HEADER HYDROLASE 03-FEB-15 4XYX TITLE NANB PLUS OPTACTAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIALIDASE B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 40-697; COMPND 5 SYNONYM: NEURAMINIDASE B; COMPND 6 EC: 3.2.1.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: NANB, SP_1687; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.W.ROGERS,P.BREAR,L.YANG,G.L.TAYLOR,N.J.WESTWOOD REVDAT 2 10-JAN-24 4XYX 1 REMARK REVDAT 1 10-FEB-16 4XYX 0 JRNL AUTH P.BREAR,G.W.ROGERS,L.YANG,A.S.CHEN,J.B.O.MITCHELL, JRNL AUTH 2 G.L.TAYLOR,N.J.WESTWOOD JRNL TITL THE HUNT FOR SERENDIPITOUS ALLOSTERIC SITES: DISCOVERY OF A JRNL TITL 2 NOVEL ALLOSTERIC INHIBITOR OF THE BACTERIAL SIALIDASE NANB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 40351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2594 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.25000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.223 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.201 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5411 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7329 ; 2.371 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 661 ; 7.581 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;36.117 ;25.020 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 928 ;14.831 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.387 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 786 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4050 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4XYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42642 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.22100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 2VW2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM IMIDAZOLE PH8, 5% PEG8000, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.80150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.16000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.32400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.16000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.80150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.32400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN A 227 O3 PO4 A 709 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 134 CE2 TRP A 134 CD2 0.078 REMARK 500 HIS A 137 CG HIS A 137 CD2 0.078 REMARK 500 GLU A 303 CD GLU A 303 OE2 0.096 REMARK 500 HIS A 485 CG HIS A 485 CD2 0.068 REMARK 500 TRP A 674 CE2 TRP A 674 CD2 0.092 REMARK 500 HIS A 680 CG HIS A 680 CD2 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 262 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 310 CG - CD - NE ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 569 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 616 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 113.27 -163.35 REMARK 500 ASN A 212 45.22 -101.14 REMARK 500 ILE A 232 -61.07 -98.46 REMARK 500 GLN A 240 17.14 56.76 REMARK 500 ILE A 246 65.08 65.48 REMARK 500 SER A 273 -171.67 -177.02 REMARK 500 ASP A 327 92.15 69.90 REMARK 500 PRO A 347 170.73 -58.23 REMARK 500 ASN A 366 77.05 44.80 REMARK 500 ASN A 397 20.82 40.59 REMARK 500 PRO A 455 69.13 -65.96 REMARK 500 ALA A 540 59.89 -92.74 REMARK 500 SER A 615 146.19 -171.19 REMARK 500 ASP A 633 10.21 -143.00 REMARK 500 ALA A 652 -118.82 -120.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 696 LYS A 697 137.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 43Z A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 717 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 718 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 719 DBREF 4XYX A 40 697 UNP Q54727 NANB_STRPN 40 697 SEQADV 4XYX GLY A 643 UNP Q54727 ASP 643 CONFLICT SEQADV 4XYX LEU A 698 UNP Q54727 EXPRESSION TAG SEQADV 4XYX GLU A 699 UNP Q54727 EXPRESSION TAG SEQRES 1 A 660 SER PRO ILE PHE GLN GLY GLY SER TYR GLN LEU ASN ASN SEQRES 2 A 660 LYS SER ILE ASP ILE SER SER LEU LEU LEU ASP LYS LEU SEQRES 3 A 660 SER GLY GLU SER GLN THR VAL VAL MET LYS PHE LYS ALA SEQRES 4 A 660 ASP LYS PRO ASN SER LEU GLN ALA LEU PHE GLY LEU SER SEQRES 5 A 660 ASN SER LYS ALA GLY PHE LYS ASN ASN TYR PHE SER ILE SEQRES 6 A 660 PHE MET ARG ASP SER GLY GLU ILE GLY VAL GLU ILE ARG SEQRES 7 A 660 ASP ALA GLN LYS GLY ILE ASN TYR LEU PHE SER ARG PRO SEQRES 8 A 660 ALA SER LEU TRP GLY LYS HIS LYS GLY GLN ALA VAL GLU SEQRES 9 A 660 ASN THR LEU VAL PHE VAL SER ASP SER LYS ASP LYS THR SEQRES 10 A 660 TYR THR MET TYR VAL ASN GLY ILE GLU VAL PHE SER GLU SEQRES 11 A 660 THR VAL ASP THR PHE LEU PRO ILE SER ASN ILE ASN GLY SEQRES 12 A 660 ILE ASP LYS ALA THR LEU GLY ALA VAL ASN ARG GLU GLY SEQRES 13 A 660 LYS GLU HIS TYR LEU ALA LYS GLY SER ILE ASP GLU ILE SEQRES 14 A 660 SER LEU PHE ASN LYS ALA ILE SER ASP GLN GLU VAL SER SEQRES 15 A 660 THR ILE PRO LEU SER ASN PRO PHE GLN LEU ILE PHE GLN SEQRES 16 A 660 SER GLY ASP SER THR GLN ALA ASN TYR PHE ARG ILE PRO SEQRES 17 A 660 THR LEU TYR THR LEU SER SER GLY ARG VAL LEU SER SER SEQRES 18 A 660 ILE ASP ALA ARG TYR GLY GLY THR HIS ASP SER LYS SER SEQRES 19 A 660 LYS ILE ASN ILE ALA THR SER TYR SER ASP ASP ASN GLY SEQRES 20 A 660 LYS THR TRP SER GLU PRO ILE PHE ALA MET LYS PHE ASN SEQRES 21 A 660 ASP TYR GLU GLU GLN LEU VAL TYR TRP PRO ARG ASP ASN SEQRES 22 A 660 LYS LEU LYS ASN SER GLN ILE SER GLY SER ALA SER PHE SEQRES 23 A 660 ILE ASP SER SER ILE VAL GLU ASP LYS LYS SER GLY LYS SEQRES 24 A 660 THR ILE LEU LEU ALA ASP VAL MET PRO ALA GLY ILE GLY SEQRES 25 A 660 ASN ASN ASN ALA ASN LYS ALA ASP SER GLY PHE LYS GLU SEQRES 26 A 660 ILE ASN GLY HIS TYR TYR LEU LYS LEU LYS LYS ASN GLY SEQRES 27 A 660 ASP ASN ASP PHE ARG TYR THR VAL ARG GLU ASN GLY VAL SEQRES 28 A 660 VAL TYR ASN GLU THR THR ASN LYS PRO THR ASN TYR THR SEQRES 29 A 660 ILE ASN ASP LYS TYR GLU VAL LEU GLU GLY GLY LYS SER SEQRES 30 A 660 LEU THR VAL GLU GLN TYR SER VAL ASP PHE ASP SER GLY SEQRES 31 A 660 SER LEU ARG GLU ARG HIS ASN GLY LYS GLN VAL PRO MET SEQRES 32 A 660 ASN VAL PHE TYR LYS ASP SER LEU PHE LYS VAL THR PRO SEQRES 33 A 660 THR ASN TYR ILE ALA MET THR THR SER GLN ASN ARG GLY SEQRES 34 A 660 GLU SER TRP GLU GLN PHE LYS LEU LEU PRO PRO PHE LEU SEQRES 35 A 660 GLY GLU LYS HIS ASN GLY THR TYR LEU CYS PRO GLY GLN SEQRES 36 A 660 GLY LEU ALA LEU LYS SER SER ASN ARG LEU ILE PHE ALA SEQRES 37 A 660 THR TYR THR SER GLY GLU LEU THR TYR LEU ILE SER ASP SEQRES 38 A 660 ASP SER GLY GLN THR TRP LYS LYS SER SER ALA SER ILE SEQRES 39 A 660 PRO PHE LYS ASN ALA THR ALA GLU ALA GLN MET VAL GLU SEQRES 40 A 660 LEU ARG ASP GLY VAL ILE ARG THR PHE PHE ARG THR THR SEQRES 41 A 660 THR GLY LYS ILE ALA TYR MET THR SER ARG ASP SER GLY SEQRES 42 A 660 GLU THR TRP SER LYS VAL SER TYR ILE ASP GLY ILE GLN SEQRES 43 A 660 GLN THR SER TYR GLY THR GLN VAL SER ALA ILE LYS TYR SEQRES 44 A 660 SER GLN LEU ILE ASP GLY LYS GLU ALA VAL ILE LEU SER SEQRES 45 A 660 THR PRO ASN SER ARG SER GLY ARG LYS GLY GLY GLN LEU SEQRES 46 A 660 VAL VAL GLY LEU VAL ASN LYS GLU ASP ASP SER ILE ASP SEQRES 47 A 660 TRP LYS TYR HIS TYR GLY ILE ASP LEU PRO SER TYR GLY SEQRES 48 A 660 TYR ALA TYR SER ALA ILE THR GLU LEU PRO ASN HIS HIS SEQRES 49 A 660 ILE GLY VAL LEU PHE GLU LYS TYR ASP SER TRP SER ARG SEQRES 50 A 660 ASN GLU LEU HIS LEU SER ASN VAL VAL GLN TYR ILE ASP SEQRES 51 A 660 LEU GLU ILE ASN ASP LEU THR LYS LEU GLU HET 43Z A 701 19 HET PO4 A 702 5 HET PO4 A 703 5 HET PO4 A 704 5 HET PO4 A 705 5 HET PO4 A 706 5 HET PO4 A 707 5 HET PO4 A 708 5 HET PO4 A 709 5 HET PO4 A 710 5 HET PO4 A 711 5 HET PO4 A 712 5 HET PO4 A 713 5 HET PO4 A 714 5 HET PO4 A 715 5 HET PO4 A 716 5 HET PO4 A 717 5 HET PO4 A 718 5 HET PO4 A 719 5 HETNAM 43Z OPTACTAMIDE HETNAM PO4 PHOSPHATE ION FORMUL 2 43Z C13 H15 CL F N O3 FORMUL 3 PO4 18(O4 P 3-) FORMUL 21 HOH *284(H2 O) HELIX 1 AA1 ILE A 57 LEU A 62 1 6 HELIX 2 AA2 ALA A 119 GLY A 122 5 4 HELIX 3 AA3 PRO A 176 ILE A 180 5 5 HELIX 4 AA4 SER A 216 THR A 222 1 7 HELIX 5 AA5 GLU A 691 THR A 696 1 6 SHEET 1 AA1 6 PHE A 43 ASN A 51 0 SHEET 2 AA1 6 LYS A 202 PHE A 211 -1 O GLY A 203 N LEU A 50 SHEET 3 AA1 6 GLN A 70 LYS A 77 -1 N LYS A 75 O GLU A 207 SHEET 4 AA1 6 ASN A 144 ASP A 151 -1 O SER A 150 N GLN A 70 SHEET 5 AA1 6 THR A 156 VAL A 161 -1 O THR A 158 N VAL A 149 SHEET 6 AA1 6 ILE A 164 THR A 170 -1 O ILE A 164 N VAL A 161 SHEET 1 AA2 6 ILE A 55 ASP A 56 0 SHEET 2 AA2 6 LYS A 185 LEU A 188 -1 O LEU A 188 N ILE A 55 SHEET 3 AA2 6 LEU A 84 SER A 91 -1 N GLY A 89 O THR A 187 SHEET 4 AA2 6 TYR A 101 ARG A 107 -1 O ILE A 104 N LEU A 87 SHEET 5 AA2 6 ILE A 112 ASP A 118 -1 O GLY A 113 N PHE A 105 SHEET 6 AA2 6 ILE A 123 ARG A 129 -1 O TYR A 125 N ILE A 116 SHEET 1 AA3 2 LYS A 136 HIS A 137 0 SHEET 2 AA3 2 GLN A 140 ALA A 141 -1 O GLN A 140 N HIS A 137 SHEET 1 AA4 2 VAL A 191 ARG A 193 0 SHEET 2 AA4 2 LYS A 196 HIS A 198 -1 O LYS A 196 N ARG A 193 SHEET 1 AA5 3 TYR A 243 ARG A 245 0 SHEET 2 AA5 3 VAL A 257 ARG A 264 -1 O ASP A 262 N ARG A 245 SHEET 3 AA5 3 TYR A 250 THR A 251 -1 N TYR A 250 O LEU A 258 SHEET 1 AA6 4 TYR A 243 ARG A 245 0 SHEET 2 AA6 4 VAL A 257 ARG A 264 -1 O ASP A 262 N ARG A 245 SHEET 3 AA6 4 ILE A 275 SER A 282 -1 O ASN A 276 N ALA A 263 SHEET 4 AA6 4 ILE A 293 MET A 296 -1 O ALA A 295 N ILE A 277 SHEET 1 AA7 5 LYS A 475 LEU A 476 0 SHEET 2 AA7 5 TYR A 458 SER A 464 -1 N MET A 461 O LYS A 475 SHEET 3 AA7 5 THR A 339 MET A 346 -1 N THR A 339 O SER A 464 SHEET 4 AA7 5 SER A 324 GLU A 332 -1 N SER A 324 O MET A 346 SHEET 5 AA7 5 GLY A 493 GLN A 494 1 O GLY A 493 N SER A 328 SHEET 1 AA8 7 PHE A 362 ILE A 365 0 SHEET 2 AA8 7 HIS A 368 LYS A 375 -1 O HIS A 368 N ILE A 365 SHEET 3 AA8 7 TYR A 383 VAL A 385 -1 O VAL A 385 N LEU A 371 SHEET 4 AA8 7 VAL A 390 ASN A 393 -1 O TYR A 392 N THR A 384 SHEET 5 AA8 7 PRO A 399 ILE A 404 -1 O THR A 400 N VAL A 391 SHEET 6 AA8 7 VAL A 410 GLU A 412 -1 O LEU A 411 N THR A 403 SHEET 7 AA8 7 LYS A 415 SER A 416 -1 O LYS A 415 N GLU A 412 SHEET 1 AA9 3 PHE A 362 ILE A 365 0 SHEET 2 AA9 3 HIS A 368 LYS A 375 -1 O HIS A 368 N ILE A 365 SHEET 3 AA9 3 PHE A 451 LYS A 452 -1 O LYS A 452 N LYS A 374 SHEET 1 AB1 2 THR A 418 ASP A 425 0 SHEET 2 AB1 2 ARG A 432 PRO A 441 -1 O ARG A 434 N SER A 423 SHEET 1 AB2 5 TYR A 489 LEU A 490 0 SHEET 2 AB2 5 THR A 508 THR A 510 -1 O TYR A 509 N TYR A 489 SHEET 3 AB2 5 GLU A 513 SER A 519 -1 O THR A 515 N THR A 508 SHEET 4 AB2 5 LEU A 504 PHE A 506 -1 N LEU A 504 O SER A 519 SHEET 5 AB2 5 LEU A 496 ALA A 497 -1 N LEU A 496 O ILE A 505 SHEET 1 AB3 4 TYR A 489 LEU A 490 0 SHEET 2 AB3 4 THR A 508 THR A 510 -1 O TYR A 509 N TYR A 489 SHEET 3 AB3 4 GLU A 513 SER A 519 -1 O THR A 515 N THR A 508 SHEET 4 AB3 4 LYS A 527 SER A 532 -1 O LYS A 527 N ILE A 518 SHEET 1 AB4 4 ALA A 542 ARG A 548 0 SHEET 2 AB4 4 VAL A 551 PHE A 556 -1 O ARG A 553 N VAL A 545 SHEET 3 AB4 4 ALA A 564 SER A 568 -1 O ALA A 564 N PHE A 556 SHEET 4 AB4 4 SER A 579 TYR A 580 -1 O SER A 579 N TYR A 565 SHEET 1 AB5 4 SER A 594 LYS A 597 0 SHEET 2 AB5 4 ALA A 607 PRO A 613 -1 O SER A 611 N SER A 594 SHEET 3 AB5 4 GLY A 622 VAL A 629 -1 O GLY A 627 N VAL A 608 SHEET 4 AB5 4 ILE A 636 GLY A 643 -1 O LYS A 639 N VAL A 626 SHEET 1 AB6 3 SER A 654 GLU A 658 0 SHEET 2 AB6 3 ILE A 664 GLU A 669 -1 O GLY A 665 N THR A 657 SHEET 3 AB6 3 VAL A 685 LEU A 690 -1 O LEU A 690 N ILE A 664 CISPEP 1 SER A 271 LYS A 272 0 3.11 CISPEP 2 LYS A 697 LEU A 698 0 23.24 SITE 1 AC1 12 TYR A 250 THR A 251 ASN A 312 GLN A 494 SITE 2 AC1 12 ILE A 596 SER A 599 THR A 657 GLU A 658 SITE 3 AC1 12 LEU A 659 HIS A 662 ARG A 676 HOH A1084 SITE 1 AC2 7 ARG A 129 GLU A 165 VAL A 166 ARG A 310 SITE 2 AC2 7 HIS A 680 LEU A 681 SER A 682 SITE 1 AC3 6 GLY A 255 ASP A 283 ASN A 285 PRO A 660 SITE 2 AC3 6 TRP A 674 ARG A 676 SITE 1 AC4 4 SER A 238 PRO A 292 ILE A 293 PHE A 294 SITE 1 AC5 5 PHE A 294 ALA A 295 MET A 296 TRP A 471 SITE 2 AC5 5 GLN A 473 SITE 1 AC6 3 VAL A 385 ILE A 404 ASN A 405 SITE 1 AC7 8 ARG A 245 ILE A 246 ARG A 264 ASP A 270 SITE 2 AC7 8 ILE A 326 ASP A 327 GLU A 541 TYR A 653 SITE 1 AC8 6 LYS A 313 ASN A 316 SER A 317 GLN A 600 SITE 2 AC8 6 HIS A 662 HOH A 817 SITE 1 AC9 4 LEU A 225 SER A 226 ASN A 227 PO4 A 717 SITE 1 AD1 5 LEU A 84 PHE A 105 GLU A 115 LEU A 126 SITE 2 AD1 5 LYS A 335 SITE 1 AD2 4 ASN A 124 TYR A 125 LEU A 126 PHE A 127 SITE 1 AD3 4 GLY A 195 GLU A 197 HIS A 435 ASP A 448 SITE 1 AD4 3 LYS A 527 LYS A 528 GLU A 573 SITE 1 AD5 6 TYR A 160 GLY A 163 ASP A 217 VAL A 220 SITE 2 AD5 6 SER A 221 HOH A1049 SITE 1 AD6 5 TYR A 369 PRO A 478 PRO A 479 PHE A 480 SITE 2 AD6 5 TRP A 526 SITE 1 AD7 4 ASN A 162 GLY A 163 LEU A 225 HOH A 979 SITE 1 AD8 5 SER A 221 THR A 222 ILE A 223 LEU A 225 SITE 2 AD8 5 PO4 A 709 SITE 1 AD9 5 LYS A 475 LEU A 476 GLY A 523 GLN A 524 SITE 2 AD9 5 TRP A 526 SITE 1 AE1 3 GLY A 96 LYS A 98 ASN A 99 CRYST1 75.603 82.648 116.320 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013227 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008597 0.00000