HEADER SUGAR BINDING PROTEIN 26-JAN-15 4XUQ TITLE STRUCTURE OF THE CBM22-2 XYLAN-BINDING DOMAIN FROM PAENIBACILLUS TITLE 2 BARCINONENSIS XYN10C IN COMPLEX WITH XYLOTRIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE C; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 186-366; COMPND 5 SYNONYM: XYLANASE C,1,4-BETA-D-XYLAN XYLANOHYDROLASE C, CBM22; COMPND 6 EC: 3.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS BARCINONENSIS; SOURCE 3 ORGANISM_TAXID: 198119; SOURCE 4 GENE: XYNC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-2 KEYWDS BINDING SITE, CARBOHYDRATES, ENZYME STABILITY, SUBSTRATE SPECIFICITY, KEYWDS 2 TEMPERATURE, ENDO-1, 4-BETA-XYLANASE, XYLAN-BINDING DOMAIN, KEYWDS 3 THERMOPHILIC ENZYMES, THERMOSTABILIZING DOMAINS, XYLOTRIOSE, SUGAR KEYWDS 4 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SAINZ-POLO,J.SANZ-APARICIO REVDAT 5 10-JAN-24 4XUQ 1 HETSYN LINK REVDAT 4 29-JUL-20 4XUQ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 18-APR-18 4XUQ 1 JRNL REVDAT 2 22-JUL-15 4XUQ 1 JRNL REVDAT 1 03-JUN-15 4XUQ 0 JRNL AUTH M.A.SAINZ-POLO,B.GONZALEZ,M.MENENDEZ,F.I.PASTOR, JRNL AUTH 2 J.SANZ-APARICIO JRNL TITL EXPLORING MULTIMODULARITY IN PLANT CELL WALL DECONSTRUCTION: JRNL TITL 2 STRUCTURAL AND FUNCTIONAL ANALYSIS OF XYN10C CONTAINING THE JRNL TITL 3 CBM22-1-CBM22-2 TANDEM. JRNL REF J.BIOL.CHEM. V. 290 17116 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26001782 JRNL DOI 10.1074/JBC.M115.659300 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.A.SAINZ-POLO,B.GONZALEZ,F.I.PASTOR,J.SANZ-APARICIO REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF THE N-TERMINAL DOMAIN OF PAENIBACILLUS BARCINONENSIS REMARK 1 TITL 3 XYLANASE 10C CONTAINING THE CBM22-1-CBM22-2 TANDEM. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 71 136 2015 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 25664784 REMARK 1 DOI 10.1107/S2053230X14027496 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3789 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.650 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3939 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3613 ; 0.011 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5349 ; 1.519 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8348 ; 1.668 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 6.455 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;35.176 ;24.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;13.293 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;25.109 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4410 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 882 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1929 ; 1.872 ; 1.980 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1928 ; 1.868 ; 1.979 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2406 ; 2.760 ; 2.955 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2407 ; 2.760 ; 2.956 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2010 ; 2.644 ; 2.291 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2010 ; 2.644 ; 2.291 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2944 ; 3.958 ; 3.320 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4340 ; 5.290 ;16.244 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4327 ; 5.291 ;16.238 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 172 332 B 172 332 18618 0.10 0.05 REMARK 3 2 A 172 332 C 172 332 18620 0.10 0.05 REMARK 3 3 B 172 332 C 172 332 18974 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000203673. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.03100 REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.28900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4XUN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.95M SODIUM MALONATE. RATIO REMARK 280 PROTEIN/PRECIPITANT=1/0.5, PH 5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.28333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.14167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 159 REMARK 465 PRO A 160 REMARK 465 GLU A 161 REMARK 465 ASN A 162 REMARK 465 PRO A 163 REMARK 465 GLY A 164 REMARK 465 GLU A 165 REMARK 465 PRO A 166 REMARK 465 GLY A 167 REMARK 465 GLU A 168 REMARK 465 ALA A 169 REMARK 465 GLY A 170 REMARK 465 GLN A 171 REMARK 465 GLU A 333 REMARK 465 ALA A 334 REMARK 465 ILE A 335 REMARK 465 ALA A 336 REMARK 465 ILE A 337 REMARK 465 GLU A 338 REMARK 465 LYS A 339 REMARK 465 ALA B 159 REMARK 465 PRO B 160 REMARK 465 GLU B 161 REMARK 465 ASN B 162 REMARK 465 PRO B 163 REMARK 465 GLY B 164 REMARK 465 GLU B 165 REMARK 465 PRO B 166 REMARK 465 GLY B 167 REMARK 465 GLU B 168 REMARK 465 ALA B 169 REMARK 465 GLY B 170 REMARK 465 GLN B 171 REMARK 465 GLU B 333 REMARK 465 ALA B 334 REMARK 465 ILE B 335 REMARK 465 ALA B 336 REMARK 465 ILE B 337 REMARK 465 GLU B 338 REMARK 465 LYS B 339 REMARK 465 ALA C 159 REMARK 465 PRO C 160 REMARK 465 GLU C 161 REMARK 465 ASN C 162 REMARK 465 PRO C 163 REMARK 465 GLY C 164 REMARK 465 GLU C 165 REMARK 465 PRO C 166 REMARK 465 GLY C 167 REMARK 465 GLU C 168 REMARK 465 ALA C 169 REMARK 465 GLY C 170 REMARK 465 GLN C 171 REMARK 465 GLU C 333 REMARK 465 ALA C 334 REMARK 465 ILE C 335 REMARK 465 ALA C 336 REMARK 465 ILE C 337 REMARK 465 GLU C 338 REMARK 465 LYS C 339 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 XYP D 2 C1 XYP A 1001 1.63 REMARK 500 C1 XYP C 401 O4 XYP C 402 1.66 REMARK 500 C1 XYP B 401 O4 XYP B 402 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 XYP A 1001 REMARK 610 XYP B 401 REMARK 610 XYP C 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 177 O REMARK 620 2 GLU A 179 OE2 85.5 REMARK 620 3 SER A 204 OG 158.5 77.6 REMARK 620 4 ARG A 206 O 97.3 82.6 93.6 REMARK 620 5 ASP A 325 OD1 74.9 159.5 122.9 93.8 REMARK 620 6 ASP A 325 OD2 127.1 145.6 72.7 82.3 52.5 REMARK 620 7 HOH A1106 O 95.3 98.1 74.4 167.5 89.8 90.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 177 O REMARK 620 2 GLU B 179 OE2 84.6 REMARK 620 3 SER B 204 OG 158.3 77.7 REMARK 620 4 ARG B 206 O 95.4 84.1 95.1 REMARK 620 5 ASP B 325 OD1 75.8 159.5 122.8 91.9 REMARK 620 6 ASP B 325 OD2 128.1 145.3 72.3 81.7 52.7 REMARK 620 7 HOH B 507 O 94.3 96.2 75.6 170.3 91.1 92.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 177 O REMARK 620 2 GLU C 179 OE2 83.3 REMARK 620 3 SER C 204 OG 154.4 75.4 REMARK 620 4 ARG C 206 O 99.0 86.5 93.7 REMARK 620 5 ASP C 325 OD1 77.6 160.8 123.4 95.6 REMARK 620 6 ASP C 325 OD2 130.5 145.8 72.9 83.2 53.2 REMARK 620 7 HOH C 510 O 93.3 91.5 73.6 167.2 90.5 91.6 REMARK 620 N 1 2 3 4 5 6 REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE METABOLISM REMARK 630 MOLECULE NAME: BETA-D-XYLOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 XYP A 1001 REMARK 630 XYP B 401 REMARK 630 XYP B 402 REMARK 630 XYP C 401 REMARK 630 XYP C 402 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE DBREF 4XUQ A 159 339 UNP O69230 XYNC_PAEBA 186 366 DBREF 4XUQ B 159 339 UNP O69230 XYNC_PAEBA 186 366 DBREF 4XUQ C 159 339 UNP O69230 XYNC_PAEBA 186 366 SEQADV 4XUQ ASP A 177 UNP O69230 TYR 204 CONFLICT SEQADV 4XUQ ASP B 177 UNP O69230 TYR 204 CONFLICT SEQADV 4XUQ ASP C 177 UNP O69230 TYR 204 CONFLICT SEQRES 1 A 181 ALA PRO GLU ASN PRO GLY GLU PRO GLY GLU ALA GLY GLN SEQRES 2 A 181 ALA LEU PHE LYS ALA ASP PHE GLU ASP GLY ASN ILE GLY SEQRES 3 A 181 ASN TRP ARG ALA ARG GLY THR GLU LYS LEU GLU VAL VAL SEQRES 4 A 181 SER GLY ILE GLY HIS ASN SER ASN ARG SER LEU LYS THR SEQRES 5 A 181 SER SER ARG SER GLU THR TYR HIS GLY PRO LEU VAL GLU SEQRES 6 A 181 VAL LEU PRO TYR LEU GLN LYS GLY SER THR VAL HIS ILE SEQRES 7 A 181 SER PHE TRP ALA MET TYR ASP GLU GLY PRO ALA THR GLN SEQRES 8 A 181 VAL ILE ASN GLY SER LEU GLU LYS GLU PHE ASN ARG ASP SEQRES 9 A 181 THR ALA ASN LEU GLU TYR ALA MET PHE ALA SER THR THR SEQRES 10 A 181 LEU ASN LYS GLY GLN TRP LYS LYS ILE GLU ALA ASP ILE SEQRES 11 A 181 ILE VAL PRO ALA GLU SER THR GLY ILE SER GLY LEU ARG SEQRES 12 A 181 MET TYR ALA GLU THR PRO TRP LYS GLN SER SER GLU VAL SEQRES 13 A 181 THR GLU THR ASP THR ILE PRO PHE TYR VAL ASP ASP VAL SEQRES 14 A 181 GLN ILE THR ALA THR GLU ALA ILE ALA ILE GLU LYS SEQRES 1 B 181 ALA PRO GLU ASN PRO GLY GLU PRO GLY GLU ALA GLY GLN SEQRES 2 B 181 ALA LEU PHE LYS ALA ASP PHE GLU ASP GLY ASN ILE GLY SEQRES 3 B 181 ASN TRP ARG ALA ARG GLY THR GLU LYS LEU GLU VAL VAL SEQRES 4 B 181 SER GLY ILE GLY HIS ASN SER ASN ARG SER LEU LYS THR SEQRES 5 B 181 SER SER ARG SER GLU THR TYR HIS GLY PRO LEU VAL GLU SEQRES 6 B 181 VAL LEU PRO TYR LEU GLN LYS GLY SER THR VAL HIS ILE SEQRES 7 B 181 SER PHE TRP ALA MET TYR ASP GLU GLY PRO ALA THR GLN SEQRES 8 B 181 VAL ILE ASN GLY SER LEU GLU LYS GLU PHE ASN ARG ASP SEQRES 9 B 181 THR ALA ASN LEU GLU TYR ALA MET PHE ALA SER THR THR SEQRES 10 B 181 LEU ASN LYS GLY GLN TRP LYS LYS ILE GLU ALA ASP ILE SEQRES 11 B 181 ILE VAL PRO ALA GLU SER THR GLY ILE SER GLY LEU ARG SEQRES 12 B 181 MET TYR ALA GLU THR PRO TRP LYS GLN SER SER GLU VAL SEQRES 13 B 181 THR GLU THR ASP THR ILE PRO PHE TYR VAL ASP ASP VAL SEQRES 14 B 181 GLN ILE THR ALA THR GLU ALA ILE ALA ILE GLU LYS SEQRES 1 C 181 ALA PRO GLU ASN PRO GLY GLU PRO GLY GLU ALA GLY GLN SEQRES 2 C 181 ALA LEU PHE LYS ALA ASP PHE GLU ASP GLY ASN ILE GLY SEQRES 3 C 181 ASN TRP ARG ALA ARG GLY THR GLU LYS LEU GLU VAL VAL SEQRES 4 C 181 SER GLY ILE GLY HIS ASN SER ASN ARG SER LEU LYS THR SEQRES 5 C 181 SER SER ARG SER GLU THR TYR HIS GLY PRO LEU VAL GLU SEQRES 6 C 181 VAL LEU PRO TYR LEU GLN LYS GLY SER THR VAL HIS ILE SEQRES 7 C 181 SER PHE TRP ALA MET TYR ASP GLU GLY PRO ALA THR GLN SEQRES 8 C 181 VAL ILE ASN GLY SER LEU GLU LYS GLU PHE ASN ARG ASP SEQRES 9 C 181 THR ALA ASN LEU GLU TYR ALA MET PHE ALA SER THR THR SEQRES 10 C 181 LEU ASN LYS GLY GLN TRP LYS LYS ILE GLU ALA ASP ILE SEQRES 11 C 181 ILE VAL PRO ALA GLU SER THR GLY ILE SER GLY LEU ARG SEQRES 12 C 181 MET TYR ALA GLU THR PRO TRP LYS GLN SER SER GLU VAL SEQRES 13 C 181 THR GLU THR ASP THR ILE PRO PHE TYR VAL ASP ASP VAL SEQRES 14 C 181 GLN ILE THR ALA THR GLU ALA ILE ALA ILE GLU LYS HET XYP D 1 10 HET XYP D 2 9 HET XYP A1001 9 HET CA A1004 1 HET XYP B 401 9 HET XYP B 402 10 HET CA B 403 1 HET XYP C 401 9 HET XYP C 402 10 HET CA C 403 1 HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM CA CALCIUM ION HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 4 XYP 7(C5 H10 O5) FORMUL 6 CA 3(CA 2+) FORMUL 13 HOH *84(H2 O) HELIX 1 AA1 LEU A 225 LEU A 228 5 4 HELIX 2 AA2 ALA A 292 THR A 295 5 4 HELIX 3 AA3 GLN A 310 VAL A 314 5 5 HELIX 4 AA4 THR A 315 ILE A 320 5 6 HELIX 5 AA5 LEU B 225 LEU B 228 5 4 HELIX 6 AA6 ALA B 292 THR B 295 5 4 HELIX 7 AA7 GLN B 310 VAL B 314 5 5 HELIX 8 AA8 LEU C 225 LEU C 228 5 4 HELIX 9 AA9 ALA C 292 THR C 295 5 4 HELIX 10 AB1 GLN C 310 VAL C 314 5 5 HELIX 11 AB2 THR C 315 ILE C 320 5 6 SHEET 1 AA1 4 PHE A 174 ALA A 176 0 SHEET 2 AA1 4 PHE A 322 ALA A 331 -1 O VAL A 327 N ALA A 176 SHEET 3 AA1 4 ARG A 206 SER A 211 -1 N THR A 210 O PHE A 322 SHEET 4 AA1 4 LYS A 193 SER A 198 -1 N GLU A 195 O LYS A 209 SHEET 1 AA2 4 PHE A 174 ALA A 176 0 SHEET 2 AA2 4 PHE A 322 ALA A 331 -1 O VAL A 327 N ALA A 176 SHEET 3 AA2 4 THR A 233 MET A 241 -1 N MET A 241 O TYR A 323 SHEET 4 AA2 4 LYS A 282 ILE A 289 -1 O ILE A 284 N PHE A 238 SHEET 1 AA3 4 LEU A 221 GLU A 223 0 SHEET 2 AA3 4 ILE A 297 GLU A 305 -1 O MET A 302 N VAL A 222 SHEET 3 AA3 4 THR A 248 PHE A 259 -1 N GLU A 258 O SER A 298 SHEET 4 AA3 4 GLU A 267 ASN A 277 -1 O PHE A 271 N GLY A 253 SHEET 1 AA4 4 PHE B 174 ALA B 176 0 SHEET 2 AA4 4 PHE B 322 ALA B 331 -1 O VAL B 327 N ALA B 176 SHEET 3 AA4 4 ARG B 206 SER B 211 -1 N THR B 210 O PHE B 322 SHEET 4 AA4 4 LYS B 193 SER B 198 -1 N LYS B 193 O SER B 211 SHEET 1 AA5 4 PHE B 174 ALA B 176 0 SHEET 2 AA5 4 PHE B 322 ALA B 331 -1 O VAL B 327 N ALA B 176 SHEET 3 AA5 4 THR B 233 MET B 241 -1 N MET B 241 O TYR B 323 SHEET 4 AA5 4 LYS B 282 ILE B 289 -1 O ILE B 284 N PHE B 238 SHEET 1 AA6 4 LEU B 221 GLU B 223 0 SHEET 2 AA6 4 ILE B 297 GLU B 305 -1 O MET B 302 N VAL B 222 SHEET 3 AA6 4 THR B 248 PHE B 259 -1 N GLU B 258 O SER B 298 SHEET 4 AA6 4 GLU B 267 ASN B 277 -1 O LEU B 276 N GLN B 249 SHEET 1 AA7 4 PHE C 174 ALA C 176 0 SHEET 2 AA7 4 PHE C 322 ALA C 331 -1 O VAL C 327 N ALA C 176 SHEET 3 AA7 4 ARG C 206 SER C 211 -1 N THR C 210 O PHE C 322 SHEET 4 AA7 4 LYS C 193 SER C 198 -1 N LYS C 193 O SER C 211 SHEET 1 AA8 4 PHE C 174 ALA C 176 0 SHEET 2 AA8 4 PHE C 322 ALA C 331 -1 O VAL C 327 N ALA C 176 SHEET 3 AA8 4 THR C 233 MET C 241 -1 N MET C 241 O TYR C 323 SHEET 4 AA8 4 LYS C 282 ILE C 289 -1 O ILE C 284 N PHE C 238 SHEET 1 AA9 4 LEU C 221 GLU C 223 0 SHEET 2 AA9 4 ILE C 297 GLU C 305 -1 O MET C 302 N VAL C 222 SHEET 3 AA9 4 THR C 248 PHE C 259 -1 N GLU C 258 O SER C 298 SHEET 4 AA9 4 GLU C 267 ASN C 277 -1 O LEU C 276 N GLN C 249 LINK O4 XYP D 1 C1 XYP D 2 1555 1555 1.51 LINK O ASP A 177 CA CA A1004 1555 1555 2.37 LINK OE2 GLU A 179 CA CA A1004 1555 1555 2.34 LINK OG SER A 204 CA CA A1004 1555 1555 2.53 LINK O ARG A 206 CA CA A1004 1555 1555 2.27 LINK OD1 ASP A 325 CA CA A1004 1555 1555 2.50 LINK OD2 ASP A 325 CA CA A1004 1555 1555 2.45 LINK CA CA A1004 O HOH A1106 1555 1555 2.26 LINK O ASP B 177 CA CA B 403 1555 1555 2.36 LINK OE2 GLU B 179 CA CA B 403 1555 1555 2.38 LINK OG SER B 204 CA CA B 403 1555 1555 2.54 LINK O ARG B 206 CA CA B 403 1555 1555 2.26 LINK OD1 ASP B 325 CA CA B 403 1555 1555 2.50 LINK OD2 ASP B 325 CA CA B 403 1555 1555 2.42 LINK CA CA B 403 O HOH B 507 1555 1555 2.33 LINK O ASP C 177 CA CA C 403 1555 1555 2.35 LINK OE2 GLU C 179 CA CA C 403 1555 1555 2.50 LINK OG SER C 204 CA CA C 403 1555 1555 2.56 LINK O ARG C 206 CA CA C 403 1555 1555 2.19 LINK OD1 ASP C 325 CA CA C 403 1555 1555 2.48 LINK OD2 ASP C 325 CA CA C 403 1555 1555 2.45 LINK CA CA C 403 O HOH C 510 1555 1555 2.19 CRYST1 92.455 92.455 48.425 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010816 0.006245 0.000000 0.00000 SCALE2 0.000000 0.012489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020651 0.00000