data_4XWF # _entry.id 4XWF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4XWF pdb_00004xwf 10.2210/pdb4xwf/pdb WWPDB D_1000206340 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 4XW7 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4XWF _pdbx_database_status.recvd_initial_deposition_date 2015-01-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Trausch, J.J.' 1 'Batey, R.T.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chem.Biol. _citation.journal_id_ASTM CBOLE2 _citation.journal_id_CSD 2050 _citation.journal_id_ISSN 1074-5521 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 22 _citation.language ? _citation.page_first 829 _citation.page_last 837 _citation.title 'Metal Ion-Mediated Nucleobase Recognition by the ZTP Riboswitch.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2015.06.007 _citation.pdbx_database_id_PubMed 26144884 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trausch, J.J.' 1 ? primary 'Marcano-Velazquez, J.G.' 2 ? primary 'Matyjasik, M.M.' 3 ? primary 'Batey, R.T.' 4 ? # _cell.entry_id 4XWF _cell.length_a 40.160 _cell.length_b 40.160 _cell.length_c 234.910 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XWF _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'pfl RNA' 20782.453 1 ? ? ? ? 2 non-polymer syn 'AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE' 338.211 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 4 ? ? ? ? 5 non-polymer syn 'CACODYLATE ION' 136.989 1 ? ? ? ? 6 water nat water 18.015 107 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGUCGUGACUGGCGAACAGGUGGGAAACCACCGGGGAGCGACCCUUGCCGCCCGCCUGGGCAA _entity_poly.pdbx_seq_one_letter_code_can GGGUCGUGACUGGCGAACAGGUGGGAAACCACCGGGGAGCGACCCUUGCCGCCCGCCUGGGCAA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 U n 1 5 C n 1 6 G n 1 7 U n 1 8 G n 1 9 A n 1 10 C n 1 11 U n 1 12 G n 1 13 G n 1 14 C n 1 15 G n 1 16 A n 1 17 A n 1 18 C n 1 19 A n 1 20 G n 1 21 G n 1 22 U n 1 23 G n 1 24 G n 1 25 G n 1 26 A n 1 27 A n 1 28 A n 1 29 C n 1 30 C n 1 31 A n 1 32 C n 1 33 C n 1 34 G n 1 35 G n 1 36 G n 1 37 G n 1 38 A n 1 39 G n 1 40 C n 1 41 G n 1 42 A n 1 43 C n 1 44 C n 1 45 C n 1 46 U n 1 47 U n 1 48 G n 1 49 C n 1 50 C n 1 51 G n 1 52 C n 1 53 C n 1 54 C n 1 55 G n 1 56 C n 1 57 C n 1 58 U n 1 59 G n 1 60 G n 1 61 G n 1 62 C n 1 63 A n 1 64 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 64 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Actinomyces odontolyticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1660 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Enterobacteria phage T7' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 10760 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.db_code 4XWF _struct_ref.db_name PDB _struct_ref.details ? _struct_ref.entity_id 1 _struct_ref.id 1 _struct_ref.seq_align ? _struct_ref.seq_dif ? _struct_ref.pdbx_db_accession 4XWF _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_align_end ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4XWF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 64 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4XWF _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 64 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 64 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AMZ non-polymer . 'AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE' AICAR 'C9 H15 N4 O8 P' 338.211 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CAC non-polymer . 'CACODYLATE ION' dimethylarsinate 'C2 H6 As O2 -1' 136.989 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4XWF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 303.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 8K, ammonium acetate, magnesium acetate, cacodylate' _exptl_crystal_grow.pdbx_pH_range 7.0 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-12-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99995 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.99995 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4XWF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 40.26 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 19001 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.9 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 2.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.84 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs 1119 _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.3 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.574 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.471 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.796 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4XWF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 32475 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.751 _refine.ls_d_res_high 1.800 _refine.ls_percent_reflns_obs 95.45 _refine.ls_R_factor_obs 0.2137 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2096 _refine.ls_R_factor_R_free 0.2493 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.00 _refine.ls_number_reflns_R_free 3248 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 4XW7 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.27 _refine.pdbx_overall_phase_error 28.04 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1379 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 1544 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 25.751 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1594 'X-RAY DIFFRACTION' ? f_angle_d 1.201 ? ? 2508 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.322 ? ? 767 'X-RAY DIFFRACTION' ? f_chiral_restr 0.049 ? ? 325 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 66 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.8000 1.8269 1288 0.3209 94.00 0.3713 . . 138 . . 'X-RAY DIFFRACTION' . 1.8269 1.8554 1199 0.3118 95.00 0.3491 . . 140 . . 'X-RAY DIFFRACTION' . 1.8554 1.8858 1269 0.2933 95.00 0.3366 . . 149 . . 'X-RAY DIFFRACTION' . 1.8858 1.9183 1286 0.3001 95.00 0.3821 . . 140 . . 'X-RAY DIFFRACTION' . 1.9183 1.9532 1276 0.2967 95.00 0.2999 . . 139 . . 'X-RAY DIFFRACTION' . 1.9532 1.9907 1250 0.2855 95.00 0.3487 . . 143 . . 'X-RAY DIFFRACTION' . 1.9907 2.0314 1279 0.2784 96.00 0.3555 . . 145 . . 'X-RAY DIFFRACTION' . 2.0314 2.0755 1223 0.2735 95.00 0.3033 . . 141 . . 'X-RAY DIFFRACTION' . 2.0755 2.1238 1294 0.2784 96.00 0.3747 . . 146 . . 'X-RAY DIFFRACTION' . 2.1238 2.1769 1277 0.2668 96.00 0.2695 . . 142 . . 'X-RAY DIFFRACTION' . 2.1769 2.2357 1321 0.2849 96.00 0.3698 . . 135 . . 'X-RAY DIFFRACTION' . 2.2357 2.3014 1251 0.2572 95.00 0.2516 . . 136 . . 'X-RAY DIFFRACTION' . 2.3014 2.3757 1281 0.2607 95.00 0.3233 . . 138 . . 'X-RAY DIFFRACTION' . 2.3757 2.4605 1257 0.2561 96.00 0.3231 . . 134 . . 'X-RAY DIFFRACTION' . 2.4605 2.5589 1269 0.2486 96.00 0.3284 . . 141 . . 'X-RAY DIFFRACTION' . 2.5589 2.6753 1289 0.2633 95.00 0.3189 . . 139 . . 'X-RAY DIFFRACTION' . 2.6753 2.8162 1254 0.2684 95.00 0.2737 . . 143 . . 'X-RAY DIFFRACTION' . 2.8162 2.9924 1274 0.2548 96.00 0.3565 . . 143 . . 'X-RAY DIFFRACTION' . 2.9924 3.2230 1276 0.1942 97.00 0.2376 . . 144 . . 'X-RAY DIFFRACTION' . 3.2230 3.5466 1300 0.1655 97.00 0.1882 . . 144 . . 'X-RAY DIFFRACTION' . 3.5466 4.0581 1285 0.1498 96.00 0.1585 . . 144 . . 'X-RAY DIFFRACTION' . 4.0581 5.1062 1252 0.1313 95.00 0.1728 . . 145 . . 'X-RAY DIFFRACTION' . 5.1062 25.7540 1277 0.1591 96.00 0.1931 . . 139 . . # _struct.entry_id 4XWF _struct.title 'Crystal structure of the ZMP riboswitch at 1.80 angstrom' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4XWF _struct_keywords.text 'RNA, Riboswitch, ZMP, AICAR' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? K N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 11 OP1 ? ? ? 1_555 C MG . MG ? ? A U 11 A MG 102 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc2 metalc ? ? A U 22 O4 ? ? ? 1_555 E MG . MG ? ? A U 22 A MG 104 1_555 ? ? ? ? ? ? ? 2.444 ? ? metalc3 metalc ? ? A G 23 O6 ? ? ? 1_555 E MG . MG ? ? A G 23 A MG 104 1_555 ? ? ? ? ? ? ? 2.205 ? ? metalc4 metalc ? ? A C 29 OP2 ? ? ? 1_555 C MG . MG ? ? A C 29 A MG 102 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc5 metalc ? ? A C 52 O2 ? ? ? 1_555 D MG . MG ? ? A C 52 A MG 103 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc6 metalc ? ? B AMZ . O5 ? ? ? 1_555 C MG . MG ? ? A AMZ 101 A MG 102 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 102 A HOH 221 1_555 ? ? ? ? ? ? ? 1.937 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 102 A HOH 222 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 102 A HOH 225 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 103 A HOH 210 7_555 ? ? ? ? ? ? ? 2.112 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 103 A HOH 214 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 103 A HOH 228 1_555 ? ? ? ? ? ? ? 1.864 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 103 A HOH 231 1_555 ? ? ? ? ? ? ? 1.902 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 103 A HOH 237 1_555 ? ? ? ? ? ? ? 2.008 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 J CAC . O1 ? ? A MG 104 A CAC 109 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 J CAC . O2 ? ? A MG 104 A CAC 109 1_555 ? ? ? ? ? ? ? 2.704 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 255 1_555 ? ? ? ? ? ? ? 2.762 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 278 1_555 ? ? ? ? ? ? ? 2.607 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 1 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 1 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 1 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 2 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 2 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 2 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 3 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 3 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 3 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 42 N1 ? ? A U 4 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 42 N6 ? ? A U 4 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 5 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 5 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 5 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 6 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 6 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 6 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 7 N3 ? ? ? 1_555 A G 39 O6 ? ? A U 7 A G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A U 7 O2 ? ? ? 1_555 A G 39 N1 ? ? A U 7 A G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 38 N7 ? ? A G 8 A A 38 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 38 N6 ? ? A G 8 A A 38 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 37 N3 ? ? A A 9 A G 37 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog23 hydrog ? ? A A 9 N7 ? ? ? 1_555 A G 37 N2 ? ? A A 9 A G 37 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog24 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 10 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 10 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 10 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 11 N3 ? ? ? 1_555 A G 35 O6 ? ? A U 11 A G 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A U 11 O2 ? ? ? 1_555 A G 35 N1 ? ? A U 11 A G 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A G 12 N2 ? ? ? 1_555 A A 28 N3 ? ? A G 12 A A 28 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog30 hydrog ? ? A A 19 N3 ? ? ? 1_555 A G 34 N2 ? ? A A 19 A G 34 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog31 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 20 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 20 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 20 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 21 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 21 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 21 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 22 A A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 22 A A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 23 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 23 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 23 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 24 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 24 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 24 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 46 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 46 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 46 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 46 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 47 N3 ? ? ? 1_555 A A 63 N1 ? ? A U 47 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 47 O4 ? ? ? 1_555 A A 63 N6 ? ? A U 47 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 48 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 48 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 48 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 48 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 48 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 48 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 61 N1 ? ? A C 49 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 61 O6 ? ? A C 49 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 61 N2 ? ? A C 49 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 60 N1 ? ? A C 50 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 60 O6 ? ? A C 50 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 60 N2 ? ? A C 50 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 51 O6 ? ? ? 1_555 A G 59 N1 ? ? A G 51 A G 59 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AMZ 101 ? 15 'binding site for residue AMZ A 101' AC2 Software A MG 102 ? 6 'binding site for residue MG A 102' AC3 Software A MG 103 ? 6 'binding site for residue MG A 103' AC4 Software A MG 104 ? 5 'binding site for residue MG A 104' AC5 Software A IRI 105 ? 5 'binding site for residue IRI A 105' AC6 Software A IRI 106 ? 6 'binding site for residue IRI A 106' AC7 Software A IRI 107 ? 5 'binding site for residue IRI A 107' AC8 Software A IRI 108 ? 4 'binding site for residue IRI A 108' AC9 Software A CAC 109 ? 6 'binding site for residue CAC A 109' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 U A 11 ? U A 11 . ? 1_555 ? 2 AC1 15 G A 12 ? G A 12 . ? 1_555 ? 3 AC1 15 A A 28 ? A A 28 . ? 1_555 ? 4 AC1 15 C A 29 ? C A 29 . ? 1_555 ? 5 AC1 15 G A 51 ? G A 51 . ? 7_555 ? 6 AC1 15 C A 52 ? C A 52 . ? 7_555 ? 7 AC1 15 C A 57 ? C A 57 . ? 7_555 ? 8 AC1 15 U A 58 ? U A 58 . ? 7_555 ? 9 AC1 15 G A 59 ? G A 59 . ? 7_555 ? 10 AC1 15 MG C . ? MG A 102 . ? 1_555 ? 11 AC1 15 HOH K . ? HOH A 203 . ? 1_555 ? 12 AC1 15 HOH K . ? HOH A 210 . ? 1_555 ? 13 AC1 15 HOH K . ? HOH A 222 . ? 1_555 ? 14 AC1 15 HOH K . ? HOH A 228 . ? 7_555 ? 15 AC1 15 HOH K . ? HOH A 232 . ? 1_555 ? 16 AC2 6 U A 11 ? U A 11 . ? 1_555 ? 17 AC2 6 C A 29 ? C A 29 . ? 1_555 ? 18 AC2 6 AMZ B . ? AMZ A 101 . ? 1_555 ? 19 AC2 6 HOH K . ? HOH A 221 . ? 1_555 ? 20 AC2 6 HOH K . ? HOH A 222 . ? 1_555 ? 21 AC2 6 HOH K . ? HOH A 225 . ? 1_555 ? 22 AC3 6 C A 52 ? C A 52 . ? 1_555 ? 23 AC3 6 HOH K . ? HOH A 210 . ? 7_555 ? 24 AC3 6 HOH K . ? HOH A 214 . ? 1_555 ? 25 AC3 6 HOH K . ? HOH A 228 . ? 1_555 ? 26 AC3 6 HOH K . ? HOH A 231 . ? 1_555 ? 27 AC3 6 HOH K . ? HOH A 237 . ? 1_555 ? 28 AC4 5 U A 22 ? U A 22 . ? 1_555 ? 29 AC4 5 G A 23 ? G A 23 . ? 1_555 ? 30 AC4 5 CAC J . ? CAC A 109 . ? 1_555 ? 31 AC4 5 HOH K . ? HOH A 255 . ? 1_555 ? 32 AC4 5 HOH K . ? HOH A 278 . ? 1_555 ? 33 AC5 5 U A 7 ? U A 7 . ? 1_555 ? 34 AC5 5 G A 8 ? G A 8 . ? 1_555 ? 35 AC5 5 G A 37 ? G A 37 . ? 1_555 ? 36 AC5 5 HOH K . ? HOH A 273 . ? 1_555 ? 37 AC5 5 HOH K . ? HOH A 299 . ? 1_555 ? 38 AC6 6 G A 48 ? G A 48 . ? 1_555 ? 39 AC6 6 G A 60 ? G A 60 . ? 1_555 ? 40 AC6 6 G A 61 ? G A 61 . ? 1_555 ? 41 AC6 6 C A 62 ? C A 62 . ? 1_555 ? 42 AC6 6 IRI H . ? IRI A 107 . ? 1_555 ? 43 AC6 6 HOH K . ? HOH A 292 . ? 1_555 ? 44 AC7 5 U A 58 ? U A 58 . ? 1_555 ? 45 AC7 5 G A 59 ? G A 59 . ? 1_555 ? 46 AC7 5 IRI G . ? IRI A 106 . ? 1_555 ? 47 AC7 5 HOH K . ? HOH A 203 . ? 7_555 ? 48 AC7 5 HOH K . ? HOH A 232 . ? 7_555 ? 49 AC8 4 G A 1 ? G A 1 . ? 1_455 ? 50 AC8 4 C A 10 ? C A 10 . ? 1_555 ? 51 AC8 4 C A 30 ? C A 30 . ? 1_555 ? 52 AC8 4 HOH K . ? HOH A 230 . ? 1_555 ? 53 AC9 6 U A 22 ? U A 22 . ? 1_555 ? 54 AC9 6 G A 23 ? G A 23 . ? 1_555 ? 55 AC9 6 G A 24 ? G A 24 . ? 1_555 ? 56 AC9 6 G A 25 ? G A 25 . ? 1_555 ? 57 AC9 6 MG E . ? MG A 104 . ? 1_555 ? 58 AC9 6 HOH K . ? HOH A 256 . ? 1_555 ? # _atom_sites.entry_id 4XWF _atom_sites.fract_transf_matrix[1][1] 0.024900 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024900 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004257 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AS C IR MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 C 10 10 10 C C A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 G 15 15 15 G G A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 C 18 18 18 C C A . n A 1 19 A 19 19 19 A A A . n A 1 20 G 20 20 20 G G A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 G 25 25 25 G G A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 C 29 29 29 C C A . n A 1 30 C 30 30 30 C C A . n A 1 31 A 31 31 31 A A A . n A 1 32 C 32 32 32 C C A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 G 39 39 39 G G A . n A 1 40 C 40 40 40 C C A . n A 1 41 G 41 41 41 G G A . n A 1 42 A 42 42 42 A A A . n A 1 43 C 43 43 43 C C A . n A 1 44 C 44 44 44 C C A . n A 1 45 C 45 45 45 C C A . n A 1 46 U 46 46 46 U U A . n A 1 47 U 47 47 47 U U A . n A 1 48 G 48 48 48 G G A . n A 1 49 C 49 49 49 C C A . n A 1 50 C 50 50 50 C C A . n A 1 51 G 51 51 51 G G A . n A 1 52 C 52 52 52 C C A . n A 1 53 C 53 53 53 C C A . n A 1 54 C 54 54 54 C C A . n A 1 55 G 55 55 55 G G A . n A 1 56 C 56 56 56 C C A . n A 1 57 C 57 57 57 C C A . n A 1 58 U 58 58 58 U U A . n A 1 59 G 59 59 59 G G A . n A 1 60 G 60 60 60 G G A . n A 1 61 G 61 61 61 G G A . n A 1 62 C 62 62 62 C C A . n A 1 63 A 63 63 63 A A A . n A 1 64 A 64 64 64 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMZ 1 101 101 AMZ AMZ A . C 3 MG 1 102 201 MG MG A . D 3 MG 1 103 202 MG MG A . E 3 MG 1 104 203 MG MG A . F 4 IRI 1 105 301 IRI IRI A . G 4 IRI 1 106 302 IRI IRI A . H 4 IRI 1 107 303 IRI IRI A . I 4 IRI 1 108 304 IRI IRI A . J 5 CAC 1 109 401 CAC CAC A . K 6 HOH 1 201 577 HOH HOH A . K 6 HOH 2 202 531 HOH HOH A . K 6 HOH 3 203 563 HOH HOH A . K 6 HOH 4 204 556 HOH HOH A . K 6 HOH 5 205 597 HOH HOH A . K 6 HOH 6 206 528 HOH HOH A . K 6 HOH 7 207 515 HOH HOH A . K 6 HOH 8 208 604 HOH HOH A . K 6 HOH 9 209 532 HOH HOH A . K 6 HOH 10 210 502 HOH HOH A . K 6 HOH 11 211 545 HOH HOH A . K 6 HOH 12 212 552 HOH HOH A . K 6 HOH 13 213 574 HOH HOH A . K 6 HOH 14 214 576 HOH HOH A . K 6 HOH 15 215 518 HOH HOH A . K 6 HOH 16 216 523 HOH HOH A . K 6 HOH 17 217 547 HOH HOH A . K 6 HOH 18 218 555 HOH HOH A . K 6 HOH 19 219 507 HOH HOH A . K 6 HOH 20 220 521 HOH HOH A . K 6 HOH 21 221 575 HOH HOH A . K 6 HOH 22 222 501 HOH HOH A . K 6 HOH 23 223 562 HOH HOH A . K 6 HOH 24 224 509 HOH HOH A . K 6 HOH 25 225 559 HOH HOH A . K 6 HOH 26 226 594 HOH HOH A . K 6 HOH 27 227 541 HOH HOH A . K 6 HOH 28 228 607 HOH HOH A . K 6 HOH 29 229 508 HOH HOH A . K 6 HOH 30 230 596 HOH HOH A . K 6 HOH 31 231 568 HOH HOH A . K 6 HOH 32 232 579 HOH HOH A . K 6 HOH 33 233 510 HOH HOH A . K 6 HOH 34 234 540 HOH HOH A . K 6 HOH 35 235 595 HOH HOH A . K 6 HOH 36 236 511 HOH HOH A . K 6 HOH 37 237 558 HOH HOH A . K 6 HOH 38 238 550 HOH HOH A . K 6 HOH 39 239 512 HOH HOH A . K 6 HOH 40 240 514 HOH HOH A . K 6 HOH 41 241 560 HOH HOH A . K 6 HOH 42 242 564 HOH HOH A . K 6 HOH 43 243 580 HOH HOH A . K 6 HOH 44 244 598 HOH HOH A . K 6 HOH 45 245 544 HOH HOH A . K 6 HOH 46 246 534 HOH HOH A . K 6 HOH 47 247 524 HOH HOH A . K 6 HOH 48 248 513 HOH HOH A . K 6 HOH 49 249 591 HOH HOH A . K 6 HOH 50 250 587 HOH HOH A . K 6 HOH 51 251 567 HOH HOH A . K 6 HOH 52 252 561 HOH HOH A . K 6 HOH 53 253 573 HOH HOH A . K 6 HOH 54 254 569 HOH HOH A . K 6 HOH 55 255 503 HOH HOH A . K 6 HOH 56 256 504 HOH HOH A . K 6 HOH 57 257 505 HOH HOH A . K 6 HOH 58 258 506 HOH HOH A . K 6 HOH 59 259 516 HOH HOH A . K 6 HOH 60 260 517 HOH HOH A . K 6 HOH 61 261 519 HOH HOH A . K 6 HOH 62 262 520 HOH HOH A . K 6 HOH 63 263 522 HOH HOH A . K 6 HOH 64 264 525 HOH HOH A . K 6 HOH 65 265 526 HOH HOH A . K 6 HOH 66 266 527 HOH HOH A . K 6 HOH 67 267 529 HOH HOH A . K 6 HOH 68 268 530 HOH HOH A . K 6 HOH 69 269 533 HOH HOH A . K 6 HOH 70 270 535 HOH HOH A . K 6 HOH 71 271 536 HOH HOH A . K 6 HOH 72 272 537 HOH HOH A . K 6 HOH 73 273 538 HOH HOH A . K 6 HOH 74 274 539 HOH HOH A . K 6 HOH 75 275 542 HOH HOH A . K 6 HOH 76 276 543 HOH HOH A . K 6 HOH 77 277 546 HOH HOH A . K 6 HOH 78 278 548 HOH HOH A . K 6 HOH 79 279 549 HOH HOH A . K 6 HOH 80 280 551 HOH HOH A . K 6 HOH 81 281 553 HOH HOH A . K 6 HOH 82 282 554 HOH HOH A . K 6 HOH 83 283 557 HOH HOH A . K 6 HOH 84 284 565 HOH HOH A . K 6 HOH 85 285 566 HOH HOH A . K 6 HOH 86 286 570 HOH HOH A . K 6 HOH 87 287 571 HOH HOH A . K 6 HOH 88 288 572 HOH HOH A . K 6 HOH 89 289 578 HOH HOH A . K 6 HOH 90 290 581 HOH HOH A . K 6 HOH 91 291 582 HOH HOH A . K 6 HOH 92 292 583 HOH HOH A . K 6 HOH 93 293 584 HOH HOH A . K 6 HOH 94 294 585 HOH HOH A . K 6 HOH 95 295 586 HOH HOH A . K 6 HOH 96 296 588 HOH HOH A . K 6 HOH 97 297 589 HOH HOH A . K 6 HOH 98 298 590 HOH HOH A . K 6 HOH 99 299 592 HOH HOH A . K 6 HOH 100 300 593 HOH HOH A . K 6 HOH 101 301 599 HOH HOH A . K 6 HOH 102 302 600 HOH HOH A . K 6 HOH 103 303 601 HOH HOH A . K 6 HOH 104 304 602 HOH HOH A . K 6 HOH 105 305 603 HOH HOH A . K 6 HOH 106 306 605 HOH HOH A . K 6 HOH 107 307 606 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 253 ? K HOH . 2 1 A HOH 254 ? K HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 OP2 ? A C 29 ? A C 29 ? 1_555 172.3 ? 2 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O5 ? B AMZ . ? A AMZ 101 ? 1_555 86.2 ? 3 OP2 ? A C 29 ? A C 29 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O5 ? B AMZ . ? A AMZ 101 ? 1_555 98.0 ? 4 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 221 ? 1_555 87.4 ? 5 OP2 ? A C 29 ? A C 29 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 221 ? 1_555 89.4 ? 6 O5 ? B AMZ . ? A AMZ 101 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 221 ? 1_555 169.4 ? 7 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 222 ? 1_555 94.2 ? 8 OP2 ? A C 29 ? A C 29 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 222 ? 1_555 92.9 ? 9 O5 ? B AMZ . ? A AMZ 101 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 222 ? 1_555 80.1 ? 10 O ? K HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 222 ? 1_555 92.0 ? 11 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 225 ? 1_555 87.6 ? 12 OP2 ? A C 29 ? A C 29 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 225 ? 1_555 85.3 ? 13 O5 ? B AMZ . ? A AMZ 101 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 225 ? 1_555 100.4 ? 14 O ? K HOH . ? A HOH 221 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 225 ? 1_555 87.8 ? 15 O ? K HOH . ? A HOH 222 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 225 ? 1_555 178.2 ? 16 O4 ? A U 22 ? A U 22 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 79.8 ? 17 O4 ? A U 22 ? A U 22 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O1 ? J CAC . ? A CAC 109 ? 1_555 164.2 ? 18 O6 ? A G 23 ? A G 23 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O1 ? J CAC . ? A CAC 109 ? 1_555 93.3 ? 19 O4 ? A U 22 ? A U 22 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O2 ? J CAC . ? A CAC 109 ? 1_555 97.7 ? 20 O6 ? A G 23 ? A G 23 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O2 ? J CAC . ? A CAC 109 ? 1_555 95.6 ? 21 O1 ? J CAC . ? A CAC 109 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O2 ? J CAC . ? A CAC 109 ? 1_555 68.6 ? 22 O4 ? A U 22 ? A U 22 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 255 ? 1_555 93.0 ? 23 O6 ? A G 23 ? A G 23 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 255 ? 1_555 172.8 ? 24 O1 ? J CAC . ? A CAC 109 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 255 ? 1_555 93.6 ? 25 O2 ? J CAC . ? A CAC 109 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 255 ? 1_555 85.3 ? 26 O4 ? A U 22 ? A U 22 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 95.2 ? 27 O6 ? A G 23 ? A G 23 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 113.6 ? 28 O1 ? J CAC . ? A CAC 109 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 100.5 ? 29 O2 ? J CAC . ? A CAC 109 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 149.7 ? 30 O ? K HOH . ? A HOH 255 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 66.8 ? 31 O2 ? A C 52 ? A C 52 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 210 ? 7_555 88.5 ? 32 O2 ? A C 52 ? A C 52 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 174.5 ? 33 O ? K HOH . ? A HOH 210 ? 7_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 96.8 ? 34 O2 ? A C 52 ? A C 52 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 228 ? 1_555 90.9 ? 35 O ? K HOH . ? A HOH 210 ? 7_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 228 ? 1_555 80.5 ? 36 O ? K HOH . ? A HOH 214 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 228 ? 1_555 91.2 ? 37 O2 ? A C 52 ? A C 52 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 231 ? 1_555 95.9 ? 38 O ? K HOH . ? A HOH 210 ? 7_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 231 ? 1_555 97.7 ? 39 O ? K HOH . ? A HOH 214 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 231 ? 1_555 82.2 ? 40 O ? K HOH . ? A HOH 228 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 231 ? 1_555 172.9 ? 41 O2 ? A C 52 ? A C 52 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 237 ? 1_555 90.8 ? 42 O ? K HOH . ? A HOH 210 ? 7_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 237 ? 1_555 168.5 ? 43 O ? K HOH . ? A HOH 214 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 237 ? 1_555 84.2 ? 44 O ? K HOH . ? A HOH 228 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 237 ? 1_555 88.0 ? 45 O ? K HOH . ? A HOH 231 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 237 ? 1_555 93.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-09 2 'Structure model' 1 1 2017-09-27 3 'Structure model' 1 2 2019-12-25 4 'Structure model' 1 3 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 3 'Structure model' 'Author supporting evidence' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' pdbx_audit_support 3 2 'Structure model' pdbx_struct_oper_list 4 2 'Structure model' software 5 3 'Structure model' pdbx_audit_support 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 9 4 'Structure model' pdbx_initial_refinement_model 10 4 'Structure model' pdbx_struct_conn_angle 11 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_CSD' 2 2 'Structure model' '_pdbx_audit_support.funding_organization' 3 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 11 4 'Structure model' '_pdbx_struct_conn_angle.value' 12 4 'Structure model' '_struct_conn.pdbx_dist_value' 13 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.9_1692)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 G _pdbx_validate_close_contact.auth_seq_id_1 60 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 A G 34 ? ? C6 A G 34 ? ? O6 A G 34 ? ? 124.64 128.60 -3.96 0.60 N 2 1 "O4'" A G 51 ? ? "C1'" A G 51 ? ? N9 A G 51 ? ? 113.53 108.50 5.03 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AMZ O5 O N N 38 AMZ C6 C N N 39 AMZ N2 N N N 40 AMZ C3A C Y N 41 AMZ C7A C Y N 42 AMZ N3 N N N 43 AMZ N1 N Y N 44 AMZ C5 C Y N 45 AMZ N N Y N 46 AMZ C1 C N R 47 AMZ C2 C N R 48 AMZ C3 C N S 49 AMZ O2 O N N 50 AMZ O1 O N N 51 AMZ O O N N 52 AMZ C C N R 53 AMZ C4 C N N 54 AMZ O3 O N N 55 AMZ P P N N 56 AMZ OP1 O N N 57 AMZ O4 O N N 58 AMZ OP2 O N N 59 AMZ H11 H N N 60 AMZ H12 H N N 61 AMZ H9 H N N 62 AMZ H10 H N N 63 AMZ H13 H N N 64 AMZ H2 H N N 65 AMZ H3 H N N 66 AMZ H4 H N N 67 AMZ H5 H N N 68 AMZ H1 H N N 69 AMZ H6 H N N 70 AMZ H7 H N N 71 AMZ H8 H N N 72 AMZ H15 H N N 73 AMZ H14 H N N 74 C OP3 O N N 75 C P P N N 76 C OP1 O N N 77 C OP2 O N N 78 C "O5'" O N N 79 C "C5'" C N N 80 C "C4'" C N R 81 C "O4'" O N N 82 C "C3'" C N S 83 C "O3'" O N N 84 C "C2'" C N R 85 C "O2'" O N N 86 C "C1'" C N R 87 C N1 N N N 88 C C2 C N N 89 C O2 O N N 90 C N3 N N N 91 C C4 C N N 92 C N4 N N N 93 C C5 C N N 94 C C6 C N N 95 C HOP3 H N N 96 C HOP2 H N N 97 C "H5'" H N N 98 C "H5''" H N N 99 C "H4'" H N N 100 C "H3'" H N N 101 C "HO3'" H N N 102 C "H2'" H N N 103 C "HO2'" H N N 104 C "H1'" H N N 105 C H41 H N N 106 C H42 H N N 107 C H5 H N N 108 C H6 H N N 109 CAC AS AS N N 110 CAC O1 O N N 111 CAC O2 O N N 112 CAC C1 C N N 113 CAC C2 C N N 114 CAC H11 H N N 115 CAC H12 H N N 116 CAC H13 H N N 117 CAC H21 H N N 118 CAC H22 H N N 119 CAC H23 H N N 120 G OP3 O N N 121 G P P N N 122 G OP1 O N N 123 G OP2 O N N 124 G "O5'" O N N 125 G "C5'" C N N 126 G "C4'" C N R 127 G "O4'" O N N 128 G "C3'" C N S 129 G "O3'" O N N 130 G "C2'" C N R 131 G "O2'" O N N 132 G "C1'" C N R 133 G N9 N Y N 134 G C8 C Y N 135 G N7 N Y N 136 G C5 C Y N 137 G C6 C N N 138 G O6 O N N 139 G N1 N N N 140 G C2 C N N 141 G N2 N N N 142 G N3 N N N 143 G C4 C Y N 144 G HOP3 H N N 145 G HOP2 H N N 146 G "H5'" H N N 147 G "H5''" H N N 148 G "H4'" H N N 149 G "H3'" H N N 150 G "HO3'" H N N 151 G "H2'" H N N 152 G "HO2'" H N N 153 G "H1'" H N N 154 G H8 H N N 155 G H1 H N N 156 G H21 H N N 157 G H22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 IRI IR IR N N 162 IRI N1 N N N 163 IRI N2 N N N 164 IRI N3 N N N 165 IRI N4 N N N 166 IRI N5 N N N 167 IRI N6 N N N 168 IRI HN11 H N N 169 IRI HN12 H N N 170 IRI HN13 H N N 171 IRI HN21 H N N 172 IRI HN22 H N N 173 IRI HN23 H N N 174 IRI HN31 H N N 175 IRI HN32 H N N 176 IRI HN33 H N N 177 IRI HN41 H N N 178 IRI HN42 H N N 179 IRI HN43 H N N 180 IRI HN51 H N N 181 IRI HN52 H N N 182 IRI HN53 H N N 183 IRI HN61 H N N 184 IRI HN62 H N N 185 IRI HN63 H N N 186 MG MG MG N N 187 U OP3 O N N 188 U P P N N 189 U OP1 O N N 190 U OP2 O N N 191 U "O5'" O N N 192 U "C5'" C N N 193 U "C4'" C N R 194 U "O4'" O N N 195 U "C3'" C N S 196 U "O3'" O N N 197 U "C2'" C N R 198 U "O2'" O N N 199 U "C1'" C N R 200 U N1 N N N 201 U C2 C N N 202 U O2 O N N 203 U N3 N N N 204 U C4 C N N 205 U O4 O N N 206 U C5 C N N 207 U C6 C N N 208 U HOP3 H N N 209 U HOP2 H N N 210 U "H5'" H N N 211 U "H5''" H N N 212 U "H4'" H N N 213 U "H3'" H N N 214 U "HO3'" H N N 215 U "H2'" H N N 216 U "HO2'" H N N 217 U "H1'" H N N 218 U H3 H N N 219 U H5 H N N 220 U H6 H N N 221 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 AMZ O5 C6 doub N N 40 AMZ C6 N2 sing N N 41 AMZ C6 C3A sing N N 42 AMZ N2 H11 sing N N 43 AMZ N2 H12 sing N N 44 AMZ C3A C7A doub Y N 45 AMZ C3A N1 sing Y N 46 AMZ C7A N3 sing N N 47 AMZ C7A N sing Y N 48 AMZ N3 H9 sing N N 49 AMZ N3 H10 sing N N 50 AMZ N1 C5 doub Y N 51 AMZ C5 N sing Y N 52 AMZ C5 H13 sing N N 53 AMZ N C1 sing N N 54 AMZ C1 C2 sing N N 55 AMZ C1 O sing N N 56 AMZ C1 H2 sing N N 57 AMZ C2 C3 sing N N 58 AMZ C2 O1 sing N N 59 AMZ C2 H3 sing N N 60 AMZ C3 O2 sing N N 61 AMZ C3 C sing N N 62 AMZ C3 H4 sing N N 63 AMZ O2 H5 sing N N 64 AMZ O1 H1 sing N N 65 AMZ O C sing N N 66 AMZ C C4 sing N N 67 AMZ C H6 sing N N 68 AMZ C4 O3 sing N N 69 AMZ C4 H7 sing N N 70 AMZ C4 H8 sing N N 71 AMZ O3 P sing N N 72 AMZ P OP1 sing N N 73 AMZ P O4 sing N N 74 AMZ P OP2 doub N N 75 AMZ OP1 H15 sing N N 76 AMZ O4 H14 sing N N 77 C OP3 P sing N N 78 C OP3 HOP3 sing N N 79 C P OP1 doub N N 80 C P OP2 sing N N 81 C P "O5'" sing N N 82 C OP2 HOP2 sing N N 83 C "O5'" "C5'" sing N N 84 C "C5'" "C4'" sing N N 85 C "C5'" "H5'" sing N N 86 C "C5'" "H5''" sing N N 87 C "C4'" "O4'" sing N N 88 C "C4'" "C3'" sing N N 89 C "C4'" "H4'" sing N N 90 C "O4'" "C1'" sing N N 91 C "C3'" "O3'" sing N N 92 C "C3'" "C2'" sing N N 93 C "C3'" "H3'" sing N N 94 C "O3'" "HO3'" sing N N 95 C "C2'" "O2'" sing N N 96 C "C2'" "C1'" sing N N 97 C "C2'" "H2'" sing N N 98 C "O2'" "HO2'" sing N N 99 C "C1'" N1 sing N N 100 C "C1'" "H1'" sing N N 101 C N1 C2 sing N N 102 C N1 C6 sing N N 103 C C2 O2 doub N N 104 C C2 N3 sing N N 105 C N3 C4 doub N N 106 C C4 N4 sing N N 107 C C4 C5 sing N N 108 C N4 H41 sing N N 109 C N4 H42 sing N N 110 C C5 C6 doub N N 111 C C5 H5 sing N N 112 C C6 H6 sing N N 113 CAC AS O1 doub N N 114 CAC AS O2 sing N N 115 CAC AS C1 sing N N 116 CAC AS C2 sing N N 117 CAC C1 H11 sing N N 118 CAC C1 H12 sing N N 119 CAC C1 H13 sing N N 120 CAC C2 H21 sing N N 121 CAC C2 H22 sing N N 122 CAC C2 H23 sing N N 123 G OP3 P sing N N 124 G OP3 HOP3 sing N N 125 G P OP1 doub N N 126 G P OP2 sing N N 127 G P "O5'" sing N N 128 G OP2 HOP2 sing N N 129 G "O5'" "C5'" sing N N 130 G "C5'" "C4'" sing N N 131 G "C5'" "H5'" sing N N 132 G "C5'" "H5''" sing N N 133 G "C4'" "O4'" sing N N 134 G "C4'" "C3'" sing N N 135 G "C4'" "H4'" sing N N 136 G "O4'" "C1'" sing N N 137 G "C3'" "O3'" sing N N 138 G "C3'" "C2'" sing N N 139 G "C3'" "H3'" sing N N 140 G "O3'" "HO3'" sing N N 141 G "C2'" "O2'" sing N N 142 G "C2'" "C1'" sing N N 143 G "C2'" "H2'" sing N N 144 G "O2'" "HO2'" sing N N 145 G "C1'" N9 sing N N 146 G "C1'" "H1'" sing N N 147 G N9 C8 sing Y N 148 G N9 C4 sing Y N 149 G C8 N7 doub Y N 150 G C8 H8 sing N N 151 G N7 C5 sing Y N 152 G C5 C6 sing N N 153 G C5 C4 doub Y N 154 G C6 O6 doub N N 155 G C6 N1 sing N N 156 G N1 C2 sing N N 157 G N1 H1 sing N N 158 G C2 N2 sing N N 159 G C2 N3 doub N N 160 G N2 H21 sing N N 161 G N2 H22 sing N N 162 G N3 C4 sing N N 163 HOH O H1 sing N N 164 HOH O H2 sing N N 165 IRI IR N1 sing N N 166 IRI IR N2 sing N N 167 IRI IR N3 sing N N 168 IRI IR N4 sing N N 169 IRI IR N5 sing N N 170 IRI IR N6 sing N N 171 IRI N1 HN11 sing N N 172 IRI N1 HN12 sing N N 173 IRI N1 HN13 sing N N 174 IRI N2 HN21 sing N N 175 IRI N2 HN22 sing N N 176 IRI N2 HN23 sing N N 177 IRI N3 HN31 sing N N 178 IRI N3 HN32 sing N N 179 IRI N3 HN33 sing N N 180 IRI N4 HN41 sing N N 181 IRI N4 HN42 sing N N 182 IRI N4 HN43 sing N N 183 IRI N5 HN51 sing N N 184 IRI N5 HN52 sing N N 185 IRI N5 HN53 sing N N 186 IRI N6 HN61 sing N N 187 IRI N6 HN62 sing N N 188 IRI N6 HN63 sing N N 189 U OP3 P sing N N 190 U OP3 HOP3 sing N N 191 U P OP1 doub N N 192 U P OP2 sing N N 193 U P "O5'" sing N N 194 U OP2 HOP2 sing N N 195 U "O5'" "C5'" sing N N 196 U "C5'" "C4'" sing N N 197 U "C5'" "H5'" sing N N 198 U "C5'" "H5''" sing N N 199 U "C4'" "O4'" sing N N 200 U "C4'" "C3'" sing N N 201 U "C4'" "H4'" sing N N 202 U "O4'" "C1'" sing N N 203 U "C3'" "O3'" sing N N 204 U "C3'" "C2'" sing N N 205 U "C3'" "H3'" sing N N 206 U "O3'" "HO3'" sing N N 207 U "C2'" "O2'" sing N N 208 U "C2'" "C1'" sing N N 209 U "C2'" "H2'" sing N N 210 U "O2'" "HO2'" sing N N 211 U "C1'" N1 sing N N 212 U "C1'" "H1'" sing N N 213 U N1 C2 sing N N 214 U N1 C6 sing N N 215 U C2 O2 doub N N 216 U C2 N3 sing N N 217 U N3 C4 sing N N 218 U N3 H3 sing N N 219 U C4 O4 doub N N 220 U C4 C5 sing N N 221 U C5 C6 doub N N 222 U C5 H5 sing N N 223 U C6 H6 sing N N 224 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4XWF 'double helix' 4XWF 'a-form double helix' 4XWF 'hairpin loop' 4XWF 'bulge loop' 4XWF 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 12 1_555 A A 28 1_555 -2.101 6.691 -1.884 -32.613 6.458 146.210 1 A_G12:A28_A A 12 ? A 28 ? ? 11 1 A C 29 1_555 A G 24 1_555 0.389 -0.155 -0.148 7.896 -19.528 0.443 2 A_C29:G24_A A 29 ? A 24 ? 19 1 1 A C 30 1_555 A G 23 1_555 0.196 -0.060 0.151 -1.456 -8.181 3.745 3 A_C30:G23_A A 30 ? A 23 ? 19 1 1 A A 31 1_555 A U 22 1_555 0.204 -0.194 0.282 6.121 -9.124 -2.776 4 A_A31:U22_A A 31 ? A 22 ? 20 1 1 A C 32 1_555 A G 21 1_555 0.310 -0.166 -0.014 8.762 -12.060 0.935 5 A_C32:G21_A A 32 ? A 21 ? 19 1 1 A C 33 1_555 A G 20 1_555 0.381 -0.183 -0.355 12.943 -11.954 -0.346 6 A_C33:G20_A A 33 ? A 20 ? 19 1 1 A G 34 1_555 A A 19 1_555 -2.411 -6.908 2.002 -53.134 2.196 -149.021 7 A_G34:A19_A A 34 ? A 19 ? ? 6 1 A G 35 1_555 A U 11 1_555 -2.274 -0.401 -0.368 -22.814 -14.863 8.063 8 A_G35:U11_A A 35 ? A 11 ? 28 1 1 A G 36 1_555 A C 10 1_555 -0.104 -0.035 0.059 -12.179 -8.796 1.167 9 A_G36:C10_A A 36 ? A 10 ? 19 1 1 A G 37 1_555 A A 9 1_555 6.743 -4.560 0.061 1.402 -6.193 -6.064 10 A_G37:A9_A A 37 ? A 9 ? 11 10 1 A A 38 1_555 A G 8 1_555 -6.916 -4.656 -0.011 7.484 -10.315 -9.787 11 A_A38:G8_A A 38 ? A 8 ? 11 10 1 A G 39 1_555 A U 7 1_555 -2.334 -0.622 0.193 10.631 -15.018 -0.497 12 A_G39:U7_A A 39 ? A 7 ? 28 1 1 A C 40 1_555 A G 6 1_555 0.321 -0.183 0.021 7.411 -20.278 -0.277 13 A_C40:G6_A A 40 ? A 6 ? 19 1 1 A G 41 1_555 A C 5 1_555 -0.174 -0.216 -0.001 -0.394 -8.792 0.970 14 A_G41:C5_A A 41 ? A 5 ? 19 1 1 A A 42 1_555 A U 4 1_555 0.306 -0.057 0.259 8.741 -9.852 -1.322 15 A_A42:U4_A A 42 ? A 4 ? 20 1 1 A C 43 1_555 A G 3 1_555 0.682 0.025 -0.131 9.240 -11.844 5.799 16 A_C43:G3_A A 43 ? A 3 ? 19 1 1 A C 44 1_555 A G 2 1_555 0.150 -0.231 -0.244 8.734 -12.103 2.023 17 A_C44:G2_A A 44 ? A 2 ? 19 1 1 A C 45 1_555 A G 1 1_555 0.200 -0.351 0.072 1.969 -8.003 -0.952 18 A_C45:G1_A A 45 ? A 1 ? 19 1 1 A U 46 1_555 A A 64 1_555 -0.344 -0.172 0.170 -12.827 -12.958 0.477 19 A_U46:A64_A A 46 ? A 64 ? 20 1 1 A U 47 1_555 A A 63 1_555 0.000 -0.010 0.331 -2.536 -6.906 -0.778 20 A_U47:A63_A A 47 ? A 63 ? 20 1 1 A G 48 1_555 A C 62 1_555 -0.439 -0.058 0.184 2.009 -10.485 3.475 21 A_G48:C62_A A 48 ? A 62 ? 19 1 1 A C 49 1_555 A G 61 1_555 0.234 -0.179 -0.144 4.144 -10.457 -1.136 22 A_C49:G61_A A 49 ? A 61 ? 19 1 1 A C 50 1_555 A G 60 1_555 0.191 -0.102 0.044 3.736 5.243 1.215 23 A_C50:G60_A A 50 ? A 60 ? 19 1 1 A G 51 1_555 A G 59 1_555 -2.085 -2.374 0.986 2.798 -42.728 123.553 24 A_G51:G59_A A 51 ? A 59 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 29 1_555 A G 24 1_555 A C 30 1_555 A G 23 1_555 -0.675 -2.074 3.370 -3.971 9.754 31.085 -5.271 0.547 2.678 17.580 7.157 32.779 1 AA_C29C30:G23G24_AA A 29 ? A 24 ? A 30 ? A 23 ? 1 A C 30 1_555 A G 23 1_555 A A 31 1_555 A U 22 1_555 -0.496 -1.369 2.870 -0.247 11.418 30.592 -4.039 0.849 2.233 20.755 0.449 32.606 2 AA_C30A31:U22G23_AA A 30 ? A 23 ? A 31 ? A 22 ? 1 A A 31 1_555 A U 22 1_555 A C 32 1_555 A G 21 1_555 0.195 -1.286 3.220 2.210 10.219 30.891 -3.944 0.009 2.677 18.532 -4.008 32.572 3 AA_A31C32:G21U22_AA A 31 ? A 22 ? A 32 ? A 21 ? 1 A C 32 1_555 A G 21 1_555 A C 33 1_555 A G 20 1_555 0.378 -1.718 3.199 2.496 4.008 31.610 -3.811 -0.256 2.984 7.306 -4.550 31.952 4 AA_C32C33:G20G21_AA A 32 ? A 21 ? A 33 ? A 20 ? 1 A C 33 1_555 A G 20 1_555 A G 34 1_555 A A 19 1_555 -3.084 0.983 3.703 20.224 28.597 111.873 0.235 2.069 3.434 17.025 -12.040 115.428 5 AA_C33G34:A19G20_AA A 33 ? A 20 ? A 34 ? A 19 ? 1 A G 34 1_555 A A 19 1_555 A G 35 1_555 A U 11 1_555 1.647 -4.749 4.627 -3.924 -6.645 -35.917 8.733 1.911 3.869 10.625 -6.274 -36.710 6 AA_G34G35:U11A19_AA A 34 ? A 19 ? A 35 ? A 11 ? 1 A G 35 1_555 A U 11 1_555 A G 36 1_555 A C 10 1_555 -1.302 -2.299 3.138 -2.990 3.219 23.511 -6.531 2.231 2.941 7.812 7.257 23.913 7 AA_G35G36:C10U11_AA A 35 ? A 11 ? A 36 ? A 10 ? 1 A G 36 1_555 A C 10 1_555 A G 37 1_555 A A 9 1_555 -1.243 -0.449 3.105 0.916 2.679 63.035 -0.541 1.226 3.070 2.561 -0.875 63.092 8 AA_G36G37:A9C10_AA A 36 ? A 10 ? A 37 ? A 9 ? 1 A G 37 1_555 A A 9 1_555 A A 38 1_555 A G 8 1_555 -0.043 -0.551 3.292 3.139 -0.443 -28.402 1.218 0.630 3.268 0.899 6.373 -28.574 9 AA_G37A38:G8A9_AA A 37 ? A 9 ? A 38 ? A 8 ? 1 A A 38 1_555 A G 8 1_555 A G 39 1_555 A U 7 1_555 1.060 -0.910 3.342 -4.528 2.549 56.383 -1.103 -1.373 3.215 2.691 4.781 56.603 10 AA_A38G39:U7G8_AA A 38 ? A 8 ? A 39 ? A 7 ? 1 A G 39 1_555 A U 7 1_555 A C 40 1_555 A G 6 1_555 -0.103 -1.274 3.275 -1.016 3.150 45.673 -1.909 0.045 3.186 4.052 1.307 45.787 11 AA_G39C40:G6U7_AA A 39 ? A 7 ? A 40 ? A 6 ? 1 A C 40 1_555 A G 6 1_555 A G 41 1_555 A C 5 1_555 -0.628 -1.989 3.403 -2.762 11.349 26.238 -6.394 0.689 2.405 23.571 5.737 28.678 12 AA_C40G41:C5G6_AA A 40 ? A 6 ? A 41 ? A 5 ? 1 A G 41 1_555 A C 5 1_555 A A 42 1_555 A U 4 1_555 -0.483 -1.251 2.990 -3.878 8.656 34.737 -3.108 0.297 2.649 14.174 6.350 35.970 13 AA_G41A42:U4C5_AA A 41 ? A 5 ? A 42 ? A 4 ? 1 A A 42 1_555 A U 4 1_555 A C 43 1_555 A G 3 1_555 0.273 -1.291 3.294 2.354 10.099 32.006 -3.809 -0.106 2.782 17.744 -4.135 33.602 14 AA_A42C43:G3U4_AA A 42 ? A 4 ? A 43 ? A 3 ? 1 A C 43 1_555 A G 3 1_555 A C 44 1_555 A G 2 1_555 -0.432 -1.931 3.211 -0.346 8.818 27.659 -5.593 0.795 2.494 17.877 0.701 29.007 15 AA_C43C44:G2G3_AA A 43 ? A 3 ? A 44 ? A 2 ? 1 A C 44 1_555 A G 2 1_555 A C 45 1_555 A G 1 1_555 0.140 -1.896 3.377 -1.316 9.189 32.355 -4.711 -0.447 2.744 16.081 2.303 33.626 16 AA_C44C45:G1G2_AA A 44 ? A 2 ? A 45 ? A 1 ? 1 A C 45 1_555 A G 1 1_555 A U 46 1_555 A A 64 1_555 1.719 -1.010 3.394 4.696 10.553 43.718 -2.290 -1.806 3.237 13.886 -6.179 45.145 17 AA_C45U46:A64G1_AA A 45 ? A 1 ? A 46 ? A 64 ? 1 A U 46 1_555 A A 64 1_555 A U 47 1_555 A A 63 1_555 0.358 -1.810 3.084 -0.896 3.079 28.982 -4.209 -0.890 2.869 6.129 1.784 29.155 18 AA_U46U47:A63A64_AA A 46 ? A 64 ? A 47 ? A 63 ? 1 A U 47 1_555 A A 63 1_555 A G 48 1_555 A C 62 1_555 0.589 -1.808 3.041 0.160 3.391 29.134 -4.228 -1.132 2.820 6.712 -0.317 29.327 19 AA_U47G48:C62A63_AA A 47 ? A 63 ? A 48 ? A 62 ? 1 A G 48 1_555 A C 62 1_555 A C 49 1_555 A G 61 1_555 -0.828 -1.724 3.158 -1.487 0.187 35.281 -2.868 1.152 3.181 0.308 2.452 35.312 20 AA_G48C49:G61C62_AA A 48 ? A 62 ? A 49 ? A 61 ? 1 A C 49 1_555 A G 61 1_555 A C 50 1_555 A G 60 1_555 -0.507 -2.131 3.335 -1.394 8.879 29.979 -5.522 0.695 2.632 16.698 2.622 31.268 21 AA_C49C50:G60G61_AA A 49 ? A 61 ? A 50 ? A 60 ? 1 A C 50 1_555 A G 60 1_555 A G 51 1_555 A G 59 1_555 -1.549 -2.791 -0.284 -164.256 53.203 98.337 -1.391 0.793 0.186 26.877 82.977 175.201 22 AA_C50G51:G59G60_AA A 50 ? A 60 ? A 51 ? A 59 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM073850 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE' AMZ 3 'MAGNESIUM ION' MG 4 'IRIDIUM HEXAMMINE ION' IRI 5 'CACODYLATE ION' CAC 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4XW7 _pdbx_initial_refinement_model.details ? #