HEADER TRANSFERASE 29-JAN-15 4XWI TITLE X-RAY CRYSTAL STRUCTURE OF CMP-KDO SYNTHASE FROM PSEUDOMONAS TITLE 2 AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CMP-2-KETO-3-DEOXYOCTULOSONIC ACID SYNTHASE,CMP-KDO COMPND 5 SYNTHASE; COMPND 6 EC: 2.7.7.38; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: KDSB, PA2979; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSAEA.01328.A.B1 KEYWDS CMP-KDO SYNTHASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 2 CENTER FOR INFECTIOUS DISEASE, SSGCID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 28-FEB-24 4XWI 1 REMARK LINK REVDAT 4 11-DEC-19 4XWI 1 REMARK REVDAT 3 22-NOV-17 4XWI 1 REMARK REVDAT 2 06-SEP-17 4XWI 1 SOURCE REMARK REVDAT 1 29-APR-15 4XWI 0 JRNL AUTH J.W.FAIRMAN,D.M.DRANOW,T.E.EDWARDS,B.L.STAKER JRNL TITL X-RAY CRYSTAL STRUCTURE OF CMP-KDO SYNTHASE FROM PSEUDOMONAS JRNL TITL 2 AERUGINOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1932) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 53223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.650 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2544 - 4.5779 0.99 4063 150 0.1482 0.1570 REMARK 3 2 4.5779 - 3.6340 1.00 3870 149 0.1378 0.1720 REMARK 3 3 3.6340 - 3.1747 1.00 3816 148 0.1650 0.1900 REMARK 3 4 3.1747 - 2.8845 1.00 3809 141 0.1918 0.2289 REMARK 3 5 2.8845 - 2.6778 1.00 3788 143 0.1833 0.1914 REMARK 3 6 2.6778 - 2.5199 1.00 3750 140 0.1758 0.2048 REMARK 3 7 2.5199 - 2.3937 1.00 3745 142 0.1776 0.2469 REMARK 3 8 2.3937 - 2.2895 1.00 3753 145 0.1856 0.2789 REMARK 3 9 2.2895 - 2.2014 1.00 3730 143 0.1918 0.2740 REMARK 3 10 2.2014 - 2.1254 0.99 3726 139 0.2008 0.2283 REMARK 3 11 2.1254 - 2.0590 1.00 3707 137 0.2188 0.2529 REMARK 3 12 2.0590 - 2.0001 0.99 3700 141 0.2379 0.2725 REMARK 3 13 2.0001 - 1.9474 0.99 3694 143 0.2716 0.3019 REMARK 3 14 1.9474 - 1.9200 0.99 3700 139 0.3009 0.3285 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3775 REMARK 3 ANGLE : 1.015 5173 REMARK 3 CHIRALITY : 0.049 590 REMARK 3 PLANARITY : 0.005 688 REMARK 3 DIHEDRAL : 12.122 1368 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2089 57.1931 5.7148 REMARK 3 T TENSOR REMARK 3 T11: 0.2879 T22: 0.2534 REMARK 3 T33: 0.2259 T12: -0.1077 REMARK 3 T13: 0.0836 T23: -0.0740 REMARK 3 L TENSOR REMARK 3 L11: 3.6136 L22: 6.7021 REMARK 3 L33: 2.8966 L12: 0.1347 REMARK 3 L13: 0.0463 L23: 4.2434 REMARK 3 S TENSOR REMARK 3 S11: -0.0578 S12: -0.4476 S13: 0.3084 REMARK 3 S21: 0.6534 S22: -0.0534 S23: 0.6983 REMARK 3 S31: -0.0873 S32: -0.0146 S33: 0.0885 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 21:63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4294 56.5697 -1.3204 REMARK 3 T TENSOR REMARK 3 T11: 0.2715 T22: 0.2291 REMARK 3 T33: 0.1640 T12: -0.0672 REMARK 3 T13: 0.0475 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.8773 L22: 4.0028 REMARK 3 L33: 2.3009 L12: -0.3251 REMARK 3 L13: 0.5833 L23: -0.3052 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: 0.0448 S13: 0.1282 REMARK 3 S21: -0.1433 S22: -0.0434 S23: 0.0316 REMARK 3 S31: -0.1437 S32: 0.2208 S33: 0.0874 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 64:88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2563 50.3446 4.0885 REMARK 3 T TENSOR REMARK 3 T11: 0.4054 T22: 0.2699 REMARK 3 T33: 0.2667 T12: -0.0359 REMARK 3 T13: -0.0004 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 7.1025 L22: 3.5677 REMARK 3 L33: 8.3886 L12: 4.3680 REMARK 3 L13: -2.6272 L23: -4.1708 REMARK 3 S TENSOR REMARK 3 S11: 0.1880 S12: -0.4319 S13: 0.5364 REMARK 3 S21: 0.4207 S22: 0.0449 S23: 0.2757 REMARK 3 S31: -0.7832 S32: -0.5191 S33: -0.2135 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 89:120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7209 46.8270 11.0598 REMARK 3 T TENSOR REMARK 3 T11: 0.2948 T22: 0.3013 REMARK 3 T33: 0.2435 T12: 0.0033 REMARK 3 T13: 0.0259 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 3.0197 L22: 2.2030 REMARK 3 L33: 4.9636 L12: 1.4214 REMARK 3 L13: -0.1514 L23: -1.2052 REMARK 3 S TENSOR REMARK 3 S11: 0.1832 S12: -0.2084 S13: -0.1689 REMARK 3 S21: 0.3048 S22: -0.2020 S23: -0.0721 REMARK 3 S31: 0.0835 S32: 0.3710 S33: 0.0367 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 121:166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9778 54.1174 28.2202 REMARK 3 T TENSOR REMARK 3 T11: 0.4629 T22: 0.4106 REMARK 3 T33: 0.2429 T12: -0.1703 REMARK 3 T13: -0.0414 T23: 0.0542 REMARK 3 L TENSOR REMARK 3 L11: 1.4050 L22: 1.6593 REMARK 3 L33: 2.8054 L12: -0.9235 REMARK 3 L13: 0.4782 L23: 0.3715 REMARK 3 S TENSOR REMARK 3 S11: -0.2755 S12: -0.0448 S13: 0.1670 REMARK 3 S21: -0.0435 S22: 0.1858 S23: -0.2004 REMARK 3 S31: -0.6944 S32: 0.5445 S33: 0.0848 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 167:183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6861 62.5532 40.3872 REMARK 3 T TENSOR REMARK 3 T11: 0.8964 T22: 0.5644 REMARK 3 T33: 0.5376 T12: -0.2469 REMARK 3 T13: -0.1843 T23: -0.0780 REMARK 3 L TENSOR REMARK 3 L11: 3.1048 L22: 1.3776 REMARK 3 L33: 2.4030 L12: -1.0436 REMARK 3 L13: -0.5696 L23: 1.4981 REMARK 3 S TENSOR REMARK 3 S11: -0.3360 S12: -0.3504 S13: 1.0501 REMARK 3 S21: 0.3110 S22: -0.0728 S23: -0.3952 REMARK 3 S31: -1.2961 S32: 0.5283 S33: 0.3533 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 184:230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5167 48.4070 21.6387 REMARK 3 T TENSOR REMARK 3 T11: 0.4057 T22: 0.3448 REMARK 3 T33: 0.2232 T12: -0.0868 REMARK 3 T13: -0.0292 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 2.0124 L22: 0.8743 REMARK 3 L33: 3.3995 L12: -0.2666 REMARK 3 L13: -0.6949 L23: -0.0956 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: -0.2542 S13: -0.0161 REMARK 3 S21: -0.1079 S22: -0.0039 S23: 0.0027 REMARK 3 S31: -0.1762 S32: 0.0156 S33: 0.0814 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 231:254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2121 64.7759 9.7184 REMARK 3 T TENSOR REMARK 3 T11: 0.4042 T22: 0.3777 REMARK 3 T33: 0.2523 T12: -0.1616 REMARK 3 T13: 0.0119 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 4.0162 L22: 6.3153 REMARK 3 L33: 3.7123 L12: -1.5035 REMARK 3 L13: 0.9721 L23: -2.9608 REMARK 3 S TENSOR REMARK 3 S11: 0.1216 S12: -0.2419 S13: 0.1969 REMARK 3 S21: 0.5075 S22: -0.2873 S23: -0.4715 REMARK 3 S31: -0.2748 S32: 0.4638 S33: 0.1257 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 2:30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6533 46.9543 61.6778 REMARK 3 T TENSOR REMARK 3 T11: 0.5024 T22: 0.5186 REMARK 3 T33: 0.3196 T12: 0.1523 REMARK 3 T13: -0.0702 T23: 0.1144 REMARK 3 L TENSOR REMARK 3 L11: 7.3901 L22: 7.6899 REMARK 3 L33: 7.0127 L12: 4.1254 REMARK 3 L13: 1.7702 L23: 3.0453 REMARK 3 S TENSOR REMARK 3 S11: -0.2960 S12: -0.1468 S13: 0.8401 REMARK 3 S21: -0.3933 S22: 0.0759 S23: 0.3044 REMARK 3 S31: -1.3203 S32: -0.6958 S33: 0.2478 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 31:120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6891 42.4409 60.1141 REMARK 3 T TENSOR REMARK 3 T11: 0.2708 T22: 0.4300 REMARK 3 T33: 0.2548 T12: -0.0013 REMARK 3 T13: 0.0392 T23: 0.1220 REMARK 3 L TENSOR REMARK 3 L11: 1.3428 L22: 2.7811 REMARK 3 L33: 6.4952 L12: -0.0246 REMARK 3 L13: 1.2601 L23: 0.2960 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: 0.1332 S13: 0.1591 REMARK 3 S21: -0.0982 S22: 0.0516 S23: -0.0358 REMARK 3 S31: -0.4037 S32: -0.3424 S33: -0.0324 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 121:235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4725 50.9049 40.9379 REMARK 3 T TENSOR REMARK 3 T11: 0.3806 T22: 0.4588 REMARK 3 T33: 0.2209 T12: -0.0193 REMARK 3 T13: -0.0192 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.2530 L22: 3.3812 REMARK 3 L33: 3.2490 L12: -0.4503 REMARK 3 L13: 0.5628 L23: -1.9359 REMARK 3 S TENSOR REMARK 3 S11: -0.1509 S12: -0.2518 S13: 0.0454 REMARK 3 S21: 0.1201 S22: 0.1395 S23: 0.1305 REMARK 3 S31: -0.3285 S32: -0.1362 S33: 0.0072 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53400 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.570 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS WELL C12 - 37.5% EACH OF MPD, REMARK 280 PEG1000, AND PEG3350 + 0.1 M TRIS/BICINE, PH 8.50, + 0.09M EACH REMARK 280 OF SODIUM NITRATE, DIBASIC SODIUM PHOSPHATE, AND AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.15667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 154.31333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 154.31333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.15667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A TETRAMER GENERATED FROM THE DIMER IN REMARK 300 THE ASYMMETRIC UNIT BY THE OPERATION: -X+1, -Y, Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 14 REMARK 465 SER B 15 REMARK 465 THR B 16 REMARK 465 ARG B 17 REMARK 465 LEU B 18 REMARK 465 PRO B 19 REMARK 465 GLY B 20 REMARK 465 LEU B 236 REMARK 465 PRO B 237 REMARK 465 GLY B 238 REMARK 465 VAL B 239 REMARK 465 ASP B 240 REMARK 465 THR B 241 REMARK 465 PRO B 242 REMARK 465 GLU B 243 REMARK 465 ASP B 244 REMARK 465 LEU B 245 REMARK 465 GLU B 246 REMARK 465 ARG B 247 REMARK 465 VAL B 248 REMARK 465 ARG B 249 REMARK 465 ARG B 250 REMARK 465 VAL B 251 REMARK 465 LEU B 252 REMARK 465 GLY B 253 REMARK 465 GLY B 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 75 CG OD1 ND2 REMARK 470 SER A 176 OG REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 THR B 2 OG1 CG2 REMARK 470 ARG B 12 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 13 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 GLN B 24 CG CD OE1 NE2 REMARK 470 ASP B 25 CG OD1 OD2 REMARK 470 ILE B 26 CG1 CG2 CD1 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 ASN B 75 CG OD1 ND2 REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 ARG B 232 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 234 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 16 O HOH A 453 2.15 REMARK 500 OE1 GLU A 131 O HOH A 493 2.17 REMARK 500 O HOH A 611 O HOH A 612 2.18 REMARK 500 O HOH A 466 O HOH A 594 2.19 REMARK 500 O HOH A 508 O HOH A 594 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 402 O HOH B 426 3564 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 103 64.66 -118.32 REMARK 500 PRO A 162 89.68 -63.84 REMARK 500 GLN B 24 -67.69 -143.79 REMARK 500 GLU B 103 70.80 -118.26 REMARK 500 PRO B 162 99.33 -67.49 REMARK 500 ASP B 173 110.24 -160.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 587 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 40 O REMARK 620 2 HOH A 420 O 62.5 REMARK 620 3 HOH A 421 O 61.3 2.1 REMARK 620 4 HOH A 435 O 62.0 3.4 1.8 REMARK 620 5 GLY B 62 O 62.6 0.1 2.2 3.4 REMARK 620 6 HOH B 428 O 60.4 2.2 1.3 3.0 2.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-PSAEA.01328.A RELATED DB: TARGETTRACK DBREF 4XWI A 1 254 UNP Q9HZM5 KDSB_PSEAE 1 254 DBREF 4XWI B 1 254 UNP Q9HZM5 KDSB_PSEAE 1 254 SEQADV 4XWI MET A -7 UNP Q9HZM5 INITIATING METHIONINE SEQADV 4XWI ALA A -6 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS A -5 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS A -4 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS A -3 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS A -2 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS A -1 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS A 0 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI MET B -7 UNP Q9HZM5 INITIATING METHIONINE SEQADV 4XWI ALA B -6 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS B -5 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS B -4 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS B -3 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS B -2 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS B -1 UNP Q9HZM5 EXPRESSION TAG SEQADV 4XWI HIS B 0 UNP Q9HZM5 EXPRESSION TAG SEQRES 1 A 262 MET ALA HIS HIS HIS HIS HIS HIS MET THR GLN ALA PHE SEQRES 2 A 262 THR VAL VAL ILE PRO ALA ARG TYR ALA SER THR ARG LEU SEQRES 3 A 262 PRO GLY LYS PRO LEU GLN ASP ILE ALA GLY GLN PRO MET SEQRES 4 A 262 ILE GLN ARG VAL TRP ASN GLN ALA ARG LYS SER ALA ALA SEQRES 5 A 262 SER ARG VAL VAL VAL ALA THR ASP ASP GLU ARG ILE LEU SEQRES 6 A 262 ALA ALA CYS GLN GLY PHE GLY ALA GLU ALA LEU LEU THR SEQRES 7 A 262 ARG ALA GLU HIS ASN SER GLY THR ASP ARG LEU GLU GLU SEQRES 8 A 262 VAL ALA SER ARG LEU GLY LEU ALA SER ASP ALA ILE VAL SEQRES 9 A 262 VAL ASN VAL GLN GLY ASP GLU PRO LEU ILE PRO PRO ALA SEQRES 10 A 262 LEU ILE ASP GLN VAL ALA ALA ASN LEU ALA ALA HIS PRO SEQRES 11 A 262 GLU ALA ALA ILE ALA THR LEU ALA GLU PRO ILE HIS GLU SEQRES 12 A 262 VAL SER ALA LEU PHE ASN PRO ASN VAL VAL LYS VAL ALA SEQRES 13 A 262 THR ASP ILE ASP GLY LEU ALA LEU THR PHE SER ARG ALA SEQRES 14 A 262 PRO LEU PRO TRP ALA ARG ASP ALA PHE ALA ARG ASP ARG SEQRES 15 A 262 ASP SER LEU PRO GLU GLY VAL PRO TYR ARG ARG HIS ILE SEQRES 16 A 262 GLY ILE TYR ALA TYR ARG VAL GLY PHE LEU ALA ASP PHE SEQRES 17 A 262 VAL ALA TRP GLY PRO CYS TRP LEU GLU ASN ALA GLU SER SEQRES 18 A 262 LEU GLU GLN LEU ARG ALA LEU TRP HIS GLY VAL ARG ILE SEQRES 19 A 262 HIS VAL ALA ASP ALA ARG GLU ASN MET LEU PRO GLY VAL SEQRES 20 A 262 ASP THR PRO GLU ASP LEU GLU ARG VAL ARG ARG VAL LEU SEQRES 21 A 262 GLY GLY SEQRES 1 B 262 MET ALA HIS HIS HIS HIS HIS HIS MET THR GLN ALA PHE SEQRES 2 B 262 THR VAL VAL ILE PRO ALA ARG TYR ALA SER THR ARG LEU SEQRES 3 B 262 PRO GLY LYS PRO LEU GLN ASP ILE ALA GLY GLN PRO MET SEQRES 4 B 262 ILE GLN ARG VAL TRP ASN GLN ALA ARG LYS SER ALA ALA SEQRES 5 B 262 SER ARG VAL VAL VAL ALA THR ASP ASP GLU ARG ILE LEU SEQRES 6 B 262 ALA ALA CYS GLN GLY PHE GLY ALA GLU ALA LEU LEU THR SEQRES 7 B 262 ARG ALA GLU HIS ASN SER GLY THR ASP ARG LEU GLU GLU SEQRES 8 B 262 VAL ALA SER ARG LEU GLY LEU ALA SER ASP ALA ILE VAL SEQRES 9 B 262 VAL ASN VAL GLN GLY ASP GLU PRO LEU ILE PRO PRO ALA SEQRES 10 B 262 LEU ILE ASP GLN VAL ALA ALA ASN LEU ALA ALA HIS PRO SEQRES 11 B 262 GLU ALA ALA ILE ALA THR LEU ALA GLU PRO ILE HIS GLU SEQRES 12 B 262 VAL SER ALA LEU PHE ASN PRO ASN VAL VAL LYS VAL ALA SEQRES 13 B 262 THR ASP ILE ASP GLY LEU ALA LEU THR PHE SER ARG ALA SEQRES 14 B 262 PRO LEU PRO TRP ALA ARG ASP ALA PHE ALA ARG ASP ARG SEQRES 15 B 262 ASP SER LEU PRO GLU GLY VAL PRO TYR ARG ARG HIS ILE SEQRES 16 B 262 GLY ILE TYR ALA TYR ARG VAL GLY PHE LEU ALA ASP PHE SEQRES 17 B 262 VAL ALA TRP GLY PRO CYS TRP LEU GLU ASN ALA GLU SER SEQRES 18 B 262 LEU GLU GLN LEU ARG ALA LEU TRP HIS GLY VAL ARG ILE SEQRES 19 B 262 HIS VAL ALA ASP ALA ARG GLU ASN MET LEU PRO GLY VAL SEQRES 20 B 262 ASP THR PRO GLU ASP LEU GLU ARG VAL ARG ARG VAL LEU SEQRES 21 B 262 GLY GLY HET SO4 A 301 5 HET NA B 301 1 HET SO4 B 302 5 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 NA NA 1+ FORMUL 6 HOH *355(H2 O) HELIX 1 AA1 GLY A 20 LEU A 23 5 4 HELIX 2 AA2 MET A 31 LYS A 41 1 11 HELIX 3 AA3 ASP A 53 PHE A 63 1 11 HELIX 4 AA4 SER A 76 GLY A 89 1 14 HELIX 5 AA5 PRO A 107 HIS A 121 1 15 HELIX 6 AA6 GLU A 135 PHE A 140 1 6 HELIX 7 AA7 ALA A 166 ASP A 173 1 8 HELIX 8 AA8 VAL A 194 GLY A 204 1 11 HELIX 9 AA9 CYS A 206 SER A 213 1 8 HELIX 10 AB1 GLU A 215 HIS A 222 1 8 HELIX 11 AB2 THR A 241 LEU A 252 1 12 HELIX 12 AB3 PRO B 30 LYS B 41 1 12 HELIX 13 AB4 ASP B 53 PHE B 63 1 11 HELIX 14 AB5 SER B 76 LEU B 88 1 13 HELIX 15 AB6 PRO B 107 HIS B 121 1 15 HELIX 16 AB7 GLU B 135 PHE B 140 1 6 HELIX 17 AB8 ALA B 166 ASP B 173 1 8 HELIX 18 AB9 VAL B 194 GLY B 204 1 11 HELIX 19 AC1 CYS B 206 SER B 213 1 8 HELIX 20 AC2 GLN B 216 HIS B 222 1 7 SHEET 1 AA1 7 GLU A 66 LEU A 69 0 SHEET 2 AA1 7 ARG A 46 THR A 51 1 N VAL A 49 O LEU A 68 SHEET 3 AA1 7 THR A 6 ALA A 11 1 N VAL A 7 O ARG A 46 SHEET 4 AA1 7 ILE A 95 ASN A 98 1 O VAL A 97 N THR A 6 SHEET 5 AA1 7 ARG A 184 ARG A 193 -1 O TYR A 192 N VAL A 96 SHEET 6 AA1 7 ILE A 126 PRO A 132 -1 N GLU A 131 O ARG A 185 SHEET 7 AA1 7 ILE A 226 ASP A 230 1 O HIS A 227 N ILE A 126 SHEET 1 AA2 2 ASP A 25 ILE A 26 0 SHEET 2 AA2 2 GLN A 29 PRO A 30 -1 O GLN A 29 N ILE A 26 SHEET 1 AA3 2 LYS A 146 THR A 149 0 SHEET 2 AA3 2 ALA A 155 SER A 159 -1 O LEU A 156 N ALA A 148 SHEET 1 AA4 7 ALA B 67 LEU B 69 0 SHEET 2 AA4 7 ARG B 46 THR B 51 1 N VAL B 49 O LEU B 68 SHEET 3 AA4 7 PHE B 5 ALA B 11 1 N ALA B 11 O ALA B 50 SHEET 4 AA4 7 ILE B 95 VAL B 99 1 O VAL B 97 N THR B 6 SHEET 5 AA4 7 ARG B 184 ARG B 193 -1 O TYR B 192 N VAL B 96 SHEET 6 AA4 7 ILE B 126 PRO B 132 -1 N GLU B 131 O ARG B 185 SHEET 7 AA4 7 ILE B 226 ASP B 230 1 O HIS B 227 N THR B 128 SHEET 1 AA5 2 LYS B 146 THR B 149 0 SHEET 2 AA5 2 ALA B 155 SER B 159 -1 O LEU B 156 N ALA B 148 LINK O ARG A 40 NA NA B 301 1555 3564 3.19 LINK O HOH A 420 NA NA B 301 2665 1555 2.58 LINK O HOH A 421 NA NA B 301 2665 1555 2.37 LINK O HOH A 435 NA NA B 301 2665 1555 2.89 LINK O GLY B 62 NA NA B 301 1555 1555 2.61 LINK NA NA B 301 O HOH B 428 1555 1555 2.56 CISPEP 1 LEU A 163 PRO A 164 0 -2.74 CISPEP 2 LEU B 23 GLN B 24 0 5.62 CISPEP 3 GLN B 24 ASP B 25 0 -4.24 CISPEP 4 ILE B 26 ALA B 27 0 3.90 CISPEP 5 LEU B 163 PRO B 164 0 -5.11 SITE 1 AC1 7 GLN A 29 ARG A 40 HOH A 404 HOH A 406 SITE 2 AC1 7 HOH A 496 ARG B 40 LYS B 41 SITE 1 AC2 6 ARG A 40 HOH A 420 HOH A 421 HOH A 435 SITE 2 AC2 6 GLY B 62 HOH B 428 SITE 1 AC3 2 HOH A 571 ARG B 167 CRYST1 71.370 71.370 231.470 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014011 0.008090 0.000000 0.00000 SCALE2 0.000000 0.016179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004320 0.00000