, EVAPORATION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 153.29950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.29300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.29300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 229.94925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.29300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.29300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.64975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.29300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.29300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 229.94925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.29300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.29300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.64975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 153.29950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 120 REMARK 465 VAL A 121 REMARK 465 SER A 122 REMARK 465 GLY A 123 REMARK 465 TRP A 124 REMARK 465 VAL A 125 REMARK 465 ALA A 134 REMARK 465 TYR A 135 REMARK 465 GLY A 136 REMARK 465 ASP A 137 REMARK 465 GLN A 138 REMARK 465 ASN A 271 REMARK 465 TYR A 272 REMARK 465 ASP A 273 REMARK 465 GLY A 274 REMARK 465 ASP A 275 REMARK 465 VAL A 276 REMARK 465 GLN A 277 REMARK 465 SER A 278 REMARK 465 ASP A 279 REMARK 465 SER A 280 REMARK 465 VAL A 281 REMARK 465 ALA A 282 REMARK 465 GLN A 283 REMARK 465 GLY A 284 REMARK 465 TYR A 285 REMARK 465 GLY A 286 REMARK 465 LYS A 413 REMARK 465 LEU A 414 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 120 REMARK 465 VAL B 121 REMARK 465 SER B 122 REMARK 465 GLY B 123 REMARK 465 TRP B 124 REMARK 465 ALA B 134 REMARK 465 TYR B 135 REMARK 465 GLY B 136 REMARK 465 ASP B 137 REMARK 465 GLN B 138 REMARK 465 TYR B 139 REMARK 465 ARG B 140 REMARK 465 LYS B 270 REMARK 465 ASN B 271 REMARK 465 TYR B 272 REMARK 465 ASP B 273 REMARK 465 GLY B 274 REMARK 465 ASP B 275 REMARK 465 VAL B 276 REMARK 465 GLN B 277 REMARK 465 SER B 278 REMARK 465 ASP B 279 REMARK 465 SER B 280 REMARK 465 VAL B 281 REMARK 465 ALA B 282 REMARK 465 GLN B 283 REMARK 465 GLY B 284 REMARK 465 TYR B 285 REMARK 465 GLY B 286 REMARK 465 LEU B 414 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N THR B 75 O7N NAP B 502 1.77 REMARK 500 O ASN B 328 N6A NAP B 502 2.15 REMARK 500 NZ LYS B 260 N7A NAP A 502 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 -136.23 57.75 REMARK 500 LEU A 30 -31.56 -132.69 REMARK 500 ASP A 54 10.87 55.93 REMARK 500 ASN A 68 -35.78 73.00 REMARK 500 ASP A 79 -155.79 -118.36 REMARK 500 ASP A 160 35.27 -84.70 REMARK 500 ASN A 184 119.20 -170.23 REMARK 500 GLN A 234 -50.42 -146.82 REMARK 500 TYR A 235 -129.17 -108.84 REMARK 500 LYS A 236 -49.30 59.99 REMARK 500 GLN A 242 19.02 -144.22 REMARK 500 MET A 259 6.80 -68.91 REMARK 500 LYS A 260 32.45 -141.16 REMARK 500 SER A 326 80.26 -154.72 REMARK 500 SER A 389 2.18 -64.29 REMARK 500 GLU B 17 -137.38 57.90 REMARK 500 LEU B 30 -32.04 -133.48 REMARK 500 ILE B 31 -60.64 -105.36 REMARK 500 ASP B 54 10.03 56.75 REMARK 500 ASN B 68 -35.87 71.99 REMARK 500 ASP B 79 -155.34 -120.43 REMARK 500 VAL B 146 98.28 64.59 REMARK 500 ASN B 184 119.18 -168.95 REMARK 500 ASN B 213 -28.03 57.73 REMARK 500 GLN B 234 -40.56 -143.34 REMARK 500 GLN B 242 21.63 -143.69 REMARK 500 MET B 259 7.07 -66.89 REMARK 500 LYS B 260 33.64 -141.38 REMARK 500 SER B 326 81.58 -154.08 REMARK 500 SER B 389 3.74 -63.48 REMARK 500 ALA B 412 1.54 -69.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 42W A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 42W B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XRX RELATED DB: PDB DBREF 4XS3 A 1 414 UNP O75874 IDHC_HUMAN 1 414 DBREF 4XS3 B 1 414 UNP O75874 IDHC_HUMAN 1 414 SEQADV 4XS3 HIS A 132 UNP O75874 ARG 132 ENGINEERED MUTATION SEQADV 4XS3 HIS B 132 UNP O75874 ARG 132 ENGINEERED MUTATION SEQRES 1 A 414 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 A 414 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 A 414 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 A 414 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 A 414 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 A 414 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 A 414 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 A 414 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 A 414 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 A 414 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 A 414 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 A 414 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 A 414 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 A 414 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 A 414 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 A 414 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 A 414 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 A 414 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 A 414 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 A 414 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 A 414 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 A 414 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 A 414 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 A 414 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 A 414 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 A 414 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 A 414 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 A 414 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 A 414 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 A 414 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 A 414 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 A 414 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU SEQRES 1 B 414 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 B 414 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 B 414 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 B 414 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 B 414 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 B 414 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 B 414 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 B 414 TRP LYS SER PRO ASN GLY THR ILE ARG ASN ILE LEU GLY SEQRES 9 B 414 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 B 414 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 B 414 GLY HIS HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 B 414 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 B 414 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 B 414 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 B 414 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 B 414 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 B 414 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 B 414 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 B 414 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 B 414 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 B 414 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 B 414 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 B 414 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 B 414 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 B 414 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 B 414 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 B 414 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 B 414 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 B 414 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 B 414 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 B 414 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 B 414 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU HET 42W A 501 23 HET NAP A 502 48 HET 42W B 501 23 HET NAP B 502 48 HETNAM 42W (E)-1-BENZYL-5-((1-METHYL-5-OXO-2-THIOXOIMIDAZOLIDIN-4- HETNAM 2 42W YLIDENE)METHYL)PYRIDIN-2(1H)-ONE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN 42W 1-BENZYL-5-[(E)-(1-METHYL-5-OXO-2-THIOXOIMIDAZOLIDIN-4- HETSYN 2 42W YLIDENE)METHYL]PYRIDIN-2(1H)-ONE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 42W 2(C17 H15 N3 O2 S) FORMUL 4 NAP 2(C21 H28 N7 O17 P3) HELIX 1 AA1 ASP A 16 ILE A 31 1 16 HELIX 2 AA2 GLY A 45 THR A 52 1 8 HELIX 3 AA3 ASP A 54 ASN A 68 1 15 HELIX 4 AA4 ASP A 79 LYS A 87 1 9 HELIX 5 AA5 SER A 94 GLY A 104 1 11 HELIX 6 AA6 ASP A 186 GLY A 204 1 19 HELIX 7 AA7 LEU A 216 LYS A 233 1 18 HELIX 8 AA8 LYS A 236 ALA A 241 1 6 HELIX 9 AA9 ILE A 251 MET A 259 1 9 HELIX 10 AB1 SER A 287 GLY A 289 5 3 HELIX 11 AB2 VAL A 312 LYS A 321 1 10 HELIX 12 AB3 PRO A 329 ASN A 348 1 20 HELIX 13 AB4 ASN A 349 ALA A 369 1 21 HELIX 14 AB5 THR A 373 GLY A 382 1 10 HELIX 15 AB6 LEU A 383 VAL A 386 5 4 HELIX 16 AB7 GLN A 387 TYR A 391 5 5 HELIX 17 AB8 ASN A 393 ALA A 412 1 20 HELIX 18 AB9 ASP B 16 ILE B 31 1 16 HELIX 19 AC1 GLY B 45 ASN B 53 1 9 HELIX 20 AC2 ASP B 54 ASN B 68 1 15 HELIX 21 AC3 ASP B 79 LYS B 87 1 9 HELIX 22 AC4 SER B 94 GLY B 104 1 11 HELIX 23 AC5 ASP B 186 GLY B 204 1 19 HELIX 24 AC6 LEU B 216 TYR B 235 1 20 HELIX 25 AC7 TYR B 235 ALA B 241 1 7 HELIX 26 AC8 ILE B 251 MET B 259 1 9 HELIX 27 AC9 SER B 287 GLY B 289 5 3 HELIX 28 AD1 VAL B 312 LYS B 321 1 10 HELIX 29 AD2 PRO B 329 ASN B 348 1 20 HELIX 30 AD3 ASN B 349 ALA B 369 1 21 HELIX 31 AD4 THR B 373 GLY B 382 1 10 HELIX 32 AD5 LEU B 383 VAL B 386 5 4 HELIX 33 AD6 GLN B 387 TYR B 391 5 5 HELIX 34 AD7 ASN B 393 ALA B 412 1 20 SHEET 1 AA110 VAL A 35 ASP A 43 0 SHEET 2 AA110 ILE A 5 GLN A 14 1 N GLY A 7 O GLU A 36 SHEET 3 AA110 VAL A 69 LYS A 72 1 O VAL A 69 N VAL A 11 SHEET 4 AA110 VAL A 303 ALA A 307 1 O ALA A 305 N LYS A 72 SHEET 5 AA110 MET A 291 VAL A 296 -1 N LEU A 295 O GLU A 304 SHEET 6 AA110 THR A 106 ALA A 111 -1 N THR A 106 O VAL A 296 SHEET 7 AA110 ILE A 128 HIS A 132 -1 O ILE A 130 N ARG A 109 SHEET 8 AA110 PHE A 265 CYS A 269 1 O TRP A 267 N ILE A 129 SHEET 9 AA110 LEU A 207 THR A 211 1 N TYR A 208 O ALA A 268 SHEET 10 AA110 TYR A 246 LEU A 250 1 O ARG A 249 N LEU A 209 SHEET 1 AA2 4 THR A 142 VAL A 146 0 SHEET 2 AA2 4 GLY A 177 GLN A 185 -1 O ALA A 179 N PHE A 144 SHEET 3 AA2 4 GLY B 177 GLN B 185 -1 O MET B 182 N MET A 180 SHEET 4 AA2 4 THR B 142 PHE B 144 -1 N PHE B 144 O ALA B 179 SHEET 1 AA3 4 VAL A 165 PHE A 172 0 SHEET 2 AA3 4 GLY A 150 PRO A 158 -1 N VAL A 152 O HIS A 170 SHEET 3 AA3 4 GLY B 150 PRO B 158 -1 O THR B 155 N GLU A 153 SHEET 4 AA3 4 VAL B 165 PHE B 172 -1 O PHE B 172 N GLY B 150 SHEET 1 AA410 VAL B 35 ASP B 43 0 SHEET 2 AA410 ILE B 5 GLN B 14 1 N GLY B 7 O GLU B 36 SHEET 3 AA410 VAL B 69 LYS B 72 1 O VAL B 71 N VAL B 11 SHEET 4 AA410 VAL B 303 ALA B 307 1 O ALA B 305 N LYS B 72 SHEET 5 AA410 MET B 291 VAL B 296 -1 N LEU B 295 O GLU B 304 SHEET 6 AA410 THR B 106 ALA B 111 -1 N THR B 106 O VAL B 296 SHEET 7 AA410 LYS B 126 HIS B 132 -1 O ILE B 130 N ARG B 109 SHEET 8 AA410 GLY B 263 ALA B 268 1 O TRP B 267 N GLY B 131 SHEET 9 AA410 LEU B 207 THR B 211 1 N TYR B 208 O ALA B 268 SHEET 10 AA410 TYR B 246 LEU B 250 1 O ARG B 249 N LEU B 209 SITE 1 AC1 5 THR A 77 SER A 94 ARG A 100 ASN A 101 SITE 2 AC1 5 NAP A 502 SITE 1 AC2 12 THR A 75 THR A 77 ARG A 82 HIS A 309 SITE 2 AC2 12 GLY A 310 THR A 311 THR A 313 ARG A 314 SITE 3 AC2 12 HIS A 315 42W A 501 ALA B 256 LYS B 260 SITE 1 AC3 5 THR B 77 LYS B 93 SER B 94 GLY B 97 SITE 2 AC3 5 ARG B 100 SITE 1 AC4 16 LYS B 72 ALA B 74 THR B 75 THR B 77 SITE 2 AC4 16 ASN B 96 GLY B 289 GLU B 306 HIS B 309 SITE 3 AC4 16 GLY B 310 THR B 311 VAL B 312 THR B 313 SITE 4 AC4 16 ARG B 314 HIS B 315 THR B 327 ASN B 328 CRYST1 82.586 82.586 306.599 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012109 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003262 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.976111 0.177647 -0.125094 4.51936 1 MTRIX2 2 0.157107 -0.974795 -0.158408 -68.54292 1 MTRIX3 2 -0.150081 0.134970 -0.979418 9.37655 1