HEADER TRANSPORT PROTEIN 04-FEB-15 4XZ6 TITLE TMOX IN COMPLEX WITH TMAO COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE BETAINE/PROLINE ABC TRANSPORTER, PERIPLASMIC COMPND 3 SUBSTRATE-BINDING PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUEGERIA POMEROYI (STRAIN ATCC 700808 / DSM SOURCE 3 15171 / DSS-3); SOURCE 4 ORGANISM_TAXID: 246200; SOURCE 5 STRAIN: ATCC 700808 / DSM 15171 / DSS-3; SOURCE 6 GENE: SPO1548; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ABC TRANSPORTER, SUBSTRATE BINDING PROTEIN, COMPLEX, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.Z.ZHANG,C.Y.LI REVDAT 2 28-OCT-15 4XZ6 1 JRNL REVDAT 1 19-AUG-15 4XZ6 0 JRNL AUTH C.Y.LI,X.L.CHEN,X.SHAO,T.D.WEI,P.WANG,B.B.XIE,Q.L.QIN, JRNL AUTH 2 X.Y.ZHANG,H.N.SU,X.Y.SONG,M.SHI,B.C.ZHOU,Y.Z.ZHANG JRNL TITL MECHANISTIC INSIGHT INTO TRIMETHYLAMINE N-OXIDE RECOGNITION JRNL TITL 2 BY THE MARINE BACTERIUM RUEGERIA POMEROYI DSS-3 JRNL REF J.BACTERIOL. V. 197 3378 2015 JRNL REFN ESSN 1098-5530 JRNL PMID 26283766 JRNL DOI 10.1128/JB.00542-15 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 22143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1558 - 4.3873 1.00 2785 159 0.1641 0.2140 REMARK 3 2 4.3873 - 3.4828 0.98 2758 140 0.1348 0.2032 REMARK 3 3 3.4828 - 3.0427 0.98 2716 163 0.1718 0.2143 REMARK 3 4 3.0427 - 2.7645 0.96 2625 164 0.1956 0.2859 REMARK 3 5 2.7645 - 2.5664 0.94 2626 136 0.2070 0.2557 REMARK 3 6 2.5664 - 2.4151 0.93 2555 129 0.1972 0.2891 REMARK 3 7 2.4151 - 2.2942 0.90 2480 135 0.2044 0.3135 REMARK 3 8 2.2942 - 2.1943 0.88 2458 114 0.2132 0.3113 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 40.91 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.97840 REMARK 3 B22 (A**2) : 0.74780 REMARK 3 B33 (A**2) : -12.72620 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.18320 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4709 REMARK 3 ANGLE : 1.053 6444 REMARK 3 CHIRALITY : 0.071 670 REMARK 3 PLANARITY : 0.005 847 REMARK 3 DIHEDRAL : 15.198 1636 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XZ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23366 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.751 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE, PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 21.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M BIS REMARK 280 -TRIS (PH 5.5) AND 25% (WT/VOL) POLYETHYLENE GLYCOL 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 67.48950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LEU A 3 REMARK 465 PHE A 4 REMARK 465 ARG A 5 REMARK 465 GLU A 6 REMARK 465 ILE A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ASN A 10 REMARK 465 ASP A 11 REMARK 465 PRO A 12 REMARK 465 GLY A 13 REMARK 465 PRO A 14 REMARK 465 THR A 15 REMARK 465 GLY A 16 REMARK 465 ARG A 17 REMARK 465 MET A 18 REMARK 465 LYS A 19 REMARK 465 ASN A 20 REMARK 465 MET A 21 REMARK 465 LYS A 22 REMARK 465 THR A 23 REMARK 465 PHE A 24 REMARK 465 THR A 25 REMARK 465 THR A 26 REMARK 465 ALA A 27 REMARK 465 LEU A 28 REMARK 465 ALA A 29 REMARK 465 THR A 30 REMARK 465 GLY A 31 REMARK 465 VAL A 32 REMARK 465 LEU A 33 REMARK 465 ALA A 34 REMARK 465 LEU A 35 REMARK 465 CYS A 36 REMARK 465 PRO A 37 REMARK 465 LEU A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 LEU A 41 REMARK 465 ALA A 42 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 LEU B 3 REMARK 465 PHE B 4 REMARK 465 ARG B 5 REMARK 465 GLU B 6 REMARK 465 ILE B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 ASN B 10 REMARK 465 ASP B 11 REMARK 465 PRO B 12 REMARK 465 GLY B 13 REMARK 465 PRO B 14 REMARK 465 THR B 15 REMARK 465 GLY B 16 REMARK 465 ARG B 17 REMARK 465 MET B 18 REMARK 465 LYS B 19 REMARK 465 ASN B 20 REMARK 465 MET B 21 REMARK 465 LYS B 22 REMARK 465 THR B 23 REMARK 465 PHE B 24 REMARK 465 THR B 25 REMARK 465 THR B 26 REMARK 465 ALA B 27 REMARK 465 LEU B 28 REMARK 465 ALA B 29 REMARK 465 THR B 30 REMARK 465 GLY B 31 REMARK 465 VAL B 32 REMARK 465 LEU B 33 REMARK 465 ALA B 34 REMARK 465 LEU B 35 REMARK 465 CYS B 36 REMARK 465 PRO B 37 REMARK 465 LEU B 38 REMARK 465 ALA B 39 REMARK 465 ALA B 40 REMARK 465 LEU B 41 REMARK 465 ALA B 42 REMARK 465 GLY B 333 REMARK 465 HIS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 332 CB - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 44 157.84 -47.22 REMARK 500 HIS A 53 -152.24 -117.89 REMARK 500 CYS A 143 75.23 -156.03 REMARK 500 PRO A 174 152.46 -46.22 REMARK 500 TRP A 177 -87.60 -104.88 REMARK 500 LYS A 247 -29.78 -144.46 REMARK 500 PRO A 255 0.11 -59.29 REMARK 500 THR A 266 64.84 -118.58 REMARK 500 ASP A 332 -13.03 80.82 REMARK 500 HIS B 53 -153.55 -128.58 REMARK 500 ASP B 126 37.83 -83.12 REMARK 500 LEU B 146 157.37 -48.04 REMARK 500 THR B 161 -157.54 -114.13 REMARK 500 GLU B 163 25.96 48.65 REMARK 500 TRP B 177 -77.10 -96.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 249 O REMARK 620 2 VAL A 251 O 72.1 REMARK 620 3 ASN A 254 O 71.8 99.4 REMARK 620 4 ALA A 257 O 96.8 165.0 86.3 REMARK 620 5 ASP A 260 OD1 167.0 98.8 119.7 90.2 REMARK 620 6 ASP A 260 OD2 135.4 77.9 81.6 116.9 47.6 REMARK 620 7 HOH A 570 O 92.0 96.7 152.3 73.1 79.6 124.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 249 O REMARK 620 2 VAL B 251 O 79.8 REMARK 620 3 ASN B 254 O 74.2 98.2 REMARK 620 4 ALA B 257 O 85.0 163.5 83.8 REMARK 620 5 ASP B 260 OD1 161.4 104.0 122.4 88.5 REMARK 620 6 ASP B 260 OD2 150.0 90.8 79.1 105.6 48.6 REMARK 620 7 HOH B 581 O 83.8 87.4 155.8 84.5 78.3 124.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TMO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 403 DBREF 4XZ6 A 1 333 UNP Q5LT66 Q5LT66_RUEPO 1 333 DBREF 4XZ6 B 1 333 UNP Q5LT66 Q5LT66_RUEPO 1 333 SEQADV 4XZ6 HIS A 334 UNP Q5LT66 EXPRESSION TAG SEQADV 4XZ6 HIS A 335 UNP Q5LT66 EXPRESSION TAG SEQADV 4XZ6 HIS A 336 UNP Q5LT66 EXPRESSION TAG SEQADV 4XZ6 HIS A 337 UNP Q5LT66 EXPRESSION TAG SEQADV 4XZ6 HIS A 338 UNP Q5LT66 EXPRESSION TAG SEQADV 4XZ6 HIS A 339 UNP Q5LT66 EXPRESSION TAG SEQADV 4XZ6 HIS B 334 UNP Q5LT66 EXPRESSION TAG SEQADV 4XZ6 HIS B 335 UNP Q5LT66 EXPRESSION TAG SEQADV 4XZ6 HIS B 336 UNP Q5LT66 EXPRESSION TAG SEQADV 4XZ6 HIS B 337 UNP Q5LT66 EXPRESSION TAG SEQADV 4XZ6 HIS B 338 UNP Q5LT66 EXPRESSION TAG SEQADV 4XZ6 HIS B 339 UNP Q5LT66 EXPRESSION TAG SEQRES 1 A 339 MET ARG LEU PHE ARG GLU ILE ALA ALA ASN ASP PRO GLY SEQRES 2 A 339 PRO THR GLY ARG MET LYS ASN MET LYS THR PHE THR THR SEQRES 3 A 339 ALA LEU ALA THR GLY VAL LEU ALA LEU CYS PRO LEU ALA SEQRES 4 A 339 ALA LEU ALA ASP SER SER ASP PRO ILE VAL ILE PRO ILE SEQRES 5 A 339 HIS ASN TRP SER SER GLN ILE VAL MET SER ASN VAL VAL SEQRES 6 A 339 GLY GLN ILE PHE GLU GLU MET GLY VAL ALA VAL GLU PHE SEQRES 7 A 339 VAL THR THR ASP SER GLN ALA VAL TYR GLU SER VAL ARG SEQRES 8 A 339 LEU GLY ASP VAL THR LEU GLU LEU GLU VAL TRP GLU GLY SEQRES 9 A 339 ALA PHE GLY ALA SER PHE ARG ALA ALA LEU GLU LYS GLY SEQRES 10 A 339 GLY ILE VAL ASP VAL GLY ASP HIS ASP ALA VAL THR ARG SEQRES 11 A 339 GLU ASP TRP TRP TYR PRO MET TRP THR LYS ASP ALA CYS SEQRES 12 A 339 PRO GLY LEU PRO ASP TRP LYS ALA LEU ASN ASP CYS ALA SEQRES 13 A 339 ALA VAL PHE ALA THR ALA GLU THR GLY ASP LYS GLY ARG SEQRES 14 A 339 TYR LEU ASP GLY PRO VAL ASP TRP LEU LYS HIS GLY LYS SEQRES 15 A 339 GLU ARG VAL GLU ALA LEU GLY MET ASN PHE GLU VAL ILE SEQRES 16 A 339 ASN ALA GLY SER ALA ALA ALA LEU TRP ALA GLU ILE GLY SEQRES 17 A 339 ALA ALA GLU ALA ASP LYS ARG PRO VAL VAL VAL PHE ASN SEQRES 18 A 339 TRP THR PRO ASN PHE ALA GLU ALA VAL TRP PRO GLY GLU SEQRES 19 A 339 PHE VAL GLU PHE PRO GLU TRP VAL ASP GLY CYS ASP LYS SEQRES 20 A 339 ASP PRO ALA VAL GLY PRO ASN PRO ASP ALA LEU TYR ASP SEQRES 21 A 339 CYS GLY ASN PRO ALA THR GLY TYR LEU LYS LYS ALA ALA SEQRES 22 A 339 TRP GLU GLY MET GLU ALA LYS TRP PRO ASP ALA TYR ALA SEQRES 23 A 339 VAL LEU THR ARG ILE SER PHE THR ASN PRO GLN ILE ALA SEQRES 24 A 339 GLU MET ALA LYS LEU VAL ASP VAL ASP GLU MET GLU PRO SEQRES 25 A 339 ASP GLU ALA ALA GLU ALA TRP LEU GLU ALA ASN GLU ASP SEQRES 26 A 339 VAL TRP ARG PRO TRP LEU ASP GLY HIS HIS HIS HIS HIS SEQRES 27 A 339 HIS SEQRES 1 B 339 MET ARG LEU PHE ARG GLU ILE ALA ALA ASN ASP PRO GLY SEQRES 2 B 339 PRO THR GLY ARG MET LYS ASN MET LYS THR PHE THR THR SEQRES 3 B 339 ALA LEU ALA THR GLY VAL LEU ALA LEU CYS PRO LEU ALA SEQRES 4 B 339 ALA LEU ALA ASP SER SER ASP PRO ILE VAL ILE PRO ILE SEQRES 5 B 339 HIS ASN TRP SER SER GLN ILE VAL MET SER ASN VAL VAL SEQRES 6 B 339 GLY GLN ILE PHE GLU GLU MET GLY VAL ALA VAL GLU PHE SEQRES 7 B 339 VAL THR THR ASP SER GLN ALA VAL TYR GLU SER VAL ARG SEQRES 8 B 339 LEU GLY ASP VAL THR LEU GLU LEU GLU VAL TRP GLU GLY SEQRES 9 B 339 ALA PHE GLY ALA SER PHE ARG ALA ALA LEU GLU LYS GLY SEQRES 10 B 339 GLY ILE VAL ASP VAL GLY ASP HIS ASP ALA VAL THR ARG SEQRES 11 B 339 GLU ASP TRP TRP TYR PRO MET TRP THR LYS ASP ALA CYS SEQRES 12 B 339 PRO GLY LEU PRO ASP TRP LYS ALA LEU ASN ASP CYS ALA SEQRES 13 B 339 ALA VAL PHE ALA THR ALA GLU THR GLY ASP LYS GLY ARG SEQRES 14 B 339 TYR LEU ASP GLY PRO VAL ASP TRP LEU LYS HIS GLY LYS SEQRES 15 B 339 GLU ARG VAL GLU ALA LEU GLY MET ASN PHE GLU VAL ILE SEQRES 16 B 339 ASN ALA GLY SER ALA ALA ALA LEU TRP ALA GLU ILE GLY SEQRES 17 B 339 ALA ALA GLU ALA ASP LYS ARG PRO VAL VAL VAL PHE ASN SEQRES 18 B 339 TRP THR PRO ASN PHE ALA GLU ALA VAL TRP PRO GLY GLU SEQRES 19 B 339 PHE VAL GLU PHE PRO GLU TRP VAL ASP GLY CYS ASP LYS SEQRES 20 B 339 ASP PRO ALA VAL GLY PRO ASN PRO ASP ALA LEU TYR ASP SEQRES 21 B 339 CYS GLY ASN PRO ALA THR GLY TYR LEU LYS LYS ALA ALA SEQRES 22 B 339 TRP GLU GLY MET GLU ALA LYS TRP PRO ASP ALA TYR ALA SEQRES 23 B 339 VAL LEU THR ARG ILE SER PHE THR ASN PRO GLN ILE ALA SEQRES 24 B 339 GLU MET ALA LYS LEU VAL ASP VAL ASP GLU MET GLU PRO SEQRES 25 B 339 ASP GLU ALA ALA GLU ALA TRP LEU GLU ALA ASN GLU ASP SEQRES 26 B 339 VAL TRP ARG PRO TRP LEU ASP GLY HIS HIS HIS HIS HIS SEQRES 27 B 339 HIS HET TMO A 401 5 HET CA A 402 1 HET GOL A 403 6 HET GOL A 404 6 HET TMO B 401 5 HET CA B 402 1 HET TRS B 403 8 HETNAM TMO TRIMETHYLAMINE OXIDE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 3 TMO 2(C3 H9 N O) FORMUL 4 CA 2(CA 2+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 TRS C4 H12 N O3 1+ FORMUL 10 HOH *164(H2 O) HELIX 1 AA1 TRP A 55 MET A 72 1 18 HELIX 2 AA2 ALA A 85 LEU A 92 1 8 HELIX 3 AA3 GLU A 103 GLY A 117 1 15 HELIX 4 AA4 TRP A 138 CYS A 143 1 6 HELIX 5 AA5 ASP A 148 CYS A 155 1 8 HELIX 6 AA6 ALA A 156 ALA A 160 5 5 HELIX 7 AA7 HIS A 180 GLY A 189 1 10 HELIX 8 AA8 SER A 199 GLU A 211 1 13 HELIX 9 AA9 PHE A 226 TRP A 231 1 6 HELIX 10 AB1 GLY A 276 TRP A 281 1 6 HELIX 11 AB2 TRP A 281 ILE A 291 1 11 HELIX 12 AB3 THR A 294 VAL A 307 1 14 HELIX 13 AB4 GLU A 311 ASN A 323 1 13 HELIX 14 AB5 ASN A 323 ARG A 328 1 6 HELIX 15 AB6 PRO A 329 ASP A 332 5 4 HELIX 16 AB7 TRP B 55 MET B 72 1 18 HELIX 17 AB8 ALA B 85 LEU B 92 1 8 HELIX 18 AB9 GLU B 103 GLU B 115 1 13 HELIX 19 AC1 TRP B 138 CYS B 143 1 6 HELIX 20 AC2 ASP B 148 CYS B 155 1 8 HELIX 21 AC3 CYS B 155 ALA B 160 1 6 HELIX 22 AC4 HIS B 180 LEU B 188 1 9 HELIX 23 AC5 SER B 199 ALA B 210 1 12 HELIX 24 AC6 PHE B 226 TRP B 231 1 6 HELIX 25 AC7 GLY B 276 TRP B 281 1 6 HELIX 26 AC8 TRP B 281 ILE B 291 1 11 HELIX 27 AC9 THR B 294 VAL B 307 1 14 HELIX 28 AD1 GLU B 311 ASN B 323 1 13 HELIX 29 AD2 ASN B 323 ARG B 328 1 6 HELIX 30 AD3 PRO B 329 ASP B 332 5 4 SHEET 1 AA1 2 ILE A 48 ILE A 52 0 SHEET 2 AA1 2 VAL A 76 THR A 80 1 O VAL A 79 N ILE A 52 SHEET 1 AA2 3 LEU A 97 TRP A 102 0 SHEET 2 AA2 3 LEU A 269 TRP A 274 -1 O ALA A 272 N GLU A 98 SHEET 3 AA2 3 ILE A 119 ASP A 124 -1 N VAL A 120 O ALA A 273 SHEET 1 AA3 5 PHE A 192 ASN A 196 0 SHEET 2 AA3 5 GLY A 168 ASP A 172 1 N GLY A 168 O GLU A 193 SHEET 3 AA3 5 VAL A 218 THR A 223 1 O PHE A 220 N LEU A 171 SHEET 4 AA3 5 ARG A 130 PRO A 136 -1 N TRP A 134 O VAL A 219 SHEET 5 AA3 5 GLY A 233 PHE A 235 -1 O GLU A 234 N TYR A 135 SHEET 1 AA4 2 ILE B 48 ILE B 52 0 SHEET 2 AA4 2 VAL B 76 THR B 80 1 O GLU B 77 N ILE B 50 SHEET 1 AA5 3 LEU B 97 TRP B 102 0 SHEET 2 AA5 3 LEU B 269 TRP B 274 -1 O ALA B 272 N GLU B 98 SHEET 3 AA5 3 ILE B 119 ASP B 124 -1 N VAL B 122 O LYS B 271 SHEET 1 AA6 5 PHE B 192 ASN B 196 0 SHEET 2 AA6 5 GLY B 168 ASP B 172 1 N TYR B 170 O ILE B 195 SHEET 3 AA6 5 VAL B 218 THR B 223 1 O PHE B 220 N LEU B 171 SHEET 4 AA6 5 ARG B 130 PRO B 136 -1 N TRP B 134 O VAL B 219 SHEET 5 AA6 5 GLY B 233 PHE B 235 -1 O GLU B 234 N TYR B 135 SSBOND 1 CYS A 143 CYS A 155 1555 1555 2.03 SSBOND 2 CYS A 245 CYS A 261 1555 1555 2.02 SSBOND 3 CYS B 143 CYS B 155 1555 1555 2.03 SSBOND 4 CYS B 245 CYS B 261 1555 1555 2.03 LINK O PRO A 249 CA CA A 402 1555 1555 2.73 LINK O VAL A 251 CA CA A 402 1555 1555 2.36 LINK O ASN A 254 CA CA A 402 1555 1555 2.47 LINK O ALA A 257 CA CA A 402 1555 1555 2.33 LINK OD1 ASP A 260 CA CA A 402 1555 1555 2.61 LINK OD2 ASP A 260 CA CA A 402 1555 1555 2.78 LINK O PRO B 249 CA CA B 402 1555 1555 2.50 LINK O VAL B 251 CA CA B 402 1555 1555 2.27 LINK O ASN B 254 CA CA B 402 1555 1555 2.52 LINK O ALA B 257 CA CA B 402 1555 1555 2.36 LINK OD1 ASP B 260 CA CA B 402 1555 1555 2.62 LINK OD2 ASP B 260 CA CA B 402 1555 1555 2.73 LINK CA CA A 402 O HOH A 570 1555 1555 2.67 LINK CA CA B 402 O HOH B 581 1555 1555 2.62 CISPEP 1 LEU A 146 PRO A 147 0 9.12 CISPEP 2 THR A 223 PRO A 224 0 7.73 CISPEP 3 LEU B 146 PRO B 147 0 10.06 CISPEP 4 THR B 223 PRO B 224 0 1.62 SITE 1 AC1 5 TRP A 102 PHE A 106 GLU A 131 TRP A 177 SITE 2 AC1 5 PHE A 220 SITE 1 AC2 6 PRO A 249 VAL A 251 ASN A 254 ALA A 257 SITE 2 AC2 6 ASP A 260 HOH A 570 SITE 1 AC3 5 SER A 89 LEU A 92 GLU A 103 THR A 266 SITE 2 AC3 5 HOH A 518 SITE 1 AC4 3 ASP A 154 PRO B 249 ASP B 256 SITE 1 AC5 6 TRP B 55 TRP B 102 PHE B 106 GLU B 131 SITE 2 AC5 6 TRP B 177 PHE B 220 SITE 1 AC6 6 PRO B 249 VAL B 251 ASN B 254 ALA B 257 SITE 2 AC6 6 ASP B 260 HOH B 581 SITE 1 AC7 8 GLY A 117 GLY A 118 GLU A 275 TRP B 149 SITE 2 AC7 8 LEU B 188 ASN B 254 HOH B 502 HOH B 504 CRYST1 29.624 134.979 58.366 90.00 90.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033756 0.000000 0.000090 0.00000 SCALE2 0.000000 0.007409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017133 0.00000