HEADER HYDROLASE 30-JAN-15 4XXT TITLE CRYSTAL STRUCTURE OF FUSED ZN-DEPENDENT TITLE 2 AMIDASE/PEPTIDASE/PEPTODOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN TITLE 3 FROM CLOSTRIDIUM ACETOBUTYLICUM ATCC 824 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSION OF PREDICTED ZN-DEPENDENT AMIDASE/PEPTIDASE (CELL COMPND 3 WALL HYDROLASE/DD-CARBOXYPEPTIDASE FAMILY) AND UNCHARACTERIZED DOMAIN COMPND 4 OF ERFK FAMILY PEPTODOGLYCAN-BINDING DOMAIN; COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM ACETOBUTYLICUM; SOURCE 3 ORGANISM_TAXID: 272562; SOURCE 4 STRAIN: ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787; SOURCE 5 GENE: CA_C1822; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS L, D-TRANSPEPTIDASES, STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,M.CUFF,G.JOACHIMIAK,M.ENDRES,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 1 18-FEB-15 4XXT 0 JRNL AUTH C.CHANG,M.CUFF,G.JOACHIMIAK,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL CRYSTAL STRUCTURE OF FUSED ZN-DEPENDENT JRNL TITL 2 AMIDASE/PEPTIDASE/PEPTODOGLYCAN-BINDING DOMAIN-CONTAINING JRNL TITL 3 PROTEIN FROM FROM CLOSTRIDIUM ACETOBUTYLICUM ATCC 824 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 25217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1748 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1707 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.156 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1879 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1732 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2560 ; 1.106 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3985 ; 0.716 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 5.378 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;35.089 ;25.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 287 ;10.627 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 277 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2236 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 462 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 942 ; 0.699 ; 1.214 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 940 ; 0.694 ; 1.212 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1192 ; 1.279 ; 1.796 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9489 40.6789 0.8981 REMARK 3 T TENSOR REMARK 3 T11: 0.1053 T22: 0.1045 REMARK 3 T33: 0.1825 T12: 0.0374 REMARK 3 T13: -0.0161 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 3.9212 L22: 8.5535 REMARK 3 L33: 2.6770 L12: -1.2191 REMARK 3 L13: 0.8090 L23: -2.9456 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: 0.0062 S13: 0.1382 REMARK 3 S21: -0.1195 S22: 0.0522 S23: 0.6164 REMARK 3 S31: -0.1234 S32: -0.1660 S33: -0.0028 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8521 31.8378 -0.5850 REMARK 3 T TENSOR REMARK 3 T11: 0.0391 T22: 0.0954 REMARK 3 T33: 0.1217 T12: 0.0329 REMARK 3 T13: -0.0063 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 8.6065 L22: 5.0412 REMARK 3 L33: 12.4734 L12: 1.0680 REMARK 3 L13: -6.1253 L23: 2.6023 REMARK 3 S TENSOR REMARK 3 S11: -0.2205 S12: 0.3398 S13: -0.0997 REMARK 3 S21: -0.1182 S22: 0.0853 S23: 0.2702 REMARK 3 S31: 0.2743 S32: -0.3145 S33: 0.1352 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3189 34.5838 3.8037 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.0683 REMARK 3 T33: 0.1328 T12: 0.0457 REMARK 3 T13: 0.0138 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.0117 L22: 1.7943 REMARK 3 L33: 2.8952 L12: -0.0780 REMARK 3 L13: 0.2486 L23: 0.5778 REMARK 3 S TENSOR REMARK 3 S11: -0.0519 S12: 0.0872 S13: -0.0343 REMARK 3 S21: 0.0810 S22: 0.0249 S23: 0.0897 REMARK 3 S31: -0.0951 S32: -0.1726 S33: 0.0270 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7913 45.6709 3.9267 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.0238 REMARK 3 T33: 0.1235 T12: 0.0624 REMARK 3 T13: -0.0021 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 3.1165 L22: 1.8404 REMARK 3 L33: 3.8473 L12: -0.2721 REMARK 3 L13: -0.5135 L23: 0.5218 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: 0.0717 S13: 0.1960 REMARK 3 S21: 0.0213 S22: -0.0082 S23: 0.0311 REMARK 3 S31: -0.5844 S32: -0.1529 S33: 0.0557 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0270 36.3087 10.3533 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.1327 REMARK 3 T33: 0.1554 T12: -0.0367 REMARK 3 T13: 0.0041 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 5.4347 L22: 2.5694 REMARK 3 L33: 6.2378 L12: -2.7200 REMARK 3 L13: 5.8000 L23: -2.6841 REMARK 3 S TENSOR REMARK 3 S11: -0.2468 S12: 0.2094 S13: 0.2967 REMARK 3 S21: 0.1259 S22: -0.0293 S23: -0.3137 REMARK 3 S31: -0.2918 S32: 0.2585 S33: 0.2760 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5248 29.1992 23.3499 REMARK 3 T TENSOR REMARK 3 T11: 0.0728 T22: 0.1166 REMARK 3 T33: 0.1057 T12: 0.0132 REMARK 3 T13: -0.0658 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 6.4815 L22: 10.7218 REMARK 3 L33: 3.5795 L12: 1.9015 REMARK 3 L13: 0.4275 L23: -1.5321 REMARK 3 S TENSOR REMARK 3 S11: -0.2376 S12: -0.2463 S13: 0.0360 REMARK 3 S21: 0.1926 S22: -0.0767 S23: -0.4372 REMARK 3 S31: 0.0109 S32: 0.2429 S33: 0.3143 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2425 28.1824 23.3563 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.0819 REMARK 3 T33: 0.1142 T12: 0.0755 REMARK 3 T13: -0.0065 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.9653 L22: 1.9648 REMARK 3 L33: 2.6174 L12: -0.7374 REMARK 3 L13: 0.3557 L23: -0.3482 REMARK 3 S TENSOR REMARK 3 S11: -0.1693 S12: -0.1193 S13: -0.0702 REMARK 3 S21: 0.2724 S22: 0.1641 S23: -0.0430 REMARK 3 S31: -0.1260 S32: 0.0616 S33: 0.0052 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4957 36.2135 23.6926 REMARK 3 T TENSOR REMARK 3 T11: 0.2469 T22: 0.1260 REMARK 3 T33: 0.1073 T12: 0.1556 REMARK 3 T13: 0.0299 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.1729 L22: 2.4749 REMARK 3 L33: 3.1513 L12: -1.1605 REMARK 3 L13: 1.0041 L23: -0.9718 REMARK 3 S TENSOR REMARK 3 S11: -0.3122 S12: -0.2359 S13: -0.0701 REMARK 3 S21: 0.3986 S22: 0.4120 S23: 0.1813 REMARK 3 S31: -0.3824 S32: -0.3880 S33: -0.0998 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5699 52.7215 29.9105 REMARK 3 T TENSOR REMARK 3 T11: 0.2456 T22: 0.0528 REMARK 3 T33: 0.1743 T12: 0.0842 REMARK 3 T13: -0.0754 T23: -0.0852 REMARK 3 L TENSOR REMARK 3 L11: 6.3101 L22: 5.5339 REMARK 3 L33: 19.7124 L12: -0.2352 REMARK 3 L13: -8.4773 L23: 7.0939 REMARK 3 S TENSOR REMARK 3 S11: 0.2362 S12: 0.0054 S13: 0.2164 REMARK 3 S21: -0.0445 S22: -0.0831 S23: 0.0730 REMARK 3 S31: -0.3807 S32: -0.1285 S33: -0.1531 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1433 43.3653 27.7871 REMARK 3 T TENSOR REMARK 3 T11: 0.3572 T22: 0.1074 REMARK 3 T33: 0.1073 T12: 0.1445 REMARK 3 T13: -0.0265 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 6.0969 L22: 4.0194 REMARK 3 L33: 1.7443 L12: 2.1421 REMARK 3 L13: 0.2951 L23: 0.8951 REMARK 3 S TENSOR REMARK 3 S11: -0.1789 S12: -0.2661 S13: 0.1276 REMARK 3 S21: 0.3719 S22: 0.2447 S23: 0.0730 REMARK 3 S31: -0.4745 S32: -0.1014 S33: -0.0658 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 244 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4034 47.7062 39.2253 REMARK 3 T TENSOR REMARK 3 T11: 0.3711 T22: 0.1485 REMARK 3 T33: 0.1686 T12: 0.0461 REMARK 3 T13: -0.0582 T23: -0.1133 REMARK 3 L TENSOR REMARK 3 L11: 1.3574 L22: 8.4736 REMARK 3 L33: 1.9144 L12: 3.3857 REMARK 3 L13: -1.5185 L23: -3.7319 REMARK 3 S TENSOR REMARK 3 S11: 0.2066 S12: -0.1662 S13: -0.0280 REMARK 3 S21: 0.4985 S22: -0.4091 S23: -0.0349 REMARK 3 S31: -0.3755 S32: 0.0843 S33: 0.2025 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 255 A 281 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9475 38.1102 23.8963 REMARK 3 T TENSOR REMARK 3 T11: 0.2873 T22: 0.0713 REMARK 3 T33: 0.1141 T12: 0.1034 REMARK 3 T13: -0.0291 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 1.6078 L22: 1.9208 REMARK 3 L33: 2.9814 L12: -0.6420 REMARK 3 L13: 0.5748 L23: -0.4449 REMARK 3 S TENSOR REMARK 3 S11: -0.3083 S12: -0.1120 S13: 0.0764 REMARK 3 S21: 0.3972 S22: 0.3109 S23: -0.0507 REMARK 3 S31: -0.5220 S32: -0.0319 S33: -0.0025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4XXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26936 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 0.1M TRIS-HCL, REMARK 280 20% PEG3000, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.85033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.70067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 83.70067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.85033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 482 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 485 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 21 REMARK 465 ASN A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 GLN A 25 REMARK 465 ASP A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 LYS A 29 REMARK 465 ASN A 30 REMARK 465 GLN A 31 REMARK 465 VAL A 32 REMARK 465 LYS A 33 REMARK 465 SER A 34 REMARK 465 LYS A 35 REMARK 465 ASN A 36 REMARK 465 LEU A 37 REMARK 465 THR A 38 REMARK 465 SER A 39 REMARK 465 SER A 40 REMARK 465 THR A 41 REMARK 465 LYS A 42 REMARK 465 LYS A 43 REMARK 465 LYS A 44 REMARK 465 VAL A 45 REMARK 465 LYS A 46 REMARK 465 LYS A 47 REMARK 465 ALA A 48 REMARK 465 LYS A 49 REMARK 465 GLU A 50 REMARK 465 PRO A 51 REMARK 465 PRO A 52 REMARK 465 LYS A 214 REMARK 465 THR A 215 REMARK 465 SER A 216 REMARK 465 ASN A 217 REMARK 465 ASP A 239 REMARK 465 LYS A 240 REMARK 465 ASN A 241 REMARK 465 GLY A 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 PHE A 213 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 ASN A 243 CG OD1 ND2 REMARK 470 THR A 248 OG1 CG2 REMARK 470 LEU A 249 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 181 O HOH A 401 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 110 -157.98 -123.31 REMARK 500 SER A 110 -160.00 -124.30 REMARK 500 ASN A 181 56.39 -140.84 REMARK 500 ASN A 181 58.16 -140.24 REMARK 500 ASP A 246 -161.41 -128.35 REMARK 500 HIS A 255 -126.30 50.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC110377 RELATED DB: TARGETTRACK DBREF 4XXT A 24 281 UNP Q97I32 Q97I32_CLOAB 24 281 SEQADV 4XXT SER A 21 UNP Q97I32 EXPRESSION TAG SEQADV 4XXT ASN A 22 UNP Q97I32 EXPRESSION TAG SEQADV 4XXT ALA A 23 UNP Q97I32 EXPRESSION TAG SEQRES 1 A 261 SER ASN ALA LEU GLN ASP LYS SER LYS ASN GLN VAL LYS SEQRES 2 A 261 SER LYS ASN LEU THR SER SER THR LYS LYS LYS VAL LYS SEQRES 3 A 261 LYS ALA LYS GLU PRO PRO LYS PRO LYS VAL PHE LYS LEU SEQRES 4 A 261 GLY SER SER GLY SER ASP VAL LYS SER ILE GLN ASP LYS SEQRES 5 A 261 LEU ASN ASN TYR GLY TYR ALA ILE THR ALA ASP GLY LYS SEQRES 6 A 261 PHE GLY PRO SER THR ASP TRP ALA VAL ARG ASP PHE GLN SEQRES 7 A 261 TYR LYS HIS ASN ILE ALA MSE ASP GLY SER VAL SER ASP SEQRES 8 A 261 GLN THR MSE ASN LEU LEU ASN GLN THR PRO THR ASP ALA SEQRES 9 A 261 THR ARG VAL ASN SER VAL ILE GLN PRO ASP PRO ASN PRO SEQRES 10 A 261 ASP VAL GLN SER LEU LYS ALA ALA ALA GLU ASN LEU ALA SEQRES 11 A 261 ASN SER ASN ASP THR PRO THR TYR THR LYS PHE PHE ILE SEQRES 12 A 261 ILE THR SER LEU LYS GLU GLN ARG VAL TYR VAL PHE ASN SEQRES 13 A 261 GLY ASP PRO HIS ASN TRP LYS LEU ILE ASN THR PHE GLN SEQRES 14 A 261 CYS THR SER GLY ALA SER ASP THR PRO THR ILE THR GLY SEQRES 15 A 261 ARG PHE TYR VAL GLN GLY LYS GLY LEU ALA PHE LYS THR SEQRES 16 A 261 SER ASN ASP VAL ILE CYS LYS TYR TYR THR GLN ILE GLN SEQRES 17 A 261 GLY ASN TYR LEU PHE HIS SER ILE LEU PHE ASP LYS ASN SEQRES 18 A 261 GLY ASN VAL VAL ASP GLY THR LEU GLY ALA SER LEU SER SEQRES 19 A 261 HIS GLY CYS ILE ARG LEU ALA VAL GLN ASN ALA LYS TYR SEQRES 20 A 261 ILE TYR ASP THR LEU PRO MSE GLY THR GLY ILE TRP ILE SEQRES 21 A 261 TYR MODRES 4XXT MSE A 105 MET MODIFIED RESIDUE MODRES 4XXT MSE A 114 MET MODIFIED RESIDUE MODRES 4XXT MSE A 274 MET MODIFIED RESIDUE HET MSE A 105 8 HET MSE A 114 8 HET MSE A 274 8 HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET ACT A 304 4 HET IMD A 305 5 HET IMD A 306 5 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM IMD IMIDAZOLE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 IMD 2(C3 H5 N2 1+) FORMUL 8 HOH *223(H2 O) HELIX 1 AA1 GLY A 63 TYR A 76 1 14 HELIX 2 AA2 GLY A 87 HIS A 101 1 15 HELIX 3 AA3 SER A 110 ASN A 118 1 9 HELIX 4 AA4 ASN A 136 SER A 152 1 17 HELIX 5 AA5 ASP A 246 HIS A 255 1 10 HELIX 6 AA6 ALA A 261 LEU A 272 1 12 SHEET 1 AA1 5 ASN A 181 GLN A 189 0 SHEET 2 AA1 5 ARG A 171 ASP A 178 -1 N VAL A 174 O ASN A 186 SHEET 3 AA1 5 PHE A 161 SER A 166 -1 N PHE A 162 O PHE A 175 SHEET 4 AA1 5 GLY A 277 ILE A 280 1 O TRP A 279 N THR A 165 SHEET 5 AA1 5 GLY A 202 TYR A 205 -1 N GLY A 202 O ILE A 280 SHEET 1 AA2 4 GLY A 208 PHE A 213 0 SHEET 2 AA2 4 CYS A 221 GLN A 228 -1 O GLN A 226 N GLY A 208 SHEET 3 AA2 4 TYR A 231 SER A 235 -1 O TYR A 231 N GLN A 228 SHEET 4 AA2 4 ILE A 258 LEU A 260 1 O ILE A 258 N LEU A 232 LINK C ALA A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N ASP A 106 1555 1555 1.33 LINK C THR A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N AASN A 115 1555 1555 1.33 LINK C MSE A 114 N BASN A 115 1555 1555 1.33 LINK C PRO A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N GLY A 275 1555 1555 1.33 SITE 1 AC1 3 GLU A 169 TYR A 173 HOH A 419 SITE 1 AC2 5 ASN A 102 ARG A 203 TRP A 279 HOH A 425 SITE 2 AC2 5 HOH A 456 SITE 1 AC3 6 SER A 68 ASP A 71 ASN A 176 LYS A 183 SITE 2 AC3 6 HOH A 438 HOH A 454 SITE 1 AC4 9 ASP A 96 LYS A 100 VAL A 127 LYS A 209 SITE 2 AC4 9 TYR A 269 ASP A 270 LEU A 272 HOH A 509 SITE 3 AC4 9 HOH A 537 SITE 1 AC5 4 CYS A 190 THR A 191 ILE A 236 ARG A 259 SITE 1 AC6 4 PRO A 121 THR A 122 ASP A 123 ARG A 126 CRYST1 60.790 60.790 125.551 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016450 0.009497 0.000000 0.00000 SCALE2 0.000000 0.018995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007965 0.00000