HEADER TRANSCRIPTION/DNA 30-JAN-15 4XXE TITLE STRUCTURE OF AGRA LYTTR DOMAIN IN COMPLEX WITH PROMOTERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACCESSORY GENE REGULATOR A; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 140-238; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*TP*AP*CP*AP*GP*TP*TP*AP*GP*GP*CP*AP*A)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*AP*TP*TP*GP*CP*CP*TP*AP*AP*CP*TP*GP*TP*AP*G)- COMPND 12 3'); COMPND 13 CHAIN: C, F; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*TP*AP*CP*AP*GP*TP*TP*AP*GP*GP*CP*AP*T)-3'); COMPND 17 CHAIN: E; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN COL); SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: COL; SOURCE 5 GENE: AGRA, SACOL2026; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTAPLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.GOPAL,K.RAJASREE REVDAT 3 20-MAR-24 4XXE 1 REMARK REVDAT 2 18-DEC-19 4XXE 1 JRNL REMARK REVDAT 1 06-APR-16 4XXE 0 JRNL AUTH K.RAJASREE,A.FASIM,B.GOPAL JRNL TITL CONFORMATIONAL FEATURES OF THESTAPHYLOCOCCUS JRNL TITL 2 AUREUSAGRA-PROMOTER INTERACTIONS RATIONALIZE QUORUM-SENSING JRNL TITL 3 TRIGGERED GENE EXPRESSION. JRNL REF BIOCHEM BIOPHYS REP V. 6 124 2016 JRNL REFN ESSN 2405-5808 JRNL PMID 28955870 JRNL DOI 10.1016/J.BBREP.2016.03.012 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.319 REMARK 3 R VALUE (WORKING SET) : 0.315 REMARK 3 FREE R VALUE : 0.355 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.500 REMARK 3 FREE R VALUE TEST SET COUNT : 759 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 501 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4570 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.5180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1581 REMARK 3 NUCLEIC ACID ATOMS : 1145 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 131.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.95000 REMARK 3 B22 (A**2) : -2.95000 REMARK 3 B33 (A**2) : 5.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.722 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.931 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 58.993 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.812 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2893 ; 0.009 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 2071 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4144 ; 1.436 ; 1.566 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4777 ; 1.641 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 196 ; 7.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;33.539 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;14.657 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.610 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2547 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 690 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 790 ;10.226 ;12.619 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 789 ;10.215 ;12.616 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 984 ;15.690 ;18.876 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 985 ;15.685 ;18.882 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2103 ;11.479 ;14.352 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2102 ;11.475 ;14.350 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3159 ;18.229 ;21.515 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11854 ;26.626 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11855 ;26.626 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 140 238 D 140 238 11058 0.03 0.05 REMARK 3 2 B 4 16 E 4 16 1972 0.05 0.05 REMARK 3 3 C 1 15 F 1 15 2340 0.01 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4XXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206427. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALA REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8048 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 97.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12700 REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% TACSIMATE PH 7.0 0.1M MES REMARK 280 MONOHYDRATE PH 6.0 25% PEG4000 0.1M COCL2 HEXAHYDRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.55500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.55500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 GLN A 191 CG CD OE1 NE2 REMARK 470 LEU A 192 CG CD1 CD2 REMARK 470 ASP A 194 CG OD1 OD2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 208 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 VAL A 232 CG1 CG2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 VAL D 140 CG1 CG2 REMARK 470 LYS D 146 CG CD CE NZ REMARK 470 VAL D 154 CG1 CG2 REMARK 470 LYS D 187 CG CD CE NZ REMARK 470 GLN D 191 CG CD OE1 NE2 REMARK 470 LEU D 192 CG CD1 CD2 REMARK 470 ASP D 193 CG OD1 OD2 REMARK 470 ASP D 194 CG OD1 OD2 REMARK 470 ARG D 207 CG CD NE CZ NH1 NH2 REMARK 470 HIS D 208 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 216 CG CD CE NZ REMARK 470 VAL D 232 CG1 CG2 REMARK 470 ARG D 233 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 236 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 1 C5' - C4' - C3' ANGL. DEV. = 9.3 DEGREES REMARK 500 DA C 1 C5' - C4' - O4' ANGL. DEV. = 10.1 DEGREES REMARK 500 DA F 1 C5' - C4' - C3' ANGL. DEV. = 9.2 DEGREES REMARK 500 DA F 1 C5' - C4' - O4' ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 177 39.40 -146.34 REMARK 500 ASN D 177 39.26 -145.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 4XXE A 140 238 UNP Q5HEG2 AGRA_STAAC 140 238 DBREF 4XXE B 4 16 PDB 4XXE 4XXE 4 16 DBREF 4XXE C 1 15 PDB 4XXE 4XXE 1 15 DBREF 4XXE D 140 238 UNP Q5HEG2 AGRA_STAAC 140 238 DBREF 4XXE E 4 16 PDB 4XXE 4XXE 4 16 DBREF 4XXE F 1 15 PDB 4XXE 4XXE 1 15 SEQRES 1 A 99 VAL GLU THR ILE GLU LEU LYS ARG GLY SER ASN SER VAL SEQRES 2 A 99 TYR VAL GLN TYR ASP ASP ILE MET PHE PHE GLU SER SER SEQRES 3 A 99 THR LYS SER HIS ARG LEU ILE ALA HIS LEU ASP ASN ARG SEQRES 4 A 99 GLN ILE GLU PHE TYR GLY ASN LEU LYS GLU LEU SER GLN SEQRES 5 A 99 LEU ASP ASP ARG PHE PHE ARG CYS HIS ASN SER PHE VAL SEQRES 6 A 99 VAL ASN ARG HIS ASN ILE GLU SER ILE ASP SER LYS GLU SEQRES 7 A 99 ARG ILE VAL TYR PHE LYS ASN LYS GLU HIS CYS TYR ALA SEQRES 8 A 99 SER VAL ARG ASN VAL LYS LYS ILE SEQRES 1 B 13 DT DA DC DA DG DT DT DA DG DG DC DA DA SEQRES 1 C 15 DA DT DT DG DC DC DT DA DA DC DT DG DT SEQRES 2 C 15 DA DG SEQRES 1 D 99 VAL GLU THR ILE GLU LEU LYS ARG GLY SER ASN SER VAL SEQRES 2 D 99 TYR VAL GLN TYR ASP ASP ILE MET PHE PHE GLU SER SER SEQRES 3 D 99 THR LYS SER HIS ARG LEU ILE ALA HIS LEU ASP ASN ARG SEQRES 4 D 99 GLN ILE GLU PHE TYR GLY ASN LEU LYS GLU LEU SER GLN SEQRES 5 D 99 LEU ASP ASP ARG PHE PHE ARG CYS HIS ASN SER PHE VAL SEQRES 6 D 99 VAL ASN ARG HIS ASN ILE GLU SER ILE ASP SER LYS GLU SEQRES 7 D 99 ARG ILE VAL TYR PHE LYS ASN LYS GLU HIS CYS TYR ALA SEQRES 8 D 99 SER VAL ARG ASN VAL LYS LYS ILE SEQRES 1 E 13 DT DA DC DA DG DT DT DA DG DG DC DA DT SEQRES 1 F 15 DA DT DT DG DC DC DT DA DA DC DT DG DT SEQRES 2 F 15 DA DG HELIX 1 AA1 ASN A 185 GLN A 191 1 7 HELIX 2 AA2 SER A 231 LYS A 236 1 6 HELIX 3 AA3 ASN D 185 GLN D 191 1 7 HELIX 4 AA4 SER D 231 LYS D 236 1 6 SHEET 1 AA1 2 THR A 142 LYS A 146 0 SHEET 2 AA1 2 SER A 151 GLN A 155 -1 O VAL A 152 N LEU A 145 SHEET 1 AA2 5 GLN A 179 TYR A 183 0 SHEET 2 AA2 5 ARG A 170 LEU A 175 -1 N LEU A 171 O PHE A 182 SHEET 3 AA2 5 ILE A 159 SER A 164 -1 N PHE A 161 O HIS A 174 SHEET 4 AA2 5 PHE A 203 ASN A 206 -1 O VAL A 204 N PHE A 162 SHEET 5 AA2 5 PHE A 196 HIS A 200 -1 N PHE A 197 O VAL A 205 SHEET 1 AA3 3 ILE A 210 ASP A 214 0 SHEET 2 AA3 3 ILE A 219 PHE A 222 -1 O TYR A 221 N SER A 212 SHEET 3 AA3 3 HIS A 227 TYR A 229 -1 O CYS A 228 N VAL A 220 SHEET 1 AA4 2 THR D 142 LYS D 146 0 SHEET 2 AA4 2 SER D 151 GLN D 155 -1 O VAL D 152 N LEU D 145 SHEET 1 AA5 5 GLN D 179 TYR D 183 0 SHEET 2 AA5 5 ARG D 170 LEU D 175 -1 N LEU D 171 O PHE D 182 SHEET 3 AA5 5 ILE D 159 SER D 164 -1 N PHE D 161 O HIS D 174 SHEET 4 AA5 5 PHE D 203 ASN D 206 -1 O VAL D 204 N PHE D 162 SHEET 5 AA5 5 PHE D 196 HIS D 200 -1 N PHE D 197 O VAL D 205 SHEET 1 AA6 3 ILE D 210 ASP D 214 0 SHEET 2 AA6 3 ILE D 219 PHE D 222 -1 O TYR D 221 N SER D 212 SHEET 3 AA6 3 HIS D 227 TYR D 229 -1 O CYS D 228 N VAL D 220 CRYST1 96.760 96.760 51.110 90.00 90.00 90.00 P 42 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010335 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019566 0.00000