HEADER TRANSFERASE 22-JAN-15 4XT0 TITLE CRYSTAL STRUCTURE OF BETA-ETHERASE LIGF FROM SPHINGOBIUM SP. STRAIN TITLE 2 SYK-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN LIGF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-243; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM SP. SYK-6; SOURCE 3 ORGANISM_TAXID: 627192; SOURCE 4 GENE: LIGF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVP67K KEYWDS BETA-ETHERASE, LIGNASE, LIGF, THIOREDOXIN, GLUTATHIONE, GST, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.E.HELMICH,C.A.BINGMAN,T.J.DONOHUE,G.N.PHILLIPS JR. REVDAT 6 28-FEB-24 4XT0 1 REMARK REVDAT 5 04-DEC-19 4XT0 1 REMARK REVDAT 4 22-NOV-17 4XT0 1 REMARK REVDAT 3 13-SEP-17 4XT0 1 REMARK REVDAT 2 16-MAR-16 4XT0 1 SOURCE JRNL REVDAT 1 03-FEB-16 4XT0 0 JRNL AUTH K.E.HELMICH,J.H.PEREIRA,D.L.GALL,R.A.HEINS,R.P.MCANDREW, JRNL AUTH 2 C.BINGMAN,K.DENG,K.C.HOLLAND,D.R.NOGUERA,B.A.SIMMONS, JRNL AUTH 3 K.L.SALE,J.RALPH,T.J.DONOHUE,P.D.ADAMS,G.N.PHILLIPS JRNL TITL STRUCTURAL BASIS OF STEREOSPECIFICITY IN THE BACTERIAL JRNL TITL 2 ENZYMATIC CLEAVAGE OF BETA-ARYL ETHER BONDS IN LIGNIN. JRNL REF J.BIOL.CHEM. V. 291 5234 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26637355 JRNL DOI 10.1074/JBC.M115.694307 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 18232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5007 - 3.9478 0.99 2720 150 0.1437 0.1825 REMARK 3 2 3.9478 - 3.1338 1.00 2570 159 0.1472 0.1981 REMARK 3 3 3.1338 - 2.7378 1.00 2554 128 0.1722 0.2366 REMARK 3 4 2.7378 - 2.4875 1.00 2540 135 0.1735 0.2717 REMARK 3 5 2.4875 - 2.3092 1.00 2498 156 0.1635 0.2274 REMARK 3 6 2.3092 - 2.1731 0.95 2377 126 0.1744 0.2320 REMARK 3 7 2.1731 - 2.0700 0.81 2010 109 0.1821 0.2631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2080 REMARK 3 ANGLE : 1.022 2808 REMARK 3 CHIRALITY : 0.042 284 REMARK 3 PLANARITY : 0.005 365 REMARK 3 DIHEDRAL : 14.593 779 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.0279 56.2311 67.3410 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.2779 REMARK 3 T33: 0.1119 T12: -0.0295 REMARK 3 T13: 0.0128 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 3.1876 L22: 3.4040 REMARK 3 L33: 2.8604 L12: 0.3269 REMARK 3 L13: -0.1314 L23: -1.3364 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: 0.7843 S13: 0.3031 REMARK 3 S21: -0.3971 S22: 0.1345 S23: 0.0602 REMARK 3 S31: 0.0518 S32: 0.1279 S33: -0.0192 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.7747 73.7205 75.5928 REMARK 3 T TENSOR REMARK 3 T11: 0.4203 T22: 0.1908 REMARK 3 T33: 0.4827 T12: -0.0168 REMARK 3 T13: 0.0671 T23: 0.1281 REMARK 3 L TENSOR REMARK 3 L11: 2.7345 L22: 2.5816 REMARK 3 L33: 1.5181 L12: 1.7471 REMARK 3 L13: -1.4951 L23: 0.3729 REMARK 3 S TENSOR REMARK 3 S11: 0.2970 S12: 0.4120 S13: 1.0177 REMARK 3 S21: 0.0059 S22: 0.1036 S23: 0.5025 REMARK 3 S31: -0.9339 S32: 0.0443 S33: -0.0354 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.3016 62.0312 78.9070 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.3469 REMARK 3 T33: 0.3336 T12: -0.1382 REMARK 3 T13: 0.0063 T23: 0.0957 REMARK 3 L TENSOR REMARK 3 L11: 2.4673 L22: 2.9884 REMARK 3 L33: 1.6290 L12: 0.2004 REMARK 3 L13: -0.8851 L23: 0.1713 REMARK 3 S TENSOR REMARK 3 S11: 0.0891 S12: 0.1413 S13: 0.3716 REMARK 3 S21: 0.0054 S22: -0.1434 S23: -0.6460 REMARK 3 S31: -0.5288 S32: 0.6965 S33: -0.1026 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000206127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18884 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 40.493 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 17.30 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL PROTEIN SOLUTION (10MM HEPES PH REMARK 280 7.5, 50MM NACL, 0.5MM TCEP, 1MM GLUTATHIONE) MIXED WITH 0.8 UL REMARK 280 OF THE WELL SOLUTION (25% MEPEG 2000, 0.2M TMAO, 0.1M BTP PH 9) REMARK 280 AND 0.2 UL OF A SUSPENSION OF LIGF MICRO-CRYSTALS (0.2M REMARK 280 MAGNESIUM FORMATE, 30% PEG 3350, 1MM GLUTATHIONE) CRYOPROTECTED REMARK 280 WITH 30% MEPEG 2000, 0.2M TMAO, 0.1M TRIS PH 8.5, 1MM REMARK 280 GLUTATHIONE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.20800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.20800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.20800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.20800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 33.20800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.20800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER, GENERATED FROM THE MONOMER REMARK 300 IN THE ASYMMETRIC UNIT BY THE OPERATION -X+Y+1, Y, -Z+5/2. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 123.70800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 166.04000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 419 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 468 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 470 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 651 O HOH A 655 2.13 REMARK 500 O HOH A 620 O HOH A 651 2.17 REMARK 500 O HOH A 573 O HOH A 584 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 469 O HOH A 474 9767 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 11 -139.31 51.01 REMARK 500 GLU A 65 110.58 73.64 REMARK 500 TYR A 105 -61.57 -143.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 541 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A 579 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 587 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 638 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 653 DISTANCE = 6.30 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 303 DBREF 4XT0 A 0 242 UNP P30347 LIGF_SPHPI 1 243 SEQADV 4XT0 GLY A -3 UNP P30347 EXPRESSION TAG SEQADV 4XT0 SER A -2 UNP P30347 EXPRESSION TAG SEQADV 4XT0 HIS A -1 UNP P30347 EXPRESSION TAG SEQRES 1 A 246 GLY SER HIS MET THR LEU LYS LEU TYR SER PHE GLY PRO SEQRES 2 A 246 GLY ALA ASN SER LEU LYS PRO LEU ALA THR LEU TYR GLU SEQRES 3 A 246 LYS GLY LEU GLU PHE GLU GLN VAL PHE VAL ASP PRO SER SEQRES 4 A 246 LYS PHE GLU GLN HIS SER ASP TRP PHE LYS LYS ILE ASN SEQRES 5 A 246 PRO ARG GLY GLN VAL PRO ALA LEU TRP HIS ASP GLY LYS SEQRES 6 A 246 VAL VAL THR GLU SER THR VAL ILE CYS GLU TYR LEU GLU SEQRES 7 A 246 ASP VAL PHE PRO GLU SER GLY ASN SER LEU ARG PRO ALA SEQRES 8 A 246 ASP PRO PHE LYS ARG ALA GLU MET ARG VAL TRP THR LYS SEQRES 9 A 246 TRP VAL ASP GLU TYR PHE CYS TRP CYS VAL SER THR ILE SEQRES 10 A 246 GLY TRP ALA PHE GLY ILE LYS ALA ILE ALA GLN LYS MET SEQRES 11 A 246 SER ASP GLU GLU PHE GLU GLU HIS ILE ASN LYS ASN VAL SEQRES 12 A 246 PRO ILE PRO GLU GLN GLN LEU LYS TRP ARG ARG ALA ARG SEQRES 13 A 246 ASN GLY PHE PRO GLN GLU MET LEU ASP GLU GLU PHE ARG SEQRES 14 A 246 LYS VAL GLY VAL SER VAL ALA ARG LEU GLU GLU THR LEU SEQRES 15 A 246 SER LYS GLN ASP TYR LEU VAL ASP THR GLY TYR SER LEU SEQRES 16 A 246 ALA ASP ILE CYS ASN PHE ALA ILE ALA ASN GLY LEU GLN SEQRES 17 A 246 ARG PRO GLY GLY PHE PHE GLY ASP TYR VAL ASN GLN GLU SEQRES 18 A 246 LYS THR PRO GLY LEU CYS ALA TRP LEU ASP ARG ILE ASN SEQRES 19 A 246 ALA ARG PRO ALA ILE LYS GLU MET PHE GLU LYS SER HET GSH A 301 20 HET TRS A 302 8 HET 1PE A 303 16 HETNAM GSH GLUTATHIONE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN TRS TRIS BUFFER HETSYN 1PE PEG400 FORMUL 2 GSH C10 H17 N3 O6 S FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 1PE C10 H22 O6 FORMUL 5 HOH *262(H2 O) HELIX 1 AA1 GLY A 10 LYS A 23 1 14 HELIX 2 AA2 ASP A 33 HIS A 40 5 8 HELIX 3 AA3 SER A 41 ASN A 48 1 8 HELIX 4 AA4 GLU A 65 PHE A 77 1 13 HELIX 5 AA5 ASP A 88 TYR A 105 1 18 HELIX 6 AA6 TYR A 105 GLY A 118 1 14 HELIX 7 AA7 ILE A 119 LYS A 125 1 7 HELIX 8 AA8 SER A 127 VAL A 139 1 13 HELIX 9 AA9 ILE A 141 GLY A 154 1 14 HELIX 10 AB1 PRO A 156 SER A 179 1 24 HELIX 11 AB2 SER A 190 ASN A 201 1 12 HELIX 12 AB3 THR A 219 ARG A 232 1 14 HELIX 13 AB4 ARG A 232 LYS A 241 1 10 SHEET 1 AA1 4 GLU A 28 PHE A 31 0 SHEET 2 AA1 4 LEU A 2 SER A 6 1 N LEU A 4 O VAL A 30 SHEET 3 AA1 4 ALA A 55 HIS A 58 -1 O TRP A 57 N LYS A 3 SHEET 4 AA1 4 LYS A 61 THR A 64 -1 O VAL A 63 N LEU A 56 CISPEP 1 VAL A 53 PRO A 54 0 -0.45 SITE 1 AC1 19 ALA A 11 ASN A 12 GLN A 39 HIS A 40 SITE 2 AC1 19 GLN A 52 VAL A 53 PRO A 54 GLU A 65 SITE 3 AC1 19 SER A 66 GLN A 144 TRP A 148 HOH A 416 SITE 4 AC1 19 HOH A 425 HOH A 430 HOH A 547 HOH A 548 SITE 5 AC1 19 HOH A 549 HOH A 556 HOH A 617 SITE 1 AC2 7 LEU A 20 GLY A 24 LEU A 25 PHE A 27 SITE 2 AC2 7 GLU A 237 LYS A 241 HOH A 583 SITE 1 AC3 7 ARG A 50 GLU A 94 VAL A 97 TRP A 98 SITE 2 AC3 7 TRP A 101 ARG A 173 HOH A 589 CRYST1 123.708 123.708 66.416 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008084 0.004667 0.000000 0.00000 SCALE2 0.000000 0.009334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015057 0.00000