HEADER MEMBRANE PROTEIN/NUCLEAR PROTEIN 04-FEB-15 4XZR TITLE STRUCTURE OF YEAST IMPORTIN A BOUND TO THE MEMBRANE PROTEIN NUCLEAR TITLE 2 LOCALIZATION SIGNAL SEQUENCE OF INM PROTEIN HEH1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INNER NUCLEAR MEMBRANE PROTEIN SRC1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDEUS 170-223; COMPND 5 SYNONYM: HELIX-EXTENSION-HELIX DOMAIN-CONTAINING PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: IMPORTIN SUBUNIT ALPHA; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 88-509; COMPND 11 SYNONYM: KARYOPHERIN SUBUNIT ALPHA,KARYOPHERIN-60,SERINE-RICH RNA COMPND 12 POLYMERASE I SUPPRESSOR PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: SRC1, HEH1, YML034W, YML033W; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 12 S288C); SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: SRP1, KAP60, YNL189W, N1606; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KARYOPHERINS; NUCLEAR IMPORT; NLS; MEMBRANE PROTEINS, MEMBRANE KEYWDS 2 PROTEIN-NUCLEAR PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.K.LOKAREDDY,G.CINGOLANI REVDAT 5 28-FEB-24 4XZR 1 REMARK REVDAT 4 25-DEC-19 4XZR 1 REMARK REVDAT 3 20-SEP-17 4XZR 1 SOURCE KEYWDS JRNL REMARK REVDAT 2 15-JUL-15 4XZR 1 JRNL REVDAT 1 17-JUN-15 4XZR 0 JRNL AUTH R.K.LOKAREDDY,R.A.HAPSARI,M.VAN RHEENEN,R.A.PUMROY, JRNL AUTH 2 A.BHARDWAJ,A.STEEN,L.M.VEENHOFF,G.CINGOLANI JRNL TITL DISTINCTIVE PROPERTIES OF THE NUCLEAR LOCALIZATION SIGNALS JRNL TITL 2 OF INNER NUCLEAR MEMBRANE PROTEINS HEH1 AND HEH2. JRNL REF STRUCTURE V. 23 1305 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26051712 JRNL DOI 10.1016/J.STR.2015.04.017 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1696) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.780 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 25900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0105 - 4.6558 0.98 2835 151 0.1671 0.1778 REMARK 3 2 4.6558 - 3.6978 0.98 2770 148 0.1632 0.1760 REMARK 3 3 3.6978 - 3.2311 0.99 2784 150 0.2047 0.2383 REMARK 3 4 3.2311 - 2.9360 0.99 2790 144 0.2313 0.2470 REMARK 3 5 2.9360 - 2.7257 1.00 2790 147 0.2345 0.2919 REMARK 3 6 2.7257 - 2.5651 1.00 2811 152 0.2341 0.2363 REMARK 3 7 2.5651 - 2.4367 0.99 2763 142 0.2395 0.2806 REMARK 3 8 2.4367 - 2.3307 0.99 2778 141 0.2423 0.2644 REMARK 3 9 2.3307 - 2.2410 0.82 2285 119 0.2555 0.2779 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3502 REMARK 3 ANGLE : 0.792 4755 REMARK 3 CHIRALITY : 0.026 562 REMARK 3 PLANARITY : 0.004 616 REMARK 3 DIHEDRAL : 11.874 1326 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 173:176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.942 -19.478 14.570 REMARK 3 T TENSOR REMARK 3 T11: 0.8315 T22: 0.8409 REMARK 3 T33: 1.1729 T12: 0.2447 REMARK 3 T13: 0.1922 T23: -0.0937 REMARK 3 L TENSOR REMARK 3 L11: 4.3008 L22: 1.9220 REMARK 3 L33: 9.4418 L12: 2.3309 REMARK 3 L13: -6.3047 L23: -3.7794 REMARK 3 S TENSOR REMARK 3 S11: -0.4598 S12: 0.4817 S13: 0.1093 REMARK 3 S21: -0.3436 S22: -0.3780 S23: -0.1455 REMARK 3 S31: 0.1598 S32: -0.5636 S33: 0.8944 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 177:191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.640 -3.339 21.445 REMARK 3 T TENSOR REMARK 3 T11: 0.6897 T22: 0.9044 REMARK 3 T33: 0.6907 T12: 0.1033 REMARK 3 T13: 0.1561 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 5.7626 L22: 6.2564 REMARK 3 L33: 3.1620 L12: -5.9959 REMARK 3 L13: -2.2865 L23: 2.1789 REMARK 3 S TENSOR REMARK 3 S11: -0.0937 S12: -0.9145 S13: 0.5229 REMARK 3 S21: 1.1057 S22: 0.3886 S23: 0.0555 REMARK 3 S31: -0.4677 S32: -0.0625 S33: -0.1447 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 192:197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.404 19.513 23.358 REMARK 3 T TENSOR REMARK 3 T11: 0.7247 T22: 0.7081 REMARK 3 T33: 0.8707 T12: 0.1090 REMARK 3 T13: -0.1650 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 2.1494 L22: 8.9572 REMARK 3 L33: 8.1175 L12: 4.3216 REMARK 3 L13: 2.2266 L23: 3.2286 REMARK 3 S TENSOR REMARK 3 S11: -0.1812 S12: 0.4310 S13: 1.4978 REMARK 3 S21: 0.2985 S22: 0.0405 S23: 0.0871 REMARK 3 S31: -0.5271 S32: 0.1404 S33: 0.2806 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 87:251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.986 17.900 18.049 REMARK 3 T TENSOR REMARK 3 T11: 0.3712 T22: 0.4343 REMARK 3 T33: 0.3133 T12: 0.1043 REMARK 3 T13: -0.0181 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 4.5250 L22: 3.5056 REMARK 3 L33: 3.3837 L12: -0.6378 REMARK 3 L13: -0.9123 L23: 0.3461 REMARK 3 S TENSOR REMARK 3 S11: -0.1647 S12: -0.6437 S13: 0.2989 REMARK 3 S21: 0.4212 S22: 0.1972 S23: 0.1908 REMARK 3 S31: -0.2873 S32: -0.3416 S33: -0.0378 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 252:509 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.016 -12.005 18.368 REMARK 3 T TENSOR REMARK 3 T11: 0.3947 T22: 0.4365 REMARK 3 T33: 0.3781 T12: 0.0654 REMARK 3 T13: 0.0222 T23: 0.0868 REMARK 3 L TENSOR REMARK 3 L11: 4.1776 L22: 1.5309 REMARK 3 L33: 2.0089 L12: -1.3799 REMARK 3 L13: 1.2240 L23: -0.4019 REMARK 3 S TENSOR REMARK 3 S11: -0.1043 S12: -0.7191 S13: -0.5066 REMARK 3 S21: 0.1962 S22: 0.1534 S23: -0.0173 REMARK 3 S31: 0.3616 S32: 0.0617 S33: -0.0019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4XZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM AMMONIUM ACETATE, 20% PEG 8000, REMARK 280 100 MM BISTRIS, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.84100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.15300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.84100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.15300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 171 REMARK 465 ASP A 172 REMARK 465 SER A 183 REMARK 465 ASP A 184 REMARK 465 ASP A 185 REMARK 465 TRP A 186 REMARK 465 SER A 187 REMARK 465 GLU A 188 REMARK 465 ASN A 198 REMARK 465 LYS A 199 REMARK 465 HIS A 200 REMARK 465 LEU A 201 REMARK 465 ASN A 202 REMARK 465 LEU A 203 REMARK 465 LEU A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 ASP A 207 REMARK 465 SER A 208 REMARK 465 GLU A 209 REMARK 465 ILE A 210 REMARK 465 GLU A 211 REMARK 465 GLN A 212 REMARK 465 ASP A 213 REMARK 465 TYR A 214 REMARK 465 GLN A 215 REMARK 465 LYS A 216 REMARK 465 ALA A 217 REMARK 465 LYS A 218 REMARK 465 LYS A 219 REMARK 465 ARG A 220 REMARK 465 LYS A 221 REMARK 465 THR A 222 REMARK 465 SER A 223 REMARK 465 ASP A 224 REMARK 465 LEU A 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 173 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 120 CE2 TYR B 498 2666 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 176 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 LYS A 176 N - CA - C ANGL. DEV. = -23.3 DEGREES REMARK 500 PRO B 90 C - N - CD ANGL. DEV. = 13.8 DEGREES REMARK 500 PRO B 121 C - N - CD ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 175 -171.42 -174.00 REMARK 500 GLU B 88 -44.63 -135.13 REMARK 500 GLN B 91 10.54 52.92 REMARK 500 SER B 116 90.86 -69.45 REMARK 500 ARG B 120 48.74 73.60 REMARK 500 ASP B 251 109.48 -59.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 175 LYS A 176 45.94 REMARK 500 LEU B 89 PRO B 90 149.67 REMARK 500 GLU B 118 HIS B 119 145.87 REMARK 500 HIS B 119 ARG B 120 136.92 REMARK 500 ARG B 120 PRO B 121 -149.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 304 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH B 708 DISTANCE = 6.30 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PVZ RELATED DB: PDB DBREF 4XZR A 171 225 UNP Q03707 SRC1_YEAST 170 223 DBREF 4XZR B 88 509 UNP Q02821 IMA1_YEAST 88 509 SEQADV 4XZR ALA B 87 UNP Q02821 EXPRESSION TAG SEQRES 1 A 54 SER ASP THR ARG LYS LYS ARG LYS ASP PRO ASP SER ASP SEQRES 2 A 54 ASP TRP SER GLU SER ASN SER LYS GLU ASN LYS ILE ASP SEQRES 3 A 54 ASN LYS HIS LEU ASN LEU LEU SER SER ASP SER GLU ILE SEQRES 4 A 54 GLU GLN ASP TYR GLN LYS ALA LYS LYS ARG LYS THR SER SEQRES 5 A 54 ASP LEU SEQRES 1 B 423 ALA GLU LEU PRO GLN MET THR GLN GLN LEU ASN SER ASP SEQRES 2 B 423 ASP MET GLN GLU GLN LEU SER ALA THR VAL LYS PHE ARG SEQRES 3 B 423 GLN ILE LEU SER ARG GLU HIS ARG PRO PRO ILE ASP VAL SEQRES 4 B 423 VAL ILE GLN ALA GLY VAL VAL PRO ARG LEU VAL GLU PHE SEQRES 5 B 423 MET ARG GLU ASN GLN PRO GLU MET LEU GLN LEU GLU ALA SEQRES 6 B 423 ALA TRP ALA LEU THR ASN ILE ALA SER GLY THR SER ALA SEQRES 7 B 423 GLN THR LYS VAL VAL VAL ASP ALA ASP ALA VAL PRO LEU SEQRES 8 B 423 PHE ILE GLN LEU LEU TYR THR GLY SER VAL GLU VAL LYS SEQRES 9 B 423 GLU GLN ALA ILE TRP ALA LEU GLY ASN VAL ALA GLY ASP SEQRES 10 B 423 SER THR ASP TYR ARG ASP TYR VAL LEU GLN CYS ASN ALA SEQRES 11 B 423 MET GLU PRO ILE LEU GLY LEU PHE ASN SER ASN LYS PRO SEQRES 12 B 423 SER LEU ILE ARG THR ALA THR TRP THR LEU SER ASN LEU SEQRES 13 B 423 CYS ARG GLY LYS LYS PRO GLN PRO ASP TRP SER VAL VAL SEQRES 14 B 423 SER GLN ALA LEU PRO THR LEU ALA LYS LEU ILE TYR SER SEQRES 15 B 423 MET ASP THR GLU THR LEU VAL ASP ALA CYS TRP ALA ILE SEQRES 16 B 423 SER TYR LEU SER ASP GLY PRO GLN GLU ALA ILE GLN ALA SEQRES 17 B 423 VAL ILE ASP VAL ARG ILE PRO LYS ARG LEU VAL GLU LEU SEQRES 18 B 423 LEU SER HIS GLU SER THR LEU VAL GLN THR PRO ALA LEU SEQRES 19 B 423 ARG ALA VAL GLY ASN ILE VAL THR GLY ASN ASP LEU GLN SEQRES 20 B 423 THR GLN VAL VAL ILE ASN ALA GLY VAL LEU PRO ALA LEU SEQRES 21 B 423 ARG LEU LEU LEU SER SER PRO LYS GLU ASN ILE LYS LYS SEQRES 22 B 423 GLU ALA CYS TRP THR ILE SER ASN ILE THR ALA GLY ASN SEQRES 23 B 423 THR GLU GLN ILE GLN ALA VAL ILE ASP ALA ASN LEU ILE SEQRES 24 B 423 PRO PRO LEU VAL LYS LEU LEU GLU VAL ALA GLU TYR LYS SEQRES 25 B 423 THR LYS LYS GLU ALA CYS TRP ALA ILE SER ASN ALA SER SEQRES 26 B 423 SER GLY GLY LEU GLN ARG PRO ASP ILE ILE ARG TYR LEU SEQRES 27 B 423 VAL SER GLN GLY CYS ILE LYS PRO LEU CYS ASP LEU LEU SEQRES 28 B 423 GLU ILE ALA ASP ASN ARG ILE ILE GLU VAL THR LEU ASP SEQRES 29 B 423 ALA LEU GLU ASN ILE LEU LYS MET GLY GLU ALA ASP LYS SEQRES 30 B 423 GLU ALA ARG GLY LEU ASN ILE ASN GLU ASN ALA ASP PHE SEQRES 31 B 423 ILE GLU LYS ALA GLY GLY MET GLU LYS ILE PHE ASN CYS SEQRES 32 B 423 GLN GLN ASN GLU ASN ASP LYS ILE TYR GLU LYS ALA TYR SEQRES 33 B 423 LYS ILE ILE GLU THR TYR PHE FORMUL 3 HOH *113(H2 O) HELIX 1 AA1 ASP B 100 SER B 116 1 17 HELIX 2 AA2 PRO B 122 GLN B 128 1 7 HELIX 3 AA3 VAL B 131 PHE B 138 1 8 HELIX 4 AA4 PRO B 144 SER B 160 1 17 HELIX 5 AA5 THR B 162 ALA B 172 1 11 HELIX 6 AA6 ALA B 174 GLY B 185 1 12 HELIX 7 AA7 SER B 186 GLY B 202 1 17 HELIX 8 AA8 SER B 204 CYS B 214 1 11 HELIX 9 AA9 ALA B 216 PHE B 224 1 9 HELIX 10 AB1 LYS B 228 ARG B 244 1 17 HELIX 11 AB2 ASP B 251 SER B 256 1 6 HELIX 12 AB3 ALA B 258 ILE B 266 1 9 HELIX 13 AB4 ASP B 270 SER B 285 1 16 HELIX 14 AB5 PRO B 288 VAL B 298 1 11 HELIX 15 AB6 ARG B 299 LEU B 308 1 10 HELIX 16 AB7 SER B 312 VAL B 327 1 16 HELIX 17 AB8 ASN B 330 ALA B 340 1 11 HELIX 18 AB9 GLY B 341 LEU B 350 1 10 HELIX 19 AC1 LYS B 354 THR B 369 1 16 HELIX 20 AC2 ASN B 372 ALA B 382 1 11 HELIX 21 AC3 LEU B 384 ALA B 395 1 12 HELIX 22 AC4 GLU B 396 GLY B 413 1 18 HELIX 23 AC5 GLY B 414 GLN B 416 5 3 HELIX 24 AC6 ARG B 417 GLN B 427 1 11 HELIX 25 AC7 CYS B 429 LEU B 437 1 9 HELIX 26 AC8 ASP B 441 ARG B 466 1 26 HELIX 27 AC9 ASN B 471 ALA B 480 1 10 HELIX 28 AD1 GLY B 482 PHE B 487 1 6 HELIX 29 AD2 ILE B 497 PHE B 509 1 13 CISPEP 1 LYS B 247 PRO B 248 0 -0.67 CRYST1 129.682 58.306 95.372 90.00 129.32 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007711 0.000000 0.006317 0.00000 SCALE2 0.000000 0.017151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013554 0.00000