HEADER HYDROLASE/HYDROLASE INHIBITOR 02-FEB-15 4XY2 TITLE CRYSTAL STRUCTURE OF PDE10A IN COMPLEX WITH ASP9436 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP AND CAMP-INHIBITED CGMP 3',5'-CYCLIC PHOSPHODIESTERASE COMPND 3 10A; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 439-779; COMPND 6 EC: 3.1.4.17,3.1.4.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE10A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHODIESTERASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.AMANO,K.HONBOU REVDAT 4 20-MAR-24 4XY2 1 LINK REVDAT 3 05-FEB-20 4XY2 1 SOURCE JRNL REMARK REVDAT 2 24-JUN-15 4XY2 1 JRNL REVDAT 1 17-JUN-15 4XY2 0 JRNL AUTH W.HAMAGUCHI,N.MASUDA,S.MIYAMOTO,S.KIKUCHI,F.NARAZAKI, JRNL AUTH 2 Y.SHIINA,R.SEO,Y.AMANO,T.MIHARA,H.MORIGUCHI,K.HATTORI JRNL TITL ADDRESSING PHOTOTOXICITY OBSERVED IN A NOVEL SERIES OF JRNL TITL 2 BIARYL DERIVATIVES: DISCOVERY OF POTENT, SELECTIVE AND JRNL TITL 3 ORALLY ACTIVE PHOSPHODIESTERASE 10A INHIBITOR ASP9436 JRNL REF BIOORG.MED.CHEM. V. 23 3351 2015 JRNL REFN ESSN 1464-3391 JRNL PMID 25960322 JRNL DOI 10.1016/J.BMC.2015.04.052 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 36797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1958 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2435 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5140 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.263 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.896 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5299 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7171 ; 1.757 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 630 ; 6.345 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;38.859 ;24.137 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 942 ;18.716 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 783 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4031 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2532 ; 3.157 ; 3.554 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3158 ; 4.275 ; 5.302 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2767 ; 3.999 ; 3.858 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8388 ; 7.755 ;30.094 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 79.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS PROPANE, MAGNESIUM SULFATE, REMARK 280 PEG3350, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.22350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.57500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.05700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.57500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.22350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.05700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 445 REMARK 465 SER A 446 REMARK 465 LEU A 575 REMARK 465 GLN A 576 REMARK 465 LYS A 577 REMARK 465 PHE A 578 REMARK 465 ASP A 579 REMARK 465 HIS A 580 REMARK 465 PRO A 581 REMARK 465 LEU A 582 REMARK 465 ALA A 583 REMARK 465 ALA A 584 REMARK 465 LEU A 585 REMARK 465 TYR A 586 REMARK 465 THR A 771 REMARK 465 ALA A 772 REMARK 465 THR A 773 REMARK 465 TRP A 774 REMARK 465 ILE A 775 REMARK 465 SER A 776 REMARK 465 SER A 777 REMARK 465 PRO A 778 REMARK 465 SER A 779 REMARK 465 VAL A 780 REMARK 465 ALA A 781 REMARK 465 GLN A 782 REMARK 465 LYS A 783 REMARK 465 ALA A 784 REMARK 465 ALA A 785 REMARK 465 ALA A 786 REMARK 465 SER A 787 REMARK 465 GLU A 788 REMARK 465 ASP A 789 REMARK 465 GLY B 445 REMARK 465 SER B 446 REMARK 465 ASP B 579 REMARK 465 HIS B 580 REMARK 465 THR B 771 REMARK 465 ALA B 772 REMARK 465 THR B 773 REMARK 465 TRP B 774 REMARK 465 ILE B 775 REMARK 465 SER B 776 REMARK 465 SER B 777 REMARK 465 PRO B 778 REMARK 465 SER B 779 REMARK 465 VAL B 780 REMARK 465 ALA B 781 REMARK 465 GLN B 782 REMARK 465 LYS B 783 REMARK 465 ALA B 784 REMARK 465 ALA B 785 REMARK 465 ALA B 786 REMARK 465 SER B 787 REMARK 465 GLU B 788 REMARK 465 ASP B 789 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 922 O HOH A 925 1.55 REMARK 500 O HOH A 922 O HOH A 924 1.78 REMARK 500 O HOH B 917 O HOH B 919 1.98 REMARK 500 O HOH A 924 O HOH A 925 1.99 REMARK 500 O HOH B 917 O HOH B 924 2.05 REMARK 500 O HOH A 921 O HOH A 922 2.06 REMARK 500 O HOH A 921 O HOH A 925 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 448 92.81 78.95 REMARK 500 CYS A 498 15.93 -166.13 REMARK 500 ASN A 526 -165.35 -127.82 REMARK 500 THR A 588 -143.43 -124.45 REMARK 500 SER A 589 58.86 26.15 REMARK 500 GLU A 606 -110.58 13.21 REMARK 500 THR A 613 3.44 -63.19 REMARK 500 GLN A 650 -70.51 -47.12 REMARK 500 ASN B 526 -169.85 -128.00 REMARK 500 ASN B 544 33.20 -150.04 REMARK 500 SER B 612 -56.80 -14.82 REMARK 500 PRO B 747 3.41 -69.78 REMARK 500 ARG B 767 29.39 -76.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 944 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH A1005 DISTANCE = 9.38 ANGSTROMS REMARK 525 HOH B 997 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 529 NE2 REMARK 620 2 HIS A 563 NE2 87.4 REMARK 620 3 ASP A 564 OD2 85.1 90.1 REMARK 620 4 ASP A 674 OD1 88.2 88.6 173.2 REMARK 620 5 HOH A 922 O 106.2 166.3 89.2 93.7 REMARK 620 6 HOH A 928 O 168.5 98.6 85.1 101.7 67.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 564 OD1 REMARK 620 2 HOH A 923 O 166.6 REMARK 620 3 HOH A 924 O 100.6 90.8 REMARK 620 4 HOH A 926 O 86.0 84.7 101.5 REMARK 620 5 HOH A 928 O 84.9 106.0 69.4 165.7 REMARK 620 6 HOH A 960 O 87.3 83.9 162.2 94.9 95.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 529 NE2 REMARK 620 2 HIS B 563 NE2 99.3 REMARK 620 3 ASP B 564 OD2 85.9 87.6 REMARK 620 4 ASP B 674 OD1 88.1 90.3 173.3 REMARK 620 5 HOH B 923 O 173.7 87.0 94.1 92.1 REMARK 620 6 HOH B 924 O 91.7 168.6 96.0 87.3 82.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 564 OD1 REMARK 620 2 HOH B 918 O 99.5 REMARK 620 3 HOH B 920 O 171.8 84.4 REMARK 620 4 HOH B 921 O 84.7 171.7 90.5 REMARK 620 5 HOH B 922 O 89.1 84.8 84.0 88.2 REMARK 620 6 HOH B 923 O 88.4 89.7 98.9 97.6 173.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 490 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 802 DBREF 4XY2 A 449 789 UNP Q9Y233 PDE10_HUMAN 439 779 DBREF 4XY2 B 449 789 UNP Q9Y233 PDE10_HUMAN 439 779 SEQADV 4XY2 GLY A 445 UNP Q9Y233 EXPRESSION TAG SEQADV 4XY2 SER A 446 UNP Q9Y233 EXPRESSION TAG SEQADV 4XY2 HIS A 447 UNP Q9Y233 EXPRESSION TAG SEQADV 4XY2 MET A 448 UNP Q9Y233 EXPRESSION TAG SEQADV 4XY2 GLY B 445 UNP Q9Y233 EXPRESSION TAG SEQADV 4XY2 SER B 446 UNP Q9Y233 EXPRESSION TAG SEQADV 4XY2 HIS B 447 UNP Q9Y233 EXPRESSION TAG SEQADV 4XY2 MET B 448 UNP Q9Y233 EXPRESSION TAG SEQRES 1 A 345 GLY SER HIS MET SER ILE CYS THR SER GLU GLU TRP GLN SEQRES 2 A 345 GLY LEU MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS SEQRES 3 A 345 GLU ILE GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU SEQRES 4 A 345 ASN MET TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SEQRES 5 A 345 SER CYS GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS SEQRES 6 A 345 ARG PHE ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL SEQRES 7 A 345 PRO TYR HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS SEQRES 8 A 345 CYS MET TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE SEQRES 9 A 345 THR ASP LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU SEQRES 10 A 345 CYS HIS ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR SEQRES 11 A 345 LEU GLN LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER SEQRES 12 A 345 THR SER THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SEQRES 13 A 345 SER ILE LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR SEQRES 14 A 345 LEU SER SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE SEQRES 15 A 345 ARG LYS ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE SEQRES 16 A 345 GLY ASN ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SEQRES 17 A 345 SER LEU ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL SEQRES 18 A 345 ILE GLY LEU MET MET THR ALA CYS ASP LEU CYS SER VAL SEQRES 19 A 345 THR LYS LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP SEQRES 20 A 345 ILE TYR ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS SEQRES 21 A 345 LYS LEU GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP SEQRES 22 A 345 LYS LYS ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR SEQRES 23 A 345 ASN ALA VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN SEQRES 24 A 345 ILE LEU PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG SEQRES 25 A 345 ASP ASN LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU SEQRES 26 A 345 GLU THR ALA THR TRP ILE SER SER PRO SER VAL ALA GLN SEQRES 27 A 345 LYS ALA ALA ALA SER GLU ASP SEQRES 1 B 345 GLY SER HIS MET SER ILE CYS THR SER GLU GLU TRP GLN SEQRES 2 B 345 GLY LEU MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS SEQRES 3 B 345 GLU ILE GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU SEQRES 4 B 345 ASN MET TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SEQRES 5 B 345 SER CYS GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS SEQRES 6 B 345 ARG PHE ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL SEQRES 7 B 345 PRO TYR HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS SEQRES 8 B 345 CYS MET TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE SEQRES 9 B 345 THR ASP LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU SEQRES 10 B 345 CYS HIS ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR SEQRES 11 B 345 LEU GLN LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER SEQRES 12 B 345 THR SER THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SEQRES 13 B 345 SER ILE LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR SEQRES 14 B 345 LEU SER SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE SEQRES 15 B 345 ARG LYS ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE SEQRES 16 B 345 GLY ASN ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SEQRES 17 B 345 SER LEU ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL SEQRES 18 B 345 ILE GLY LEU MET MET THR ALA CYS ASP LEU CYS SER VAL SEQRES 19 B 345 THR LYS LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP SEQRES 20 B 345 ILE TYR ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS SEQRES 21 B 345 LYS LEU GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP SEQRES 22 B 345 LYS LYS ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR SEQRES 23 B 345 ASN ALA VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN SEQRES 24 B 345 ILE LEU PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG SEQRES 25 B 345 ASP ASN LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU SEQRES 26 B 345 GLU THR ALA THR TRP ILE SER SER PRO SER VAL ALA GLN SEQRES 27 B 345 LYS ALA ALA ALA SER GLU ASP HET ZN A 801 1 HET MG A 802 1 HET 490 A 803 32 HET ZN B 801 1 HET MG B 802 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM 490 1-METHYL-5-(1-METHYL-3-{[4-(1-METHYL-1H-BENZIMIDAZOL-4- HETNAM 2 490 YL)PHENOXY]METHYL}-1H-PYRAZOL-4-YL)PYRIDIN-2(1H)-ONE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 490 C25 H23 N5 O2 FORMUL 8 HOH *228(H2 O) HELIX 1 AA1 THR A 452 GLN A 461 1 10 HELIX 2 AA2 PRO A 465 CYS A 469 5 5 HELIX 3 AA3 LYS A 470 LEU A 474 5 5 HELIX 4 AA4 PHE A 482 ASN A 484 5 3 HELIX 5 AA5 MET A 485 SER A 497 1 13 HELIX 6 AA6 CYS A 498 CYS A 502 5 5 HELIX 7 AA7 GLU A 504 ASN A 518 1 15 HELIX 8 AA8 ASN A 526 ASN A 543 1 18 HELIX 9 AA9 THR A 549 CYS A 562 1 14 HELIX 10 AB1 SER A 589 LEU A 605 1 17 HELIX 11 AB2 SER A 615 THR A 633 1 19 HELIX 12 AB3 ASP A 634 THR A 651 1 18 HELIX 13 AB4 ASN A 658 LEU A 675 1 18 HELIX 14 AB5 CYS A 676 LYS A 680 5 5 HELIX 15 AB6 LEU A 681 LYS A 705 1 25 HELIX 16 AB7 ILE A 711 ASP A 720 5 10 HELIX 17 AB8 GLU A 721 VAL A 733 1 13 HELIX 18 AB9 VAL A 733 LEU A 745 1 13 HELIX 19 AC1 THR A 748 GLY A 768 1 21 HELIX 20 AC2 THR B 452 PHE B 462 1 11 HELIX 21 AC3 PRO B 465 GLU B 473 1 9 HELIX 22 AC4 ILE B 479 ASN B 484 5 6 HELIX 23 AC5 MET B 485 GLY B 499 1 15 HELIX 24 AC6 GLU B 504 ASN B 518 1 15 HELIX 25 AC7 ASN B 526 ASN B 543 1 18 HELIX 26 AC8 ASN B 544 PHE B 548 5 5 HELIX 27 AC9 THR B 549 HIS B 563 1 15 HELIX 28 AD1 SER B 571 PHE B 578 1 8 HELIX 29 AD2 LEU B 582 TYR B 586 1 5 HELIX 30 AD3 SER B 589 GLN B 604 1 16 HELIX 31 AD4 SER B 615 ALA B 632 1 18 HELIX 32 AD5 ASP B 634 THR B 651 1 18 HELIX 33 AD6 ASN B 658 LEU B 675 1 18 HELIX 34 AD7 CYS B 676 LYS B 680 5 5 HELIX 35 AD8 LEU B 681 LEU B 706 1 26 HELIX 36 AD9 ILE B 711 ASP B 720 5 10 HELIX 37 AE1 GLU B 721 VAL B 733 1 13 HELIX 38 AE2 VAL B 733 LEU B 745 1 13 HELIX 39 AE3 THR B 748 ARG B 767 1 20 LINK NE2 HIS A 529 ZN ZN A 801 1555 1555 2.19 LINK NE2 HIS A 563 ZN ZN A 801 1555 1555 2.15 LINK OD2 ASP A 564 ZN ZN A 801 1555 1555 2.31 LINK OD1 ASP A 564 MG MG A 802 1555 1555 2.29 LINK OD1 ASP A 674 ZN ZN A 801 1555 1555 2.20 LINK ZN ZN A 801 O HOH A 922 1555 1555 2.54 LINK ZN ZN A 801 O HOH A 928 1555 1555 1.82 LINK MG MG A 802 O HOH A 923 1555 1555 2.04 LINK MG MG A 802 O HOH A 924 1555 1555 2.35 LINK MG MG A 802 O HOH A 926 1555 1555 2.24 LINK MG MG A 802 O HOH A 928 1555 1555 2.09 LINK MG MG A 802 O HOH A 960 1555 1555 2.30 LINK NE2 HIS B 529 ZN ZN B 801 1555 1555 2.10 LINK NE2 HIS B 563 ZN ZN B 801 1555 1555 2.17 LINK OD2 ASP B 564 ZN ZN B 801 1555 1555 2.19 LINK OD1 ASP B 564 MG MG B 802 1555 1555 1.98 LINK OD1 ASP B 674 ZN ZN B 801 1555 1555 2.20 LINK ZN ZN B 801 O HOH B 923 1555 1555 1.89 LINK ZN ZN B 801 O HOH B 924 1555 1555 2.31 LINK MG MG B 802 O HOH B 918 1555 1555 2.35 LINK MG MG B 802 O HOH B 920 1555 1555 2.13 LINK MG MG B 802 O HOH B 921 1555 1555 2.20 LINK MG MG B 802 O HOH B 922 1555 1555 1.95 LINK MG MG B 802 O HOH B 923 1555 1555 2.16 SITE 1 AC1 6 HIS A 529 HIS A 563 ASP A 564 ASP A 674 SITE 2 AC1 6 HOH A 922 HOH A 928 SITE 1 AC2 6 ASP A 564 HOH A 923 HOH A 924 HOH A 926 SITE 2 AC2 6 HOH A 928 HOH A 960 SITE 1 AC3 11 TYR A 524 LEU A 635 SER A 677 ILE A 692 SITE 2 AC3 11 TYR A 693 PHE A 696 PRO A 712 MET A 713 SITE 3 AC3 11 GLY A 725 GLN A 726 PHE A 729 SITE 1 AC4 7 HIS B 529 HIS B 563 ASP B 564 ASP B 674 SITE 2 AC4 7 MG B 802 HOH B 923 HOH B 924 SITE 1 AC5 7 ASP B 564 ZN B 801 HOH B 918 HOH B 920 SITE 2 AC5 7 HOH B 921 HOH B 922 HOH B 923 CRYST1 50.447 82.114 159.150 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019823 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006283 0.00000