HEADER RNA BINDING PROTEIN 04-FEB-15 4XZA TITLE THE CRYSTAL STRUCTURE OF ERVE VIRUS NUCLEOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HEAD DOMAIN (UNP RESIDUES 1-482); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERVE VIRUS; SOURCE 3 ORGANISM_TAXID: 248062; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOPROTEIN, ERVE VIRUS, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.GUO,W.WANG,X.LIU,X.WANG,J.WANG,T.HUO,B.LIU REVDAT 4 08-NOV-23 4XZA 1 REMARK REVDAT 3 05-FEB-20 4XZA 1 JRNL REMARK REVDAT 2 18-NOV-15 4XZA 1 JRNL REVDAT 1 02-SEP-15 4XZA 0 JRNL AUTH W.WANG,X.LIU,X.WANG,H.DONG,C.MA,J.WANG,B.LIU,Y.MAO,Y.WANG, JRNL AUTH 2 T.LI,C.YANG,Y.GUO JRNL TITL STRUCTURAL AND FUNCTIONAL DIVERSITY OF NAIROVIRUS-ENCODED JRNL TITL 2 NUCLEOPROTEINS. JRNL REF J.VIROL. V. 89 11740 2015 JRNL REFN ESSN 1098-5514 JRNL PMID 26246561 JRNL DOI 10.1128/JVI.01680-15 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 61367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0534 - 4.3347 0.98 4236 139 0.1567 0.1659 REMARK 3 2 4.3347 - 3.4409 0.97 4143 139 0.1475 0.1607 REMARK 3 3 3.4409 - 3.0061 1.00 4274 141 0.1647 0.2148 REMARK 3 4 3.0061 - 2.7312 1.00 4253 146 0.1761 0.2240 REMARK 3 5 2.7312 - 2.5355 1.00 4251 143 0.1736 0.2044 REMARK 3 6 2.5355 - 2.3860 1.00 4285 144 0.1794 0.2036 REMARK 3 7 2.3860 - 2.2665 1.00 4253 147 0.1752 0.2325 REMARK 3 8 2.2665 - 2.1679 1.00 4251 135 0.1755 0.2366 REMARK 3 9 2.1679 - 2.0844 1.00 4226 142 0.1819 0.2395 REMARK 3 10 2.0844 - 2.0125 1.00 4245 137 0.1764 0.2386 REMARK 3 11 2.0125 - 1.9496 1.00 4279 148 0.1796 0.2257 REMARK 3 12 1.9496 - 1.8938 1.00 4267 141 0.1947 0.2374 REMARK 3 13 1.8938 - 1.8440 1.00 4208 151 0.1977 0.2684 REMARK 3 14 1.8440 - 1.7990 0.99 4206 137 0.2103 0.2693 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5867 REMARK 3 ANGLE : 0.992 7930 REMARK 3 CHIRALITY : 0.038 887 REMARK 3 PLANARITY : 0.005 1015 REMARK 3 DIHEDRAL : 13.985 2151 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61401 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3U3I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% TRYPTONE,0.05M HEPES,20% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.14300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 ARG A 10 REMARK 465 GLY A 182 REMARK 465 GLY A 183 REMARK 465 GLY A 184 REMARK 465 PRO A 185 REMARK 465 LYS A 186 REMARK 465 ARG A 187 REMARK 465 GLY A 188 REMARK 465 VAL A 189 REMARK 465 SER A 190 REMARK 465 GLU A 191 REMARK 465 GLU A 192 REMARK 465 HIS A 193 REMARK 465 VAL A 194 REMARK 465 ARG A 195 REMARK 465 CYS A 196 REMARK 465 CYS A 197 REMARK 465 VAL A 198 REMARK 465 ASP A 199 REMARK 465 ILE A 200 REMARK 465 MET A 201 REMARK 465 ASN A 202 REMARK 465 GLY A 203 REMARK 465 ASN A 204 REMARK 465 LEU A 205 REMARK 465 SER A 206 REMARK 465 ALA A 207 REMARK 465 LEU A 208 REMARK 465 ILE A 209 REMARK 465 ASN A 210 REMARK 465 PRO A 211 REMARK 465 ALA A 212 REMARK 465 TRP A 213 REMARK 465 GLY A 214 REMARK 465 ASP A 215 REMARK 465 ILE A 216 REMARK 465 ASP A 217 REMARK 465 LYS A 218 REMARK 465 LYS A 219 REMARK 465 ASN A 220 REMARK 465 LYS A 221 REMARK 465 ASN A 222 REMARK 465 GLY A 223 REMARK 465 LEU A 224 REMARK 465 MET A 225 REMARK 465 LEU A 226 REMARK 465 LEU A 227 REMARK 465 THR A 228 REMARK 465 THR A 229 REMARK 465 GLY A 230 REMARK 465 ILE A 231 REMARK 465 ALA A 232 REMARK 465 LYS A 233 REMARK 465 LEU A 234 REMARK 465 ARG A 235 REMARK 465 GLU A 236 REMARK 465 LEU A 237 REMARK 465 TYR A 238 REMARK 465 GLY A 239 REMARK 465 PRO A 240 REMARK 465 ALA A 241 REMARK 465 ALA A 242 REMARK 465 MET A 243 REMARK 465 VAL A 244 REMARK 465 LYS A 245 REMARK 465 VAL A 246 REMARK 465 GLN A 247 REMARK 465 GLN A 248 REMARK 465 ALA A 249 REMARK 465 ALA A 250 REMARK 465 ASP A 251 REMARK 465 LYS A 252 REMARK 465 PHE A 253 REMARK 465 GLY A 254 REMARK 465 GLU A 255 REMARK 465 TRP A 256 REMARK 465 GLY A 257 REMARK 465 LYS A 258 REMARK 465 ALA A 259 REMARK 465 GLN A 260 REMARK 465 ASP A 261 REMARK 465 VAL A 262 REMARK 465 LEU A 263 REMARK 465 ASP A 264 REMARK 465 GLN A 265 REMARK 465 SER A 266 REMARK 465 ARG A 267 REMARK 465 VAL A 268 REMARK 465 GLN A 269 REMARK 465 GLU A 270 REMARK 465 ILE A 271 REMARK 465 HIS A 272 REMARK 465 GLN A 273 REMARK 465 VAL A 274 REMARK 465 LEU A 275 REMARK 465 LEU A 276 REMARK 465 LYS A 277 REMARK 465 SER A 278 REMARK 465 ILE A 279 REMARK 465 ALA A 280 REMARK 465 GLU A 281 REMARK 465 SER A 282 REMARK 465 THR A 283 REMARK 465 SER A 284 REMARK 465 LEU A 285 REMARK 465 GLY A 286 REMARK 465 GLY A 287 REMARK 465 GLY A 288 REMARK 465 ALA A 289 REMARK 465 ALA A 290 REMARK 465 ASP A 478 REMARK 465 PRO A 479 REMARK 465 PRO A 480 REMARK 465 LYS A 481 REMARK 465 ILE A 482 REMARK 465 ARG B 10 REMARK 465 GLY B 182 REMARK 465 GLY B 183 REMARK 465 GLY B 184 REMARK 465 PRO B 185 REMARK 465 LYS B 186 REMARK 465 ARG B 187 REMARK 465 GLY B 188 REMARK 465 VAL B 189 REMARK 465 SER B 190 REMARK 465 GLU B 191 REMARK 465 GLU B 192 REMARK 465 HIS B 193 REMARK 465 VAL B 194 REMARK 465 ARG B 195 REMARK 465 CYS B 196 REMARK 465 CYS B 197 REMARK 465 VAL B 198 REMARK 465 ASP B 199 REMARK 465 ILE B 200 REMARK 465 MET B 201 REMARK 465 ASN B 202 REMARK 465 GLY B 203 REMARK 465 ASN B 204 REMARK 465 LEU B 205 REMARK 465 SER B 206 REMARK 465 ALA B 207 REMARK 465 LEU B 208 REMARK 465 ILE B 209 REMARK 465 ASN B 210 REMARK 465 PRO B 211 REMARK 465 ALA B 212 REMARK 465 TRP B 213 REMARK 465 GLY B 214 REMARK 465 ASP B 215 REMARK 465 ILE B 216 REMARK 465 ASP B 217 REMARK 465 LYS B 218 REMARK 465 LYS B 219 REMARK 465 ASN B 220 REMARK 465 LYS B 221 REMARK 465 ASN B 222 REMARK 465 GLY B 223 REMARK 465 LEU B 224 REMARK 465 MET B 225 REMARK 465 LEU B 226 REMARK 465 LEU B 227 REMARK 465 THR B 228 REMARK 465 THR B 229 REMARK 465 GLY B 230 REMARK 465 ILE B 231 REMARK 465 ALA B 232 REMARK 465 LYS B 233 REMARK 465 LEU B 234 REMARK 465 ARG B 235 REMARK 465 GLU B 236 REMARK 465 LEU B 237 REMARK 465 TYR B 238 REMARK 465 GLY B 239 REMARK 465 PRO B 240 REMARK 465 ALA B 241 REMARK 465 ALA B 242 REMARK 465 MET B 243 REMARK 465 VAL B 244 REMARK 465 LYS B 245 REMARK 465 VAL B 246 REMARK 465 GLN B 247 REMARK 465 GLN B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 ASP B 251 REMARK 465 LYS B 252 REMARK 465 PHE B 253 REMARK 465 GLY B 254 REMARK 465 GLU B 255 REMARK 465 TRP B 256 REMARK 465 GLY B 257 REMARK 465 LYS B 258 REMARK 465 ALA B 259 REMARK 465 GLN B 260 REMARK 465 ASP B 261 REMARK 465 VAL B 262 REMARK 465 LEU B 263 REMARK 465 ASP B 264 REMARK 465 GLN B 265 REMARK 465 SER B 266 REMARK 465 ARG B 267 REMARK 465 VAL B 268 REMARK 465 GLN B 269 REMARK 465 GLU B 270 REMARK 465 ILE B 271 REMARK 465 HIS B 272 REMARK 465 GLN B 273 REMARK 465 VAL B 274 REMARK 465 LEU B 275 REMARK 465 LEU B 276 REMARK 465 LYS B 277 REMARK 465 SER B 278 REMARK 465 ILE B 279 REMARK 465 ALA B 280 REMARK 465 GLU B 281 REMARK 465 SER B 282 REMARK 465 THR B 283 REMARK 465 SER B 284 REMARK 465 LEU B 285 REMARK 465 GLY B 286 REMARK 465 GLY B 287 REMARK 465 GLY B 288 REMARK 465 ALA B 289 REMARK 465 ALA B 290 REMARK 465 VAL B 291 REMARK 465 PHE B 292 REMARK 465 ASP B 478 REMARK 465 PRO B 479 REMARK 465 PRO B 480 REMARK 465 LYS B 481 REMARK 465 ILE B 482 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 295 O HOH A 666 1.88 REMARK 500 O HOH A 787 O HOH A 806 1.89 REMARK 500 O HOH A 826 O HOH A 833 1.90 REMARK 500 O HOH A 789 O HOH A 826 1.92 REMARK 500 O ARG B 181 O HOH B 806 1.93 REMARK 500 OE2 GLU A 147 O HOH A 501 1.93 REMARK 500 OG SER B 27 O HOH B 501 1.99 REMARK 500 O VAL A 291 O HOH A 789 1.99 REMARK 500 O HOH B 516 O HOH B 518 2.00 REMARK 500 O HOH B 755 O HOH B 773 2.01 REMARK 500 OE1 GLU A 87 O HOH A 836 2.01 REMARK 500 OE2 GLU B 87 O HOH B 695 2.08 REMARK 500 O HOH A 817 O HOH A 835 2.10 REMARK 500 NZ LYS A 341 O HOH A 502 2.11 REMARK 500 O HOH B 811 O HOH B 813 2.12 REMARK 500 O HOH A 756 O HOH A 802 2.13 REMARK 500 O ASN B 294 O HOH B 781 2.14 REMARK 500 SD MET A 365 O HOH B 782 2.14 REMARK 500 O HOH B 819 O HOH B 822 2.15 REMARK 500 O HOH A 794 O HOH A 832 2.15 REMARK 500 O HOH A 579 O HOH A 591 2.16 REMARK 500 O VAL B 156 O HOH B 772 2.18 REMARK 500 OE2 GLU A 396 O HOH A 503 2.18 REMARK 500 O MET B 1 O HOH B 760 2.18 REMARK 500 NE2 GLN B 99 O HOH B 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 560 O HOH B 602 -1648 1.90 REMARK 500 NH1 ARG A 345 O HOH A 501 1455 2.02 REMARK 500 O HOH A 542 O HOH B 572 -1748 2.12 REMARK 500 O HOH A 580 O HOH B 583 -1647 2.12 REMARK 500 O HOH A 717 O HOH B 611 -1747 2.13 REMARK 500 O HOH A 596 O HOH B 612 -1648 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 54 -51.50 -121.14 REMARK 500 SER A 154 -160.72 -162.06 REMARK 500 LYS A 293 -38.32 -34.67 REMARK 500 ASP A 344 38.85 -93.01 REMARK 500 LEU A 348 96.77 -57.30 REMARK 500 HIS A 394 69.74 -150.85 REMARK 500 SER A 402 119.39 -172.61 REMARK 500 ASP A 440 -118.52 54.96 REMARK 500 GLN A 464 44.25 -89.93 REMARK 500 SER B 154 -159.45 -167.41 REMARK 500 ARG B 334 -75.05 -104.59 REMARK 500 SER B 402 119.45 -166.98 REMARK 500 ASP B 440 -118.19 54.92 REMARK 500 GLN B 464 36.88 -87.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 4XZA A 1 482 UNP J3S7E7 J3S7E7_9VIRU 1 482 DBREF 4XZA B 1 482 UNP J3S7E7 J3S7E7_9VIRU 1 482 SEQRES 1 A 482 MET GLU ASN LEU ILE ASP PHE SER GLY ARG ASP GLY LEU SEQRES 2 A 482 ASP ARG TRP LEU ARG ALA THR PHE PRO ASP VAL ILE LEU SEQRES 3 A 482 SER VAL GLY LEU THR ASN TYR GLY SER LEU MET THR SER SEQRES 4 A 482 VAL PRO ASP LEU SER HIS PHE GLU GLN MET ALA ARG GLN SEQRES 5 A 482 ALA LYS SER GLU GLN GLU LYS ASP ALA VAL TYR SER LYS SEQRES 6 A 482 ALA LEU THR GLU ALA THR ARG LYS ALA ALA PRO ILE ALA SEQRES 7 A 482 ALA CYS ALA LEU THR SER SER LYS GLU MET VAL LYS LYS SEQRES 8 A 482 GLY LEU GLN TRP PHE GLU ASP GLN ILE ILE SER GLU ASP SEQRES 9 A 482 GLY ASN PHE LEU VAL TRP HIS GLN ASN TYR GLU GLN LEU SEQRES 10 A 482 LYS LYS ALA PRO PRO SER PHE GLU GLN LEU MET GLY TYR SEQRES 11 A 482 GLN MET SER ALA LEU ASN TRP ARG GLN SER VAL GLY TYR SEQRES 12 A 482 GLY GLN LEU GLU GLU THR ALA VAL LEU VAL SER GLN VAL SEQRES 13 A 482 ILE ALA GLN PHE SER VAL PRO GLY THR LEU VAL VAL THR SEQRES 14 A 482 VAL GLN GLU MET ILE LYS ASP MET ILE ALA ARG ARG GLY SEQRES 15 A 482 GLY GLY PRO LYS ARG GLY VAL SER GLU GLU HIS VAL ARG SEQRES 16 A 482 CYS CYS VAL ASP ILE MET ASN GLY ASN LEU SER ALA LEU SEQRES 17 A 482 ILE ASN PRO ALA TRP GLY ASP ILE ASP LYS LYS ASN LYS SEQRES 18 A 482 ASN GLY LEU MET LEU LEU THR THR GLY ILE ALA LYS LEU SEQRES 19 A 482 ARG GLU LEU TYR GLY PRO ALA ALA MET VAL LYS VAL GLN SEQRES 20 A 482 GLN ALA ALA ASP LYS PHE GLY GLU TRP GLY LYS ALA GLN SEQRES 21 A 482 ASP VAL LEU ASP GLN SER ARG VAL GLN GLU ILE HIS GLN SEQRES 22 A 482 VAL LEU LEU LYS SER ILE ALA GLU SER THR SER LEU GLY SEQRES 23 A 482 GLY GLY ALA ALA VAL PHE LYS ASN GLN ILE ALA GLN ILE SEQRES 24 A 482 ASP SER VAL PHE SER SER TYR TYR TRP MET TRP ARG ALA SEQRES 25 A 482 GLY ILE THR PRO GLU SER PHE PRO LEU LEU SER ASP PHE SEQRES 26 A 482 LEU PHE GLU LEU GLY GLN ASN ALA ARG GLY SER ALA LYS SEQRES 27 A 482 ILE ILE LYS THR LEU ASP ARG ILE GLY LEU LYS TRP SER SEQRES 28 A 482 LYS PRO LEU VAL ASN LEU PHE ALA ASP SER THR PHE LYS SEQRES 29 A 482 MET GLY ARG ILE HIS MET HIS PRO ALA ILE LEU THR THR SEQRES 30 A 482 GLY ARG LEU ASN GLU MET GLY LEU CYS PHE GLY ILE ILE SEQRES 31 A 482 PRO ALA SER HIS PRO GLU SER ALA VAL ASN GLY SER GLY SEQRES 32 A 482 PHE ALA LYS ASN ILE LEU ASN VAL ARG THR ASP GLY MET SEQRES 33 A 482 ASN PRO SER ALA GLN LEU ILE VAL GLN LEU PHE ASP ILE SEQRES 34 A 482 GLN ARG GLN SER ARG THR LEU SER ASP LEU ASP VAL VAL SEQRES 35 A 482 SER SER GLU HIS LEU PHE HIS GLN ILE LEU VAL GLY LYS SEQRES 36 A 482 ARG THR ALA TYR GLN ASN ALA PHE GLN VAL LYS GLY ASN SEQRES 37 A 482 ALA THR ASP THR LYS ILE VAL GLY PHE ASP PRO PRO LYS SEQRES 38 A 482 ILE SEQRES 1 B 482 MET GLU ASN LEU ILE ASP PHE SER GLY ARG ASP GLY LEU SEQRES 2 B 482 ASP ARG TRP LEU ARG ALA THR PHE PRO ASP VAL ILE LEU SEQRES 3 B 482 SER VAL GLY LEU THR ASN TYR GLY SER LEU MET THR SER SEQRES 4 B 482 VAL PRO ASP LEU SER HIS PHE GLU GLN MET ALA ARG GLN SEQRES 5 B 482 ALA LYS SER GLU GLN GLU LYS ASP ALA VAL TYR SER LYS SEQRES 6 B 482 ALA LEU THR GLU ALA THR ARG LYS ALA ALA PRO ILE ALA SEQRES 7 B 482 ALA CYS ALA LEU THR SER SER LYS GLU MET VAL LYS LYS SEQRES 8 B 482 GLY LEU GLN TRP PHE GLU ASP GLN ILE ILE SER GLU ASP SEQRES 9 B 482 GLY ASN PHE LEU VAL TRP HIS GLN ASN TYR GLU GLN LEU SEQRES 10 B 482 LYS LYS ALA PRO PRO SER PHE GLU GLN LEU MET GLY TYR SEQRES 11 B 482 GLN MET SER ALA LEU ASN TRP ARG GLN SER VAL GLY TYR SEQRES 12 B 482 GLY GLN LEU GLU GLU THR ALA VAL LEU VAL SER GLN VAL SEQRES 13 B 482 ILE ALA GLN PHE SER VAL PRO GLY THR LEU VAL VAL THR SEQRES 14 B 482 VAL GLN GLU MET ILE LYS ASP MET ILE ALA ARG ARG GLY SEQRES 15 B 482 GLY GLY PRO LYS ARG GLY VAL SER GLU GLU HIS VAL ARG SEQRES 16 B 482 CYS CYS VAL ASP ILE MET ASN GLY ASN LEU SER ALA LEU SEQRES 17 B 482 ILE ASN PRO ALA TRP GLY ASP ILE ASP LYS LYS ASN LYS SEQRES 18 B 482 ASN GLY LEU MET LEU LEU THR THR GLY ILE ALA LYS LEU SEQRES 19 B 482 ARG GLU LEU TYR GLY PRO ALA ALA MET VAL LYS VAL GLN SEQRES 20 B 482 GLN ALA ALA ASP LYS PHE GLY GLU TRP GLY LYS ALA GLN SEQRES 21 B 482 ASP VAL LEU ASP GLN SER ARG VAL GLN GLU ILE HIS GLN SEQRES 22 B 482 VAL LEU LEU LYS SER ILE ALA GLU SER THR SER LEU GLY SEQRES 23 B 482 GLY GLY ALA ALA VAL PHE LYS ASN GLN ILE ALA GLN ILE SEQRES 24 B 482 ASP SER VAL PHE SER SER TYR TYR TRP MET TRP ARG ALA SEQRES 25 B 482 GLY ILE THR PRO GLU SER PHE PRO LEU LEU SER ASP PHE SEQRES 26 B 482 LEU PHE GLU LEU GLY GLN ASN ALA ARG GLY SER ALA LYS SEQRES 27 B 482 ILE ILE LYS THR LEU ASP ARG ILE GLY LEU LYS TRP SER SEQRES 28 B 482 LYS PRO LEU VAL ASN LEU PHE ALA ASP SER THR PHE LYS SEQRES 29 B 482 MET GLY ARG ILE HIS MET HIS PRO ALA ILE LEU THR THR SEQRES 30 B 482 GLY ARG LEU ASN GLU MET GLY LEU CYS PHE GLY ILE ILE SEQRES 31 B 482 PRO ALA SER HIS PRO GLU SER ALA VAL ASN GLY SER GLY SEQRES 32 B 482 PHE ALA LYS ASN ILE LEU ASN VAL ARG THR ASP GLY MET SEQRES 33 B 482 ASN PRO SER ALA GLN LEU ILE VAL GLN LEU PHE ASP ILE SEQRES 34 B 482 GLN ARG GLN SER ARG THR LEU SER ASP LEU ASP VAL VAL SEQRES 35 B 482 SER SER GLU HIS LEU PHE HIS GLN ILE LEU VAL GLY LYS SEQRES 36 B 482 ARG THR ALA TYR GLN ASN ALA PHE GLN VAL LYS GLY ASN SEQRES 37 B 482 ALA THR ASP THR LYS ILE VAL GLY PHE ASP PRO PRO LYS SEQRES 38 B 482 ILE FORMUL 3 HOH *675(H2 O) HELIX 1 AA1 GLY A 12 PHE A 21 1 10 HELIX 2 AA2 HIS A 45 GLN A 52 1 8 HELIX 3 AA3 SER A 55 ARG A 72 1 18 HELIX 4 AA4 PRO A 76 SER A 85 1 10 HELIX 5 AA5 SER A 85 ILE A 100 1 16 HELIX 6 AA6 ASP A 104 GLN A 112 1 9 HELIX 7 AA7 ASN A 113 LYS A 118 1 6 HELIX 8 AA8 SER A 123 GLY A 142 1 20 HELIX 9 AA9 TYR A 143 THR A 149 5 7 HELIX 10 AB1 PRO A 163 THR A 165 5 3 HELIX 11 AB2 LEU A 166 ARG A 180 1 15 HELIX 12 AB3 PHE A 292 ILE A 296 5 5 HELIX 13 AB4 ASP A 300 ALA A 312 1 13 HELIX 14 AB5 SER A 318 GLY A 330 1 13 HELIX 15 AB6 GLY A 335 ASP A 344 1 10 HELIX 16 AB7 SER A 351 ASN A 356 1 6 HELIX 17 AB8 GLY A 366 MET A 370 5 5 HELIX 18 AB9 ARG A 379 GLY A 388 1 10 HELIX 19 AC1 HIS A 394 GLY A 401 5 8 HELIX 20 AC2 PHE A 404 VAL A 411 5 8 HELIX 21 AC3 ASN A 417 ARG A 434 1 18 HELIX 22 AC4 LEU A 439 VAL A 442 5 4 HELIX 23 AC5 SER A 443 GLY A 454 1 12 HELIX 24 AC6 ASN A 468 THR A 472 5 5 HELIX 25 AC7 GLY B 12 PHE B 21 1 10 HELIX 26 AC8 HIS B 45 ALA B 53 1 9 HELIX 27 AC9 SER B 55 ARG B 72 1 18 HELIX 28 AD1 PRO B 76 SER B 85 1 10 HELIX 29 AD2 SER B 85 GLU B 103 1 19 HELIX 30 AD3 ASP B 104 GLN B 112 1 9 HELIX 31 AD4 ASN B 113 LYS B 118 1 6 HELIX 32 AD5 SER B 123 GLY B 142 1 20 HELIX 33 AD6 LEU B 146 THR B 149 5 4 HELIX 34 AD7 PRO B 163 THR B 165 5 3 HELIX 35 AD8 LEU B 166 ARG B 180 1 15 HELIX 36 AD9 ASP B 300 ALA B 312 1 13 HELIX 37 AE1 SER B 318 ASN B 332 1 15 HELIX 38 AE2 GLY B 335 ASP B 344 1 10 HELIX 39 AE3 SER B 351 LEU B 357 1 7 HELIX 40 AE4 GLY B 366 MET B 370 5 5 HELIX 41 AE5 ARG B 379 GLY B 388 1 10 HELIX 42 AE6 HIS B 394 GLY B 401 5 8 HELIX 43 AE7 PHE B 404 VAL B 411 5 8 HELIX 44 AE8 ASN B 417 SER B 433 1 17 HELIX 45 AE9 LEU B 439 VAL B 442 5 4 HELIX 46 AF1 SER B 443 VAL B 453 1 11 HELIX 47 AF2 ASN B 468 THR B 472 5 5 SHEET 1 AA1 2 VAL A 151 GLN A 155 0 SHEET 2 AA1 2 ASN A 461 LYS A 466 1 O ASN A 461 N LEU A 152 SHEET 1 AA2 2 GLN A 159 VAL A 162 0 SHEET 2 AA2 2 LYS A 473 GLY A 476 1 O LYS A 473 N PHE A 160 SHEET 1 AA3 2 VAL B 151 GLN B 155 0 SHEET 2 AA3 2 ASN B 461 LYS B 466 1 O ASN B 461 N LEU B 152 SHEET 1 AA4 2 GLN B 159 VAL B 162 0 SHEET 2 AA4 2 LYS B 473 GLY B 476 1 O VAL B 475 N VAL B 162 CRYST1 46.078 104.286 70.538 90.00 92.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021702 0.000000 0.000901 0.00000 SCALE2 0.000000 0.009589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014189 0.00000