HEADER HYDROLASE/ANTIBIOTIC 26-JAN-15 4XUX TITLE STRUCTURE OF AMPC BOUND TO RPX-7009 AT 1.75 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 21-381; COMPND 5 SYNONYM: CEPHALOSPORINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: AMPC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HYDROLASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.C.CLIFTON,J.ABENDROTH REVDAT 3 27-SEP-23 4XUX 1 COMPND SOURCE JRNL REMARK REVDAT 3 2 1 HETNAM HETSYN REVDAT 2 27-MAY-15 4XUX 1 JRNL REVDAT 1 01-APR-15 4XUX 0 JRNL AUTH S.J.HECKER,K.R.REDDY,M.TOTROV,G.C.HIRST,O.LOMOVSKAYA, JRNL AUTH 2 D.C.GRIFFITH,P.KING,R.TSIVKOVSKI,D.SUN,M.SABET,Z.TARAZI, JRNL AUTH 3 M.C.CLIFTON,K.ATKINS,A.RAYMOND,K.T.POTTS,J.ABENDROTH, JRNL AUTH 4 S.H.BOYER,J.S.LOUTIT,E.E.MORGAN,S.DURSO,M.N.DUDLEY JRNL TITL DISCOVERY OF A CYCLIC BORONIC ACID BETA-LACTAMASE INHIBITOR JRNL TITL 2 (RPX7009) WITH UTILITY VS CLASS A SERINE CARBAPENEMASES. JRNL REF J.MED.CHEM. V. 58 3682 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25782055 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00127 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1772 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2194 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.358 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2879 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1894 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3940 ; 1.572 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4639 ; 0.941 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 6.000 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;35.146 ;24.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 425 ;12.043 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.560 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3195 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 562 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 381 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1439 11.5046 18.3867 REMARK 3 T TENSOR REMARK 3 T11: 0.0069 T22: 0.0021 REMARK 3 T33: 0.0019 T12: 0.0007 REMARK 3 T13: -0.0014 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.4444 L22: 0.1984 REMARK 3 L33: 0.2440 L12: -0.0435 REMARK 3 L13: -0.0174 L23: 0.0313 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.0191 S13: 0.0174 REMARK 3 S21: 0.0076 S22: 0.0050 S23: -0.0048 REMARK 3 S31: 0.0122 S32: 0.0152 S33: 0.0021 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XUX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000206339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34340 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 1XX2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30MG/ML AMPC, 30% PEG3000, 0.1M TRIS, REMARK 280 PH 7.0, 0.2M NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.16500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.16500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 551 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 620 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 THR A 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 122 CG CD OE1 NE2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 GLN A 381 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 153 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 198 -56.72 -121.44 REMARK 500 TYR A 241 14.97 -157.64 REMARK 500 ASN A 361 45.05 -100.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 782 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 886 DISTANCE = 6.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4D6 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XUZ RELATED DB: PDB DBREF 4XUX A 21 381 UNP P05364 AMPC_ENTCL 21 381 SEQADV 4XUX GLY A 19 UNP P05364 EXPRESSION TAG SEQADV 4XUX SER A 20 UNP P05364 EXPRESSION TAG SEQRES 1 A 363 GLY SER THR PRO VAL SER GLU LYS GLN LEU ALA GLU VAL SEQRES 2 A 363 VAL ALA ASN THR ILE THR PRO LEU MET LYS ALA GLN SER SEQRES 3 A 363 VAL PRO GLY MET ALA VAL ALA VAL ILE TYR GLN GLY LYS SEQRES 4 A 363 PRO HIS TYR TYR THR PHE GLY LYS ALA ASP ILE ALA ALA SEQRES 5 A 363 ASN LYS PRO VAL THR PRO GLN THR LEU PHE GLU LEU GLY SEQRES 6 A 363 SER ILE SER LYS THR PHE THR GLY VAL LEU GLY GLY ASP SEQRES 7 A 363 ALA ILE ALA ARG GLY GLU ILE SER LEU ASP ASP ALA VAL SEQRES 8 A 363 THR ARG TYR TRP PRO GLN LEU THR GLY LYS GLN TRP GLN SEQRES 9 A 363 GLY ILE ARG MET LEU ASP LEU ALA THR TYR THR ALA GLY SEQRES 10 A 363 GLY LEU PRO LEU GLN VAL PRO ASP GLU VAL THR ASP ASN SEQRES 11 A 363 ALA SER LEU LEU ARG PHE TYR GLN ASN TRP GLN PRO GLN SEQRES 12 A 363 TRP LYS PRO GLY THR THR ARG LEU TYR ALA ASN ALA SER SEQRES 13 A 363 ILE GLY LEU PHE GLY ALA LEU ALA VAL LYS PRO SER GLY SEQRES 14 A 363 MET PRO TYR GLU GLN ALA MET THR THR ARG VAL LEU LYS SEQRES 15 A 363 PRO LEU LYS LEU ASP HIS THR TRP ILE ASN VAL PRO LYS SEQRES 16 A 363 ALA GLU GLU ALA HIS TYR ALA TRP GLY TYR ARG ASP GLY SEQRES 17 A 363 LYS ALA VAL ARG VAL SER PRO GLY MET LEU ASP ALA GLN SEQRES 18 A 363 ALA TYR GLY VAL LYS THR ASN VAL GLN ASP MET ALA ASN SEQRES 19 A 363 TRP VAL MET ALA ASN MET ALA PRO GLU ASN VAL ALA ASP SEQRES 20 A 363 ALA SER LEU LYS GLN GLY ILE ALA LEU ALA GLN SER ARG SEQRES 21 A 363 TYR TRP ARG ILE GLY SER MET TYR GLN GLY LEU GLY TRP SEQRES 22 A 363 GLU MET LEU ASN TRP PRO VAL GLU ALA ASN THR VAL VAL SEQRES 23 A 363 GLU GLY SER ASP SER LYS VAL ALA LEU ALA PRO LEU PRO SEQRES 24 A 363 VAL ALA GLU VAL ASN PRO PRO ALA PRO PRO VAL LYS ALA SEQRES 25 A 363 SER TRP VAL HIS LYS THR GLY SER THR GLY GLY PHE GLY SEQRES 26 A 363 SER TYR VAL ALA PHE ILE PRO GLU LYS GLN ILE GLY ILE SEQRES 27 A 363 VAL MET LEU ALA ASN THR SER TYR PRO ASN PRO ALA ARG SEQRES 28 A 363 VAL GLU ALA ALA TYR HIS ILE LEU GLU ALA LEU GLN HET 4D6 A 401 40 HET EDO A 402 4 HET EDO A 403 4 HET PG0 A 404 8 HETNAM 4D6 VABORBACTAM HETNAM EDO 1,2-ETHANEDIOL HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETSYN 4D6 {(3R,6S)-2-HYDROXY-3-[(THIOPHEN-2-YLACETYL)AMINO]-1,2- HETSYN 2 4D6 OXABORINAN-6-YL}ACETIC ACID; 2-((3R,6S)-2-HYDROXY-3- HETSYN 3 4D6 (2-(THIOPHEN-2-YL)ACETAMIDO)-1,2-OXABORINAN-6-YL) HETSYN 4 4D6 ACETIC ACID; 2-[(3R,6S)-2-HYDROXY-3-[(2-THIOPHEN-2- HETSYN 5 4D6 YLACETYL)AMINO]OXABORINAN-6-YL]ACETIC ACID; 1,2- HETSYN 6 4D6 OXABORINANE-6-ACETIC ACID, 2-HYDROXY-3-((2-(2- HETSYN 7 4D6 THIENYL)ACETYL)AMINO)-, (3R,6S)- HETSYN EDO ETHYLENE GLYCOL HETSYN PG0 PEG 6000 FORMUL 2 4D6 C12 H16 B N O5 S FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 PG0 C5 H12 O3 FORMUL 6 HOH *407(H2 O) HELIX 1 AA1 SER A 24 SER A 44 1 21 HELIX 2 AA2 ILE A 85 ARG A 100 1 16 HELIX 3 AA3 ALA A 108 TYR A 112 5 5 HELIX 4 AA4 GLY A 118 GLN A 122 5 5 HELIX 5 AA5 ARG A 125 THR A 131 1 7 HELIX 6 AA6 ASP A 147 TRP A 158 1 12 HELIX 7 AA7 ALA A 171 VAL A 183 1 13 HELIX 8 AA8 PRO A 189 VAL A 198 1 10 HELIX 9 AA9 PRO A 212 TYR A 219 5 8 HELIX 10 AB1 LEU A 236 TYR A 241 1 6 HELIX 11 AB2 ASN A 246 ALA A 259 1 14 HELIX 12 AB3 PRO A 260 VAL A 263 5 4 HELIX 13 AB4 ASP A 265 GLN A 276 1 12 HELIX 14 AB5 GLU A 299 SER A 307 1 9 HELIX 15 AB6 ASP A 308 LEU A 313 1 6 HELIX 16 AB7 PRO A 365 ALA A 379 1 15 SHEET 1 AA110 LYS A 72 PRO A 73 0 SHEET 2 AA110 LYS A 57 ASP A 67 -1 N ALA A 66 O LYS A 72 SHEET 3 AA110 GLY A 47 TYR A 54 -1 N VAL A 50 O TYR A 61 SHEET 4 AA110 ILE A 354 ALA A 360 -1 O LEU A 359 N ALA A 49 SHEET 5 AA110 GLY A 343 ILE A 349 -1 N ALA A 347 O ILE A 356 SHEET 6 AA110 SER A 331 SER A 338 -1 N GLY A 337 O SER A 344 SHEET 7 AA110 GLU A 292 ASN A 295 -1 N LEU A 294 O TRP A 332 SHEET 8 AA110 MET A 285 GLN A 287 -1 N TYR A 286 O MET A 293 SHEET 9 AA110 ARG A 278 ILE A 282 -1 N ILE A 282 O MET A 285 SHEET 10 AA110 ALA A 319 ALA A 325 -1 O ALA A 319 N ARG A 281 SHEET 1 AA2 3 PHE A 80 GLU A 81 0 SHEET 2 AA2 3 LYS A 244 THR A 245 -1 O THR A 245 N PHE A 80 SHEET 3 AA2 3 THR A 207 TRP A 208 -1 N TRP A 208 O LYS A 244 SHEET 1 AA3 2 THR A 167 ARG A 168 0 SHEET 2 AA3 2 LEU A 316 PRO A 317 -1 O LEU A 316 N ARG A 168 SHEET 1 AA4 2 GLY A 222 ARG A 224 0 SHEET 2 AA4 2 LYS A 227 VAL A 229 -1 O VAL A 229 N GLY A 222 LINK OG SER A 84 B15A4D6 A 401 1555 1555 1.43 LINK OG SER A 84 B15B4D6 A 401 1555 1555 1.44 CISPEP 1 TRP A 296 PRO A 297 0 3.75 CISPEP 2 ASN A 322 PRO A 323 0 -1.51 SITE 1 AC1 11 SER A 84 GLN A 140 TYR A 170 ASN A 172 SITE 2 AC1 11 TYR A 241 THR A 336 GLY A 337 SER A 338 SITE 3 AC1 11 GLY A 340 ASN A 366 HOH A 711 SITE 1 AC2 7 GLU A 292 HIS A 334 LYS A 335 THR A 336 SITE 2 AC2 7 HOH A 663 HOH A 670 HOH A 729 SITE 1 AC3 5 GLN A 161 ASP A 265 HOH A 511 HOH A 548 SITE 2 AC3 5 HOH A 728 SITE 1 AC4 3 TRP A 113 ASN A 148 ALA A 180 CRYST1 62.560 69.600 76.330 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013101 0.00000