data_4XYQ # _entry.id 4XYQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4XYQ pdb_00004xyq 10.2210/pdb4xyq/pdb WWPDB D_1000206531 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-04-06 2 'Structure model' 1 1 2019-12-18 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 7 3 'Structure model' '_database_2.pdbx_DOI' 8 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4XYQ _pdbx_database_status.recvd_initial_deposition_date 2015-02-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 4XYO _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gopal, B.' 1 'Rajasree, K.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Biochem Biophys Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2405-5808 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 124 _citation.page_last 134 _citation.title 'Conformational features of theStaphylococcus aureusAgrA-promoter interactions rationalize quorum-sensing triggered gene expression.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bbrep.2016.03.012 _citation.pdbx_database_id_PubMed 28955870 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rajasree, K.' 1 ? primary 'Fasim, A.' 2 ? primary 'Gopal, B.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*TP*AP*AP*CP*AP*GP*TP*TP*AP*AP*GP*TP*AP*T)-3') ; 4911.227 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*AP*TP*AP*CP*TP*TP*AP*AP*CP*TP*GP*TP*TP*AP*A)-3') ; 4880.216 1 ? ? ? ? 3 polymer man 'Accessory gene regulator A' 12357.919 1 ? ? 'LytTR domain (UNP RESIDUES 137-238)' ? 4 non-polymer nat 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 water nat water 18.015 22 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DT)(DT)(DA)(DA)(DC)(DA)(DG)(DT)(DT)(DA)(DA)(DG)(DT)(DA)(DT)' TTTAACAGTTAAGTAT B ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DT)(DA)(DC)(DT)(DT)(DA)(DA)(DC)(DT)(DG)(DT)(DT)(DA)(DA)' AATACTTAACTGTTAA C ? 3 'polypeptide(L)' no no ;MDNSVETIELKRGSNSVYVQYDDIMFFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDS KERIVYFKNKEHCYASVRNVKKI ; ;MDNSVETIELKRGSNSVYVQYDDIMFFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDS KERIVYFKNKEHCYASVRNVKKI ; A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DT n 1 4 DA n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DG n 1 9 DT n 1 10 DT n 1 11 DA n 1 12 DA n 1 13 DG n 1 14 DT n 1 15 DA n 1 16 DT n 2 1 DA n 2 2 DA n 2 3 DT n 2 4 DA n 2 5 DC n 2 6 DT n 2 7 DT n 2 8 DA n 2 9 DA n 2 10 DC n 2 11 DT n 2 12 DG n 2 13 DT n 2 14 DT n 2 15 DA n 2 16 DA n 3 1 MET n 3 2 ASP n 3 3 ASN n 3 4 SER n 3 5 VAL n 3 6 GLU n 3 7 THR n 3 8 ILE n 3 9 GLU n 3 10 LEU n 3 11 LYS n 3 12 ARG n 3 13 GLY n 3 14 SER n 3 15 ASN n 3 16 SER n 3 17 VAL n 3 18 TYR n 3 19 VAL n 3 20 GLN n 3 21 TYR n 3 22 ASP n 3 23 ASP n 3 24 ILE n 3 25 MET n 3 26 PHE n 3 27 PHE n 3 28 GLU n 3 29 SER n 3 30 SER n 3 31 THR n 3 32 LYS n 3 33 SER n 3 34 HIS n 3 35 ARG n 3 36 LEU n 3 37 ILE n 3 38 ALA n 3 39 HIS n 3 40 LEU n 3 41 ASP n 3 42 ASN n 3 43 ARG n 3 44 GLN n 3 45 ILE n 3 46 GLU n 3 47 PHE n 3 48 TYR n 3 49 GLY n 3 50 ASN n 3 51 LEU n 3 52 LYS n 3 53 GLU n 3 54 LEU n 3 55 SER n 3 56 GLN n 3 57 LEU n 3 58 ASP n 3 59 ASP n 3 60 ARG n 3 61 PHE n 3 62 PHE n 3 63 ARG n 3 64 CYS n 3 65 HIS n 3 66 ASN n 3 67 SER n 3 68 PHE n 3 69 VAL n 3 70 VAL n 3 71 ASN n 3 72 ARG n 3 73 HIS n 3 74 ASN n 3 75 ILE n 3 76 GLU n 3 77 SER n 3 78 ILE n 3 79 ASP n 3 80 SER n 3 81 LYS n 3 82 GLU n 3 83 ARG n 3 84 ILE n 3 85 VAL n 3 86 TYR n 3 87 PHE n 3 88 LYS n 3 89 ASN n 3 90 LYS n 3 91 GLU n 3 92 HIS n 3 93 CYS n 3 94 TYR n 3 95 ALA n 3 96 SER n 3 97 VAL n 3 98 ARG n 3 99 ASN n 3 100 VAL n 3 101 LYS n 3 102 LYS n 3 103 ILE n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 103 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'agrA, SACOL2026' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain COL _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus (strain COL)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 93062 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain RosettapLysS _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 16 'synthetic construct' ? 32630 ? 2 1 sample 1 16 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT B . n A 1 2 DT 2 2 2 DT DT B . n A 1 3 DT 3 3 3 DT DT B . n A 1 4 DA 4 4 4 DA DA B . n A 1 5 DA 5 5 5 DA DA B . n A 1 6 DC 6 6 6 DC DC B . n A 1 7 DA 7 7 7 DA DA B . n A 1 8 DG 8 8 8 DG DG B . n A 1 9 DT 9 9 9 DT DT B . n A 1 10 DT 10 10 10 DT DT B . n A 1 11 DA 11 11 11 DA DA B . n A 1 12 DA 12 12 12 DA DA B . n A 1 13 DG 13 13 13 DG DG B . n A 1 14 DT 14 14 14 DT DT B . n A 1 15 DA 15 15 15 DA DA B . n A 1 16 DT 16 16 16 DT DT B . n B 2 1 DA 1 1 1 DA DA C . n B 2 2 DA 2 2 2 DA DA C . n B 2 3 DT 3 3 3 DT DT C . n B 2 4 DA 4 4 4 DA DA C . n B 2 5 DC 5 5 5 DC DC C . n B 2 6 DT 6 6 6 DT DT C . n B 2 7 DT 7 7 7 DT DT C . n B 2 8 DA 8 8 8 DA DA C . n B 2 9 DA 9 9 9 DA DA C . n B 2 10 DC 10 10 10 DC DC C . n B 2 11 DT 11 11 11 DT DT C . n B 2 12 DG 12 12 12 DG DG C . n B 2 13 DT 13 13 13 DT DT C . n B 2 14 DT 14 14 14 DT DT C . n B 2 15 DA 15 15 15 DA DA C . n B 2 16 DA 16 16 16 DA DA C . n C 3 1 MET 1 136 136 MET MET A . n C 3 2 ASP 2 137 137 ASP ASP A . n C 3 3 ASN 3 138 138 ASN ASN A . n C 3 4 SER 4 139 139 SER SER A . n C 3 5 VAL 5 140 140 VAL VAL A . n C 3 6 GLU 6 141 141 GLU GLU A . n C 3 7 THR 7 142 142 THR THR A . n C 3 8 ILE 8 143 143 ILE ILE A . n C 3 9 GLU 9 144 144 GLU GLU A . n C 3 10 LEU 10 145 145 LEU LEU A . n C 3 11 LYS 11 146 146 LYS LYS A . n C 3 12 ARG 12 147 147 ARG ARG A . n C 3 13 GLY 13 148 148 GLY GLY A . n C 3 14 SER 14 149 149 SER SER A . n C 3 15 ASN 15 150 150 ASN ASN A . n C 3 16 SER 16 151 151 SER SER A . n C 3 17 VAL 17 152 152 VAL VAL A . n C 3 18 TYR 18 153 153 TYR TYR A . n C 3 19 VAL 19 154 154 VAL VAL A . n C 3 20 GLN 20 155 155 GLN GLN A . n C 3 21 TYR 21 156 156 TYR TYR A . n C 3 22 ASP 22 157 157 ASP ASP A . n C 3 23 ASP 23 158 158 ASP ASP A . n C 3 24 ILE 24 159 159 ILE ILE A . n C 3 25 MET 25 160 160 MET MET A . n C 3 26 PHE 26 161 161 PHE PHE A . n C 3 27 PHE 27 162 162 PHE PHE A . n C 3 28 GLU 28 163 163 GLU GLU A . n C 3 29 SER 29 164 164 SER SER A . n C 3 30 SER 30 165 165 SER SER A . n C 3 31 THR 31 166 166 THR THR A . n C 3 32 LYS 32 167 167 LYS LYS A . n C 3 33 SER 33 168 168 SER SER A . n C 3 34 HIS 34 169 169 HIS HIS A . n C 3 35 ARG 35 170 170 ARG ARG A . n C 3 36 LEU 36 171 171 LEU LEU A . n C 3 37 ILE 37 172 172 ILE ILE A . n C 3 38 ALA 38 173 173 ALA ALA A . n C 3 39 HIS 39 174 174 HIS HIS A . n C 3 40 LEU 40 175 175 LEU LEU A . n C 3 41 ASP 41 176 176 ASP ASP A . n C 3 42 ASN 42 177 177 ASN ASN A . n C 3 43 ARG 43 178 178 ARG ARG A . n C 3 44 GLN 44 179 179 GLN GLN A . n C 3 45 ILE 45 180 180 ILE ILE A . n C 3 46 GLU 46 181 181 GLU GLU A . n C 3 47 PHE 47 182 182 PHE PHE A . n C 3 48 TYR 48 183 183 TYR TYR A . n C 3 49 GLY 49 184 184 GLY GLY A . n C 3 50 ASN 50 185 185 ASN ASN A . n C 3 51 LEU 51 186 186 LEU LEU A . n C 3 52 LYS 52 187 187 LYS LYS A . n C 3 53 GLU 53 188 188 GLU GLU A . n C 3 54 LEU 54 189 189 LEU LEU A . n C 3 55 SER 55 190 190 SER SER A . n C 3 56 GLN 56 191 191 GLN GLN A . n C 3 57 LEU 57 192 192 LEU LEU A . n C 3 58 ASP 58 193 193 ASP ASP A . n C 3 59 ASP 59 194 194 ASP ASP A . n C 3 60 ARG 60 195 195 ARG ARG A . n C 3 61 PHE 61 196 196 PHE PHE A . n C 3 62 PHE 62 197 197 PHE PHE A . n C 3 63 ARG 63 198 198 ARG ARG A . n C 3 64 CYS 64 199 199 CYS CYS A . n C 3 65 HIS 65 200 200 HIS HIS A . n C 3 66 ASN 66 201 201 ASN ASN A . n C 3 67 SER 67 202 202 SER SER A . n C 3 68 PHE 68 203 203 PHE PHE A . n C 3 69 VAL 69 204 204 VAL VAL A . n C 3 70 VAL 70 205 205 VAL VAL A . n C 3 71 ASN 71 206 206 ASN ASN A . n C 3 72 ARG 72 207 207 ARG ARG A . n C 3 73 HIS 73 208 208 HIS HIS A . n C 3 74 ASN 74 209 209 ASN ASN A . n C 3 75 ILE 75 210 210 ILE ILE A . n C 3 76 GLU 76 211 211 GLU GLU A . n C 3 77 SER 77 212 212 SER SER A . n C 3 78 ILE 78 213 213 ILE ILE A . n C 3 79 ASP 79 214 214 ASP ASP A . n C 3 80 SER 80 215 215 SER SER A . n C 3 81 LYS 81 216 216 LYS LYS A . n C 3 82 GLU 82 217 217 GLU GLU A . n C 3 83 ARG 83 218 218 ARG ARG A . n C 3 84 ILE 84 219 219 ILE ILE A . n C 3 85 VAL 85 220 220 VAL VAL A . n C 3 86 TYR 86 221 221 TYR TYR A . n C 3 87 PHE 87 222 222 PHE PHE A . n C 3 88 LYS 88 223 223 LYS LYS A . n C 3 89 ASN 89 224 224 ASN ASN A . n C 3 90 LYS 90 225 225 LYS LYS A . n C 3 91 GLU 91 226 226 GLU GLU A . n C 3 92 HIS 92 227 227 HIS HIS A . n C 3 93 CYS 93 228 228 CYS CYS A . n C 3 94 TYR 94 229 229 TYR TYR A . n C 3 95 ALA 95 230 230 ALA ALA A . n C 3 96 SER 96 231 231 SER SER A . n C 3 97 VAL 97 232 232 VAL VAL A . n C 3 98 ARG 98 233 233 ARG ARG A . n C 3 99 ASN 99 234 234 ASN ASN A . n C 3 100 VAL 100 235 235 VAL VAL A . n C 3 101 LYS 101 236 236 LYS LYS A . n C 3 102 LYS 102 237 237 LYS LYS A . n C 3 103 ILE 103 238 238 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO 1 301 1 EDO EDO A . E 5 HOH 1 101 16 HOH HOH B . E 5 HOH 2 102 7 HOH HOH B . E 5 HOH 3 103 14 HOH HOH B . F 5 HOH 1 101 11 HOH HOH C . F 5 HOH 2 102 2 HOH HOH C . F 5 HOH 3 103 12 HOH HOH C . F 5 HOH 4 104 3 HOH HOH C . F 5 HOH 5 105 13 HOH HOH C . G 5 HOH 1 401 21 HOH HOH A . G 5 HOH 2 402 6 HOH HOH A . G 5 HOH 3 403 8 HOH HOH A . G 5 HOH 4 404 1 HOH HOH A . G 5 HOH 5 405 10 HOH HOH A . G 5 HOH 6 406 9 HOH HOH A . G 5 HOH 7 407 17 HOH HOH A . G 5 HOH 8 408 4 HOH HOH A . G 5 HOH 9 409 5 HOH HOH A . G 5 HOH 10 410 22 HOH HOH A . G 5 HOH 11 411 20 HOH HOH A . G 5 HOH 12 412 18 HOH HOH A . G 5 HOH 13 413 15 HOH HOH A . G 5 HOH 14 414 19 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 136 ? CG ? C MET 1 CG 2 1 Y 1 A MET 136 ? SD ? C MET 1 SD 3 1 Y 1 A MET 136 ? CE ? C MET 1 CE 4 1 Y 1 A SER 149 ? OG ? C SER 14 OG # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0107 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 4XYQ _cell.length_a 47.770 _cell.length_b 47.770 _cell.length_c 100.250 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4XYQ _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4XYQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.72 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.1M Bis-Tris pH 6.0, 40% PEG 400. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-11-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54179 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-002' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54179 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4XYQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.38 _reflns.d_resolution_low 50.12 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8820 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.081 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.49 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.461 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4XYQ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8347 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.77 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.60 _refine.ls_R_factor_obs 0.20260 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20084 _refine.ls_R_factor_R_free 0.23752 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 437 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.943 _refine.correlation_coeff_Fo_to_Fc_free 0.930 _refine.B_iso_mean 43.988 _refine.aniso_B[1][1] 1.80 _refine.aniso_B[2][2] 1.80 _refine.aniso_B[3][3] -3.60 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.414 _refine.pdbx_overall_ESU_R_Free 0.250 _refine.overall_SU_ML 0.195 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.583 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 865 _refine_hist.pdbx_number_atoms_nucleic_acid 650 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 1541 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 47.77 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.015 ? 1616 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.020 ? 1199 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.537 1.566 ? 2311 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.306 3.000 ? 2777 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.327 5.000 ? 104 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.947 23.654 ? 52 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.175 15.000 ? 165 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.831 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.093 0.200 ? 222 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1388 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 372 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.115 3.738 ? 413 'X-RAY DIFFRACTION' ? r_mcbond_other 3.092 3.738 ? 412 'X-RAY DIFFRACTION' ? r_mcangle_it 4.630 5.589 ? 515 'X-RAY DIFFRACTION' ? r_mcangle_other 4.629 5.590 ? 516 'X-RAY DIFFRACTION' ? r_scbond_it 4.485 4.831 ? 1203 'X-RAY DIFFRACTION' ? r_scbond_other 4.485 4.831 ? 1203 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 6.691 7.212 ? 1796 'X-RAY DIFFRACTION' ? r_long_range_B_refined 9.083 42.527 ? 6645 'X-RAY DIFFRACTION' ? r_long_range_B_other 9.083 42.528 ? 6646 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.number_reflns_R_work 589 _refine_ls_shell.R_factor_R_work 0.261 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4XYQ _struct.title 'Structure of AgrA LytTR domain in complex with promoters' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4XYQ _struct_keywords.text 'Protein-DNA complex, DNA-DNA BINDING PROTEIN complex' _struct_keywords.pdbx_keywords 'DNA/DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 4XYQ 4XYQ ? 1 ? 1 2 PDB 4XYQ 4XYQ ? 2 ? 1 3 UNP AGRA_STAAC Q5HEG2 ? 3 ;DNSVETIELKRGSNSVYVQYDDIMFFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSK ERIVYFKNKEHCYASVRNVKKI ; 137 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4XYQ B 1 ? 16 ? 4XYQ 1 ? 16 ? 1 16 2 2 4XYQ C 1 ? 16 ? 4XYQ 1 ? 16 ? 1 16 3 3 4XYQ A 2 ? 103 ? Q5HEG2 137 ? 238 ? 137 238 # _struct_ref_seq_dif.align_id 3 _struct_ref_seq_dif.pdbx_pdb_id_code 4XYQ _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5HEG2 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 136 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3220 ? 1 MORE -12 ? 1 'SSA (A^2)' 10870 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN C 50 ? ASP C 58 ? ASN A 185 ASP A 193 1 ? 9 HELX_P HELX_P2 AA2 ASN C 99 ? ILE C 103 ? ASN A 234 ILE A 238 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 16 N1 ? ? B DT 2 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 16 N6 ? ? B DT 2 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 15 N1 ? ? B DT 3 C DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 15 N6 ? ? B DT 3 C DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 14 N3 ? ? B DA 4 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 14 O4 ? ? B DA 4 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 13 N3 ? ? B DA 5 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 13 O4 ? ? B DA 5 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC 6 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC 6 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC 6 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 11 N3 ? ? B DA 7 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 11 O4 ? ? B DA 7 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 10 N3 ? ? B DG 8 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 10 O2 ? ? B DG 8 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 10 N4 ? ? B DG 8 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 9 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 9 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 8 N1 ? ? B DT 10 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 8 N6 ? ? B DT 10 C DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 11 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 11 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 12 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 12 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 5 N3 ? ? B DG 13 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 5 O2 ? ? B DG 13 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 5 N4 ? ? B DG 13 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 4 N1 ? ? B DT 14 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 4 N6 ? ? B DT 14 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 15 C DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 15 C DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 2 N1 ? ? B DT 16 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DA 2 N6 ? ? B DT 16 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 5 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR C 7 ? ARG C 12 ? THR A 142 ARG A 147 AA1 2 ASN C 15 ? GLN C 20 ? ASN A 150 GLN A 155 AA2 1 GLN C 44 ? TYR C 48 ? GLN A 179 TYR A 183 AA2 2 ARG C 35 ? LEU C 40 ? ARG A 170 LEU A 175 AA2 3 ILE C 24 ? SER C 29 ? ILE A 159 SER A 164 AA2 4 PHE C 68 ? ASN C 71 ? PHE A 203 ASN A 206 AA2 5 PHE C 61 ? HIS C 65 ? PHE A 196 HIS A 200 AA3 1 ILE C 75 ? ASP C 79 ? ILE A 210 ASP A 214 AA3 2 ILE C 84 ? PHE C 87 ? ILE A 219 PHE A 222 AA3 3 HIS C 92 ? TYR C 94 ? HIS A 227 TYR A 229 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE C 8 ? N ILE A 143 O VAL C 19 ? O VAL A 154 AA2 1 2 O PHE C 47 ? O PHE A 182 N LEU C 36 ? N LEU A 171 AA2 2 3 O HIS C 39 ? O HIS A 174 N MET C 25 ? N MET A 160 AA2 3 4 N PHE C 27 ? N PHE A 162 O VAL C 69 ? O VAL A 204 AA2 4 5 O VAL C 70 ? O VAL A 205 N PHE C 62 ? N PHE A 197 AA3 1 2 N ASP C 79 ? N ASP A 214 O ILE C 84 ? O ILE A 219 AA3 2 3 N VAL C 85 ? N VAL A 220 O CYS C 93 ? O CYS A 228 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id EDO _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'binding site for residue EDO A 301' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id GLU _struct_site_gen.label_asym_id C _struct_site_gen.label_seq_id 28 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id GLU _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 163 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 11 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 12 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.509 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.098 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 147 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 147 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 147 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.12 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.82 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 225 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 83.10 _pdbx_validate_torsion.psi -4.25 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 EDO C1 C N N 231 EDO O1 O N N 232 EDO C2 C N N 233 EDO O2 O N N 234 EDO H11 H N N 235 EDO H12 H N N 236 EDO HO1 H N N 237 EDO H21 H N N 238 EDO H22 H N N 239 EDO HO2 H N N 240 GLN N N N N 241 GLN CA C N S 242 GLN C C N N 243 GLN O O N N 244 GLN CB C N N 245 GLN CG C N N 246 GLN CD C N N 247 GLN OE1 O N N 248 GLN NE2 N N N 249 GLN OXT O N N 250 GLN H H N N 251 GLN H2 H N N 252 GLN HA H N N 253 GLN HB2 H N N 254 GLN HB3 H N N 255 GLN HG2 H N N 256 GLN HG3 H N N 257 GLN HE21 H N N 258 GLN HE22 H N N 259 GLN HXT H N N 260 GLU N N N N 261 GLU CA C N S 262 GLU C C N N 263 GLU O O N N 264 GLU CB C N N 265 GLU CG C N N 266 GLU CD C N N 267 GLU OE1 O N N 268 GLU OE2 O N N 269 GLU OXT O N N 270 GLU H H N N 271 GLU H2 H N N 272 GLU HA H N N 273 GLU HB2 H N N 274 GLU HB3 H N N 275 GLU HG2 H N N 276 GLU HG3 H N N 277 GLU HE2 H N N 278 GLU HXT H N N 279 GLY N N N N 280 GLY CA C N N 281 GLY C C N N 282 GLY O O N N 283 GLY OXT O N N 284 GLY H H N N 285 GLY H2 H N N 286 GLY HA2 H N N 287 GLY HA3 H N N 288 GLY HXT H N N 289 HIS N N N N 290 HIS CA C N S 291 HIS C C N N 292 HIS O O N N 293 HIS CB C N N 294 HIS CG C Y N 295 HIS ND1 N Y N 296 HIS CD2 C Y N 297 HIS CE1 C Y N 298 HIS NE2 N Y N 299 HIS OXT O N N 300 HIS H H N N 301 HIS H2 H N N 302 HIS HA H N N 303 HIS HB2 H N N 304 HIS HB3 H N N 305 HIS HD1 H N N 306 HIS HD2 H N N 307 HIS HE1 H N N 308 HIS HE2 H N N 309 HIS HXT H N N 310 HOH O O N N 311 HOH H1 H N N 312 HOH H2 H N N 313 ILE N N N N 314 ILE CA C N S 315 ILE C C N N 316 ILE O O N N 317 ILE CB C N S 318 ILE CG1 C N N 319 ILE CG2 C N N 320 ILE CD1 C N N 321 ILE OXT O N N 322 ILE H H N N 323 ILE H2 H N N 324 ILE HA H N N 325 ILE HB H N N 326 ILE HG12 H N N 327 ILE HG13 H N N 328 ILE HG21 H N N 329 ILE HG22 H N N 330 ILE HG23 H N N 331 ILE HD11 H N N 332 ILE HD12 H N N 333 ILE HD13 H N N 334 ILE HXT H N N 335 LEU N N N N 336 LEU CA C N S 337 LEU C C N N 338 LEU O O N N 339 LEU CB C N N 340 LEU CG C N N 341 LEU CD1 C N N 342 LEU CD2 C N N 343 LEU OXT O N N 344 LEU H H N N 345 LEU H2 H N N 346 LEU HA H N N 347 LEU HB2 H N N 348 LEU HB3 H N N 349 LEU HG H N N 350 LEU HD11 H N N 351 LEU HD12 H N N 352 LEU HD13 H N N 353 LEU HD21 H N N 354 LEU HD22 H N N 355 LEU HD23 H N N 356 LEU HXT H N N 357 LYS N N N N 358 LYS CA C N S 359 LYS C C N N 360 LYS O O N N 361 LYS CB C N N 362 LYS CG C N N 363 LYS CD C N N 364 LYS CE C N N 365 LYS NZ N N N 366 LYS OXT O N N 367 LYS H H N N 368 LYS H2 H N N 369 LYS HA H N N 370 LYS HB2 H N N 371 LYS HB3 H N N 372 LYS HG2 H N N 373 LYS HG3 H N N 374 LYS HD2 H N N 375 LYS HD3 H N N 376 LYS HE2 H N N 377 LYS HE3 H N N 378 LYS HZ1 H N N 379 LYS HZ2 H N N 380 LYS HZ3 H N N 381 LYS HXT H N N 382 MET N N N N 383 MET CA C N S 384 MET C C N N 385 MET O O N N 386 MET CB C N N 387 MET CG C N N 388 MET SD S N N 389 MET CE C N N 390 MET OXT O N N 391 MET H H N N 392 MET H2 H N N 393 MET HA H N N 394 MET HB2 H N N 395 MET HB3 H N N 396 MET HG2 H N N 397 MET HG3 H N N 398 MET HE1 H N N 399 MET HE2 H N N 400 MET HE3 H N N 401 MET HXT H N N 402 PHE N N N N 403 PHE CA C N S 404 PHE C C N N 405 PHE O O N N 406 PHE CB C N N 407 PHE CG C Y N 408 PHE CD1 C Y N 409 PHE CD2 C Y N 410 PHE CE1 C Y N 411 PHE CE2 C Y N 412 PHE CZ C Y N 413 PHE OXT O N N 414 PHE H H N N 415 PHE H2 H N N 416 PHE HA H N N 417 PHE HB2 H N N 418 PHE HB3 H N N 419 PHE HD1 H N N 420 PHE HD2 H N N 421 PHE HE1 H N N 422 PHE HE2 H N N 423 PHE HZ H N N 424 PHE HXT H N N 425 SER N N N N 426 SER CA C N S 427 SER C C N N 428 SER O O N N 429 SER CB C N N 430 SER OG O N N 431 SER OXT O N N 432 SER H H N N 433 SER H2 H N N 434 SER HA H N N 435 SER HB2 H N N 436 SER HB3 H N N 437 SER HG H N N 438 SER HXT H N N 439 THR N N N N 440 THR CA C N S 441 THR C C N N 442 THR O O N N 443 THR CB C N R 444 THR OG1 O N N 445 THR CG2 C N N 446 THR OXT O N N 447 THR H H N N 448 THR H2 H N N 449 THR HA H N N 450 THR HB H N N 451 THR HG1 H N N 452 THR HG21 H N N 453 THR HG22 H N N 454 THR HG23 H N N 455 THR HXT H N N 456 TYR N N N N 457 TYR CA C N S 458 TYR C C N N 459 TYR O O N N 460 TYR CB C N N 461 TYR CG C Y N 462 TYR CD1 C Y N 463 TYR CD2 C Y N 464 TYR CE1 C Y N 465 TYR CE2 C Y N 466 TYR CZ C Y N 467 TYR OH O N N 468 TYR OXT O N N 469 TYR H H N N 470 TYR H2 H N N 471 TYR HA H N N 472 TYR HB2 H N N 473 TYR HB3 H N N 474 TYR HD1 H N N 475 TYR HD2 H N N 476 TYR HE1 H N N 477 TYR HE2 H N N 478 TYR HH H N N 479 TYR HXT H N N 480 VAL N N N N 481 VAL CA C N S 482 VAL C C N N 483 VAL O O N N 484 VAL CB C N N 485 VAL CG1 C N N 486 VAL CG2 C N N 487 VAL OXT O N N 488 VAL H H N N 489 VAL H2 H N N 490 VAL HA H N N 491 VAL HB H N N 492 VAL HG11 H N N 493 VAL HG12 H N N 494 VAL HG13 H N N 495 VAL HG21 H N N 496 VAL HG22 H N N 497 VAL HG23 H N N 498 VAL HXT H N N 499 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 EDO C1 O1 sing N N 232 EDO C1 C2 sing N N 233 EDO C1 H11 sing N N 234 EDO C1 H12 sing N N 235 EDO O1 HO1 sing N N 236 EDO C2 O2 sing N N 237 EDO C2 H21 sing N N 238 EDO C2 H22 sing N N 239 EDO O2 HO2 sing N N 240 GLN N CA sing N N 241 GLN N H sing N N 242 GLN N H2 sing N N 243 GLN CA C sing N N 244 GLN CA CB sing N N 245 GLN CA HA sing N N 246 GLN C O doub N N 247 GLN C OXT sing N N 248 GLN CB CG sing N N 249 GLN CB HB2 sing N N 250 GLN CB HB3 sing N N 251 GLN CG CD sing N N 252 GLN CG HG2 sing N N 253 GLN CG HG3 sing N N 254 GLN CD OE1 doub N N 255 GLN CD NE2 sing N N 256 GLN NE2 HE21 sing N N 257 GLN NE2 HE22 sing N N 258 GLN OXT HXT sing N N 259 GLU N CA sing N N 260 GLU N H sing N N 261 GLU N H2 sing N N 262 GLU CA C sing N N 263 GLU CA CB sing N N 264 GLU CA HA sing N N 265 GLU C O doub N N 266 GLU C OXT sing N N 267 GLU CB CG sing N N 268 GLU CB HB2 sing N N 269 GLU CB HB3 sing N N 270 GLU CG CD sing N N 271 GLU CG HG2 sing N N 272 GLU CG HG3 sing N N 273 GLU CD OE1 doub N N 274 GLU CD OE2 sing N N 275 GLU OE2 HE2 sing N N 276 GLU OXT HXT sing N N 277 GLY N CA sing N N 278 GLY N H sing N N 279 GLY N H2 sing N N 280 GLY CA C sing N N 281 GLY CA HA2 sing N N 282 GLY CA HA3 sing N N 283 GLY C O doub N N 284 GLY C OXT sing N N 285 GLY OXT HXT sing N N 286 HIS N CA sing N N 287 HIS N H sing N N 288 HIS N H2 sing N N 289 HIS CA C sing N N 290 HIS CA CB sing N N 291 HIS CA HA sing N N 292 HIS C O doub N N 293 HIS C OXT sing N N 294 HIS CB CG sing N N 295 HIS CB HB2 sing N N 296 HIS CB HB3 sing N N 297 HIS CG ND1 sing Y N 298 HIS CG CD2 doub Y N 299 HIS ND1 CE1 doub Y N 300 HIS ND1 HD1 sing N N 301 HIS CD2 NE2 sing Y N 302 HIS CD2 HD2 sing N N 303 HIS CE1 NE2 sing Y N 304 HIS CE1 HE1 sing N N 305 HIS NE2 HE2 sing N N 306 HIS OXT HXT sing N N 307 HOH O H1 sing N N 308 HOH O H2 sing N N 309 ILE N CA sing N N 310 ILE N H sing N N 311 ILE N H2 sing N N 312 ILE CA C sing N N 313 ILE CA CB sing N N 314 ILE CA HA sing N N 315 ILE C O doub N N 316 ILE C OXT sing N N 317 ILE CB CG1 sing N N 318 ILE CB CG2 sing N N 319 ILE CB HB sing N N 320 ILE CG1 CD1 sing N N 321 ILE CG1 HG12 sing N N 322 ILE CG1 HG13 sing N N 323 ILE CG2 HG21 sing N N 324 ILE CG2 HG22 sing N N 325 ILE CG2 HG23 sing N N 326 ILE CD1 HD11 sing N N 327 ILE CD1 HD12 sing N N 328 ILE CD1 HD13 sing N N 329 ILE OXT HXT sing N N 330 LEU N CA sing N N 331 LEU N H sing N N 332 LEU N H2 sing N N 333 LEU CA C sing N N 334 LEU CA CB sing N N 335 LEU CA HA sing N N 336 LEU C O doub N N 337 LEU C OXT sing N N 338 LEU CB CG sing N N 339 LEU CB HB2 sing N N 340 LEU CB HB3 sing N N 341 LEU CG CD1 sing N N 342 LEU CG CD2 sing N N 343 LEU CG HG sing N N 344 LEU CD1 HD11 sing N N 345 LEU CD1 HD12 sing N N 346 LEU CD1 HD13 sing N N 347 LEU CD2 HD21 sing N N 348 LEU CD2 HD22 sing N N 349 LEU CD2 HD23 sing N N 350 LEU OXT HXT sing N N 351 LYS N CA sing N N 352 LYS N H sing N N 353 LYS N H2 sing N N 354 LYS CA C sing N N 355 LYS CA CB sing N N 356 LYS CA HA sing N N 357 LYS C O doub N N 358 LYS C OXT sing N N 359 LYS CB CG sing N N 360 LYS CB HB2 sing N N 361 LYS CB HB3 sing N N 362 LYS CG CD sing N N 363 LYS CG HG2 sing N N 364 LYS CG HG3 sing N N 365 LYS CD CE sing N N 366 LYS CD HD2 sing N N 367 LYS CD HD3 sing N N 368 LYS CE NZ sing N N 369 LYS CE HE2 sing N N 370 LYS CE HE3 sing N N 371 LYS NZ HZ1 sing N N 372 LYS NZ HZ2 sing N N 373 LYS NZ HZ3 sing N N 374 LYS OXT HXT sing N N 375 MET N CA sing N N 376 MET N H sing N N 377 MET N H2 sing N N 378 MET CA C sing N N 379 MET CA CB sing N N 380 MET CA HA sing N N 381 MET C O doub N N 382 MET C OXT sing N N 383 MET CB CG sing N N 384 MET CB HB2 sing N N 385 MET CB HB3 sing N N 386 MET CG SD sing N N 387 MET CG HG2 sing N N 388 MET CG HG3 sing N N 389 MET SD CE sing N N 390 MET CE HE1 sing N N 391 MET CE HE2 sing N N 392 MET CE HE3 sing N N 393 MET OXT HXT sing N N 394 PHE N CA sing N N 395 PHE N H sing N N 396 PHE N H2 sing N N 397 PHE CA C sing N N 398 PHE CA CB sing N N 399 PHE CA HA sing N N 400 PHE C O doub N N 401 PHE C OXT sing N N 402 PHE CB CG sing N N 403 PHE CB HB2 sing N N 404 PHE CB HB3 sing N N 405 PHE CG CD1 doub Y N 406 PHE CG CD2 sing Y N 407 PHE CD1 CE1 sing Y N 408 PHE CD1 HD1 sing N N 409 PHE CD2 CE2 doub Y N 410 PHE CD2 HD2 sing N N 411 PHE CE1 CZ doub Y N 412 PHE CE1 HE1 sing N N 413 PHE CE2 CZ sing Y N 414 PHE CE2 HE2 sing N N 415 PHE CZ HZ sing N N 416 PHE OXT HXT sing N N 417 SER N CA sing N N 418 SER N H sing N N 419 SER N H2 sing N N 420 SER CA C sing N N 421 SER CA CB sing N N 422 SER CA HA sing N N 423 SER C O doub N N 424 SER C OXT sing N N 425 SER CB OG sing N N 426 SER CB HB2 sing N N 427 SER CB HB3 sing N N 428 SER OG HG sing N N 429 SER OXT HXT sing N N 430 THR N CA sing N N 431 THR N H sing N N 432 THR N H2 sing N N 433 THR CA C sing N N 434 THR CA CB sing N N 435 THR CA HA sing N N 436 THR C O doub N N 437 THR C OXT sing N N 438 THR CB OG1 sing N N 439 THR CB CG2 sing N N 440 THR CB HB sing N N 441 THR OG1 HG1 sing N N 442 THR CG2 HG21 sing N N 443 THR CG2 HG22 sing N N 444 THR CG2 HG23 sing N N 445 THR OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 VAL N CA sing N N 471 VAL N H sing N N 472 VAL N H2 sing N N 473 VAL CA C sing N N 474 VAL CA CB sing N N 475 VAL CA HA sing N N 476 VAL C O doub N N 477 VAL C OXT sing N N 478 VAL CB CG1 sing N N 479 VAL CB CG2 sing N N 480 VAL CB HB sing N N 481 VAL CG1 HG11 sing N N 482 VAL CG1 HG12 sing N N 483 VAL CG1 HG13 sing N N 484 VAL CG2 HG21 sing N N 485 VAL CG2 HG22 sing N N 486 VAL CG2 HG23 sing N N 487 VAL OXT HXT sing N N 488 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4XYQ 'double helix' 4XYQ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 16 1_555 -0.362 -0.080 0.160 -15.355 -13.851 1.358 1 B_DT2:DA16_C B 2 ? C 16 ? 20 1 1 A DT 3 1_555 B DA 15 1_555 -0.154 0.126 -0.198 3.541 -3.523 0.562 2 B_DT3:DA15_C B 3 ? C 15 ? 20 1 1 A DA 4 1_555 B DT 14 1_555 0.115 -0.161 -0.215 6.895 -2.837 -0.566 3 B_DA4:DT14_C B 4 ? C 14 ? 20 1 1 A DA 5 1_555 B DT 13 1_555 -0.066 -0.134 -0.056 0.933 -8.277 0.088 4 B_DA5:DT13_C B 5 ? C 13 ? 20 1 1 A DC 6 1_555 B DG 12 1_555 0.112 -0.021 -0.192 -0.951 -6.610 -1.011 5 B_DC6:DG12_C B 6 ? C 12 ? 19 1 1 A DA 7 1_555 B DT 11 1_555 0.135 0.072 0.278 17.671 -11.017 3.860 6 B_DA7:DT11_C B 7 ? C 11 ? 20 1 1 A DG 8 1_555 B DC 10 1_555 -0.257 0.048 0.068 0.333 -18.864 1.359 7 B_DG8:DC10_C B 8 ? C 10 ? 19 1 1 A DT 9 1_555 B DA 9 1_555 -0.210 0.002 0.163 -15.625 -9.260 -3.896 8 B_DT9:DA9_C B 9 ? C 9 ? 20 1 1 A DT 10 1_555 B DA 8 1_555 0.279 0.068 0.088 -12.911 -14.245 4.883 9 B_DT10:DA8_C B 10 ? C 8 ? 20 1 1 A DA 11 1_555 B DT 7 1_555 -0.054 0.017 -0.167 -5.869 -5.455 4.729 10 B_DA11:DT7_C B 11 ? C 7 ? 20 1 1 A DA 12 1_555 B DT 6 1_555 -0.009 -0.040 0.200 8.193 -10.254 9.591 11 B_DA12:DT6_C B 12 ? C 6 ? 20 1 1 A DG 13 1_555 B DC 5 1_555 -0.468 -0.266 -0.086 -3.532 -8.864 -1.000 12 B_DG13:DC5_C B 13 ? C 5 ? 19 1 1 A DT 14 1_555 B DA 4 1_555 0.717 0.306 -0.272 4.577 -6.984 -0.671 13 B_DT14:DA4_C B 14 ? C 4 ? 20 1 1 A DA 15 1_555 B DT 3 1_555 0.153 0.176 0.281 4.252 -11.129 6.781 14 B_DA15:DT3_C B 15 ? C 3 ? 20 1 1 A DT 16 1_555 B DA 2 1_555 0.448 -0.079 -0.028 5.377 -1.864 6.861 15 B_DT16:DA2_C B 16 ? C 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 16 1_555 A DT 3 1_555 B DA 15 1_555 -0.154 -0.466 2.937 3.084 3.206 31.094 -1.396 0.799 2.848 5.942 -5.716 31.403 1 BB_DT2DT3:DA15DA16_CC B 2 ? C 16 ? B 3 ? C 15 ? 1 A DT 3 1_555 B DA 15 1_555 A DA 4 1_555 B DT 14 1_555 -0.056 -0.624 3.304 -0.455 4.385 28.058 -2.277 0.010 3.172 8.974 0.931 28.396 2 BB_DT3DA4:DT14DA15_CC B 3 ? C 15 ? B 4 ? C 14 ? 1 A DA 4 1_555 B DT 14 1_555 A DA 5 1_555 B DT 13 1_555 -1.403 0.186 3.377 -5.852 1.663 39.052 0.067 1.343 3.547 2.469 8.690 39.505 3 BB_DA4DA5:DT13DT14_CC B 4 ? C 14 ? B 5 ? C 13 ? 1 A DA 5 1_555 B DT 13 1_555 A DC 6 1_555 B DG 12 1_555 0.083 -0.463 3.407 -0.063 1.314 31.914 -1.088 -0.163 3.386 2.389 0.114 31.941 4 BB_DA5DC6:DG12DT13_CC B 5 ? C 13 ? B 6 ? C 12 ? 1 A DC 6 1_555 B DG 12 1_555 A DA 7 1_555 B DT 11 1_555 0.538 1.100 3.092 -2.256 14.360 26.704 -0.866 -1.493 3.200 28.559 4.488 30.341 5 BB_DC6DA7:DT11DG12_CC B 6 ? C 12 ? B 7 ? C 11 ? 1 A DA 7 1_555 B DT 11 1_555 A DG 8 1_555 B DC 10 1_555 -0.168 -0.277 3.786 -1.515 5.158 38.807 -1.126 0.041 3.724 7.718 2.267 39.164 6 BB_DA7DG8:DC10DT11_CC B 7 ? C 11 ? B 8 ? C 10 ? 1 A DG 8 1_555 B DC 10 1_555 A DT 9 1_555 B DA 9 1_555 -0.354 -0.785 3.734 0.500 -5.074 37.982 -0.461 0.611 3.799 -7.753 -0.764 38.310 7 BB_DG8DT9:DA9DC10_CC B 8 ? C 10 ? B 9 ? C 9 ? 1 A DT 9 1_555 B DA 9 1_555 A DT 10 1_555 B DA 8 1_555 -0.169 -0.259 3.234 1.844 -1.601 34.749 -0.191 0.560 3.229 -2.676 -3.083 34.833 8 BB_DT9DT10:DA8DA9_CC B 9 ? C 9 ? B 10 ? C 8 ? 1 A DT 10 1_555 B DA 8 1_555 A DA 11 1_555 B DT 7 1_555 -0.104 2.088 3.223 -0.189 -6.391 45.745 3.178 0.117 2.922 -8.174 0.242 46.166 9 BB_DT10DA11:DT7DA8_CC B 10 ? C 8 ? B 11 ? C 7 ? 1 A DA 11 1_555 B DT 7 1_555 A DA 12 1_555 B DT 6 1_555 0.275 0.605 3.089 -5.509 9.107 24.933 -0.945 -1.940 2.993 19.971 12.081 27.076 10 BB_DA11DA12:DT6DT7_CC B 11 ? C 7 ? B 12 ? C 6 ? 1 A DA 12 1_555 B DT 6 1_555 A DG 13 1_555 B DC 5 1_555 -1.533 -0.311 3.390 -5.857 8.503 36.073 -1.670 1.569 3.431 13.396 9.228 37.474 11 BB_DA12DG13:DC5DT6_CC B 12 ? C 6 ? B 13 ? C 5 ? 1 A DG 13 1_555 B DC 5 1_555 A DT 14 1_555 B DA 4 1_555 -0.082 -0.089 3.162 0.131 1.828 34.446 -0.424 0.158 3.153 3.085 -0.221 34.493 12 BB_DG13DT14:DA4DC5_CC B 13 ? C 5 ? B 14 ? C 4 ? 1 A DT 14 1_555 B DA 4 1_555 A DA 15 1_555 B DT 3 1_555 0.423 -0.522 3.339 -3.205 9.047 35.231 -2.084 -1.119 3.068 14.615 5.178 36.475 13 BB_DT14DA15:DT3DA4_CC B 14 ? C 4 ? B 15 ? C 3 ? 1 A DA 15 1_555 B DT 3 1_555 A DT 16 1_555 B DA 2 1_555 0.400 -0.298 3.272 4.142 -2.675 30.353 -0.031 0.066 3.309 -5.067 -7.845 30.742 14 BB_DA15DT16:DA2DT3_CC B 15 ? C 3 ? B 16 ? C 2 ? # _atom_sites.entry_id 4XYQ _atom_sites.fract_transf_matrix[1][1] 0.020934 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020934 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009975 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_