HEADER DNA BINDING PROTEIN/DNA 05-FEB-15 4Y00 TITLE CRYSTAL STRUCTURE OF HUMAN TDP-43 RRM1 DOMAIN WITH D169G MUTATION IN TITLE 2 COMPLEX WITH AN UNMODIFIED SINGLE-STRANDED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAR DNA-BINDING PROTEIN 43; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 101-191; COMPND 5 SYNONYM: TDP-43; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(P*TP*TP*GP*AP*GP*CP*GP*T)-3'); COMPND 10 CHAIN: E, F, G, H; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TARDBP, TDP43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS RNA RECOGNITION MOTIF 1 COMPLEX, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.H.CHIANG,P.H.KUO,W.Z.YANG,H.S.YUAN REVDAT 4 08-NOV-23 4Y00 1 REMARK REVDAT 3 04-OCT-17 4Y00 1 REMARK REVDAT 2 09-MAR-16 4Y00 1 JRNL REVDAT 1 10-FEB-16 4Y00 0 JRNL AUTH C.H.CHIANG,C.GRAUFFEL,L.S.WU,P.H.KUO,L.G.DOUDEVA,C.LIM, JRNL AUTH 2 C.K.SHEN,H.S.YUAN JRNL TITL STRUCTURAL ANALYSIS OF DISEASE-RELATED TDP-43 D169G JRNL TITL 2 MUTATION: LINKING ENHANCED STABILITY AND CASPASE CLEAVAGE JRNL TITL 3 EFFICIENCY TO PROTEIN ACCUMULATION JRNL REF SCI REP V. 6 21581 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26883171 JRNL DOI 10.1038/SREP21581 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 10669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.2729 - 5.9170 0.86 1252 140 0.2184 0.2466 REMARK 3 2 5.9170 - 4.7346 0.87 1195 135 0.2309 0.2522 REMARK 3 3 4.7346 - 4.1474 0.87 1196 125 0.2411 0.2579 REMARK 3 4 4.1474 - 3.7734 0.86 1172 131 0.2701 0.2726 REMARK 3 5 3.7734 - 3.5058 0.87 1178 129 0.3014 0.4099 REMARK 3 6 3.5058 - 3.3010 0.88 1201 127 0.3583 0.3768 REMARK 3 7 3.3010 - 3.1369 0.89 1182 127 0.3939 0.4465 REMARK 3 8 3.1369 - 3.0012 0.90 1224 137 0.4462 0.4893 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3120 REMARK 3 ANGLE : 0.618 4293 REMARK 3 CHIRALITY : 0.038 469 REMARK 3 PLANARITY : 0.002 450 REMARK 3 DIHEDRAL : 17.929 1179 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : OTHER REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10669 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 16.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 18.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50850 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4IUF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CH3COONH4, PH 5.0, 15% V/V REMARK 280 JEFFAMINE ED-2001, PH 7.0, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.58067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.29033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.29033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.58067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 89 REMARK 465 ARG A 90 REMARK 465 GLY A 91 REMARK 465 SER A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 GLY A 99 REMARK 465 SER A 100 REMARK 465 GLN A 101 REMARK 465 LYS A 102 REMARK 465 LYS A 181 REMARK 465 GLN A 182 REMARK 465 SER A 183 REMARK 465 GLN A 184 REMARK 465 ASP A 185 REMARK 465 GLU A 186 REMARK 465 PRO A 187 REMARK 465 LEU A 188 REMARK 465 ARG A 189 REMARK 465 SER A 190 REMARK 465 ARG A 191 REMARK 465 MET B 89 REMARK 465 ARG B 90 REMARK 465 GLY B 91 REMARK 465 SER B 92 REMARK 465 HIS B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 HIS B 96 REMARK 465 HIS B 97 REMARK 465 HIS B 98 REMARK 465 GLY B 99 REMARK 465 SER B 100 REMARK 465 GLN B 101 REMARK 465 LYS B 102 REMARK 465 LYS B 181 REMARK 465 GLN B 182 REMARK 465 SER B 183 REMARK 465 GLN B 184 REMARK 465 ASP B 185 REMARK 465 GLU B 186 REMARK 465 PRO B 187 REMARK 465 LEU B 188 REMARK 465 ARG B 189 REMARK 465 SER B 190 REMARK 465 ARG B 191 REMARK 465 MET C 89 REMARK 465 ARG C 90 REMARK 465 GLY C 91 REMARK 465 SER C 92 REMARK 465 HIS C 93 REMARK 465 HIS C 94 REMARK 465 HIS C 95 REMARK 465 HIS C 96 REMARK 465 HIS C 97 REMARK 465 HIS C 98 REMARK 465 GLY C 99 REMARK 465 SER C 100 REMARK 465 GLN C 101 REMARK 465 LYS C 102 REMARK 465 SER C 180 REMARK 465 LYS C 181 REMARK 465 GLN C 182 REMARK 465 SER C 183 REMARK 465 GLN C 184 REMARK 465 ASP C 185 REMARK 465 GLU C 186 REMARK 465 PRO C 187 REMARK 465 LEU C 188 REMARK 465 ARG C 189 REMARK 465 SER C 190 REMARK 465 ARG C 191 REMARK 465 MET D 89 REMARK 465 ARG D 90 REMARK 465 GLY D 91 REMARK 465 SER D 92 REMARK 465 HIS D 93 REMARK 465 HIS D 94 REMARK 465 HIS D 95 REMARK 465 HIS D 96 REMARK 465 HIS D 97 REMARK 465 HIS D 98 REMARK 465 GLY D 99 REMARK 465 SER D 100 REMARK 465 GLN D 101 REMARK 465 LYS D 102 REMARK 465 SER D 180 REMARK 465 LYS D 181 REMARK 465 GLN D 182 REMARK 465 SER D 183 REMARK 465 GLN D 184 REMARK 465 ASP D 185 REMARK 465 GLU D 186 REMARK 465 PRO D 187 REMARK 465 LEU D 188 REMARK 465 ARG D 189 REMARK 465 SER D 190 REMARK 465 ARG D 191 REMARK 465 DG E 1 REMARK 465 DT E 10 REMARK 465 DT F 10 REMARK 465 DG G 1 REMARK 465 DT G 2 REMARK 465 DT G 3 REMARK 465 DG G 8 REMARK 465 DT G 9 REMARK 465 DT G 10 REMARK 465 DG H 1 REMARK 465 DT H 2 REMARK 465 DT H 3 REMARK 465 DG H 4 REMARK 465 DA H 5 REMARK 465 DG H 6 REMARK 465 DT H 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT F 2 O2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 201 O HOH A 202 1.99 REMARK 500 O HOH B 205 O HOH B 206 2.00 REMARK 500 O ASP D 119 O HOH D 206 2.01 REMARK 500 O HOH A 205 O HOH E 101 2.03 REMARK 500 O LYS A 121 OG SER A 125 2.03 REMARK 500 OD1 ASP B 138 O HOH B 207 2.04 REMARK 500 O HOH B 203 O HOH B 204 2.05 REMARK 500 O GLY B 169 O HOH B 201 2.15 REMARK 500 OE1 GLU A 156 O HOH A 204 2.17 REMARK 500 O HOH B 201 O HOH B 203 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 144 O5' DG F 1 4469 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 6 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC H 7 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 139 12.18 -69.86 REMARK 500 PRO C 178 -167.44 -71.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y0F RELATED DB: PDB DBREF 4Y00 A 101 191 UNP Q13148 TADBP_HUMAN 101 191 DBREF 4Y00 B 101 191 UNP Q13148 TADBP_HUMAN 101 191 DBREF 4Y00 C 101 191 UNP Q13148 TADBP_HUMAN 101 191 DBREF 4Y00 D 101 191 UNP Q13148 TADBP_HUMAN 101 191 DBREF 4Y00 E 1 10 PDB 4Y00 4Y00 1 10 DBREF 4Y00 F 1 10 PDB 4Y00 4Y00 1 10 DBREF 4Y00 G 1 10 PDB 4Y00 4Y00 1 10 DBREF 4Y00 H 1 10 PDB 4Y00 4Y00 1 10 SEQADV 4Y00 MET A 89 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 ARG A 90 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY A 91 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 SER A 92 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS A 93 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS A 94 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS A 95 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS A 96 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS A 97 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS A 98 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY A 99 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 SER A 100 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY A 169 UNP Q13148 ASP 169 ENGINEERED MUTATION SEQADV 4Y00 MET B 89 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 ARG B 90 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY B 91 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 SER B 92 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS B 93 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS B 94 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS B 95 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS B 96 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS B 97 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS B 98 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY B 99 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 SER B 100 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY B 169 UNP Q13148 ASP 169 ENGINEERED MUTATION SEQADV 4Y00 MET C 89 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 ARG C 90 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY C 91 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 SER C 92 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS C 93 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS C 94 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS C 95 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS C 96 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS C 97 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS C 98 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY C 99 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 SER C 100 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY C 169 UNP Q13148 ASP 169 ENGINEERED MUTATION SEQADV 4Y00 MET D 89 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 ARG D 90 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY D 91 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 SER D 92 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS D 93 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS D 94 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS D 95 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS D 96 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS D 97 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 HIS D 98 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY D 99 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 SER D 100 UNP Q13148 EXPRESSION TAG SEQADV 4Y00 GLY D 169 UNP Q13148 ASP 169 ENGINEERED MUTATION SEQRES 1 A 103 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLN SEQRES 2 A 103 LYS THR SER ASP LEU ILE VAL LEU GLY LEU PRO TRP LYS SEQRES 3 A 103 THR THR GLU GLN ASP LEU LYS GLU TYR PHE SER THR PHE SEQRES 4 A 103 GLY GLU VAL LEU MET VAL GLN VAL LYS LYS ASP LEU LYS SEQRES 5 A 103 THR GLY HIS SER LYS GLY PHE GLY PHE VAL ARG PHE THR SEQRES 6 A 103 GLU TYR GLU THR GLN VAL LYS VAL MET SER GLN ARG HIS SEQRES 7 A 103 MET ILE GLY GLY ARG TRP CYS ASP CYS LYS LEU PRO ASN SEQRES 8 A 103 SER LYS GLN SER GLN ASP GLU PRO LEU ARG SER ARG SEQRES 1 B 103 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLN SEQRES 2 B 103 LYS THR SER ASP LEU ILE VAL LEU GLY LEU PRO TRP LYS SEQRES 3 B 103 THR THR GLU GLN ASP LEU LYS GLU TYR PHE SER THR PHE SEQRES 4 B 103 GLY GLU VAL LEU MET VAL GLN VAL LYS LYS ASP LEU LYS SEQRES 5 B 103 THR GLY HIS SER LYS GLY PHE GLY PHE VAL ARG PHE THR SEQRES 6 B 103 GLU TYR GLU THR GLN VAL LYS VAL MET SER GLN ARG HIS SEQRES 7 B 103 MET ILE GLY GLY ARG TRP CYS ASP CYS LYS LEU PRO ASN SEQRES 8 B 103 SER LYS GLN SER GLN ASP GLU PRO LEU ARG SER ARG SEQRES 1 C 103 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLN SEQRES 2 C 103 LYS THR SER ASP LEU ILE VAL LEU GLY LEU PRO TRP LYS SEQRES 3 C 103 THR THR GLU GLN ASP LEU LYS GLU TYR PHE SER THR PHE SEQRES 4 C 103 GLY GLU VAL LEU MET VAL GLN VAL LYS LYS ASP LEU LYS SEQRES 5 C 103 THR GLY HIS SER LYS GLY PHE GLY PHE VAL ARG PHE THR SEQRES 6 C 103 GLU TYR GLU THR GLN VAL LYS VAL MET SER GLN ARG HIS SEQRES 7 C 103 MET ILE GLY GLY ARG TRP CYS ASP CYS LYS LEU PRO ASN SEQRES 8 C 103 SER LYS GLN SER GLN ASP GLU PRO LEU ARG SER ARG SEQRES 1 D 103 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER GLN SEQRES 2 D 103 LYS THR SER ASP LEU ILE VAL LEU GLY LEU PRO TRP LYS SEQRES 3 D 103 THR THR GLU GLN ASP LEU LYS GLU TYR PHE SER THR PHE SEQRES 4 D 103 GLY GLU VAL LEU MET VAL GLN VAL LYS LYS ASP LEU LYS SEQRES 5 D 103 THR GLY HIS SER LYS GLY PHE GLY PHE VAL ARG PHE THR SEQRES 6 D 103 GLU TYR GLU THR GLN VAL LYS VAL MET SER GLN ARG HIS SEQRES 7 D 103 MET ILE GLY GLY ARG TRP CYS ASP CYS LYS LEU PRO ASN SEQRES 8 D 103 SER LYS GLN SER GLN ASP GLU PRO LEU ARG SER ARG SEQRES 1 E 10 DG DT DT DG DA DG DC DG DT DT SEQRES 1 F 10 DG DT DT DG DA DG DC DG DT DT SEQRES 1 G 10 DG DT DT DG DA DG DC DG DT DT SEQRES 1 H 10 DG DT DT DG DA DG DC DG DT DT FORMUL 9 HOH *24(H2 O) HELIX 1 AA1 THR A 116 SER A 125 1 10 HELIX 2 AA2 GLU A 154 SER A 163 1 10 HELIX 3 AA3 THR B 116 SER B 125 1 10 HELIX 4 AA4 GLU B 154 GLN B 164 1 11 HELIX 5 AA5 THR C 116 SER C 125 1 10 HELIX 6 AA6 GLU C 154 MET C 162 1 9 HELIX 7 AA7 THR D 116 SER D 125 1 10 HELIX 8 AA8 GLU D 154 SER D 163 1 10 SHEET 1 AA1 5 VAL A 130 LYS A 137 0 SHEET 2 AA1 5 SER A 144 PHE A 152 -1 O LYS A 145 N LYS A 136 SHEET 3 AA1 5 LEU A 106 LEU A 109 -1 N LEU A 106 O VAL A 150 SHEET 4 AA1 5 ARG A 171 LYS A 176 -1 O LYS A 176 N ILE A 107 SHEET 5 AA1 5 ARG A 165 ILE A 168 -1 N HIS A 166 O CYS A 173 SHEET 1 AA2 5 VAL B 130 LYS B 137 0 SHEET 2 AA2 5 SER B 144 PHE B 152 -1 O ARG B 151 N MET B 132 SHEET 3 AA2 5 ASP B 105 LEU B 109 -1 N VAL B 108 O GLY B 148 SHEET 4 AA2 5 ARG B 171 LYS B 176 -1 O LYS B 176 N ILE B 107 SHEET 5 AA2 5 HIS B 166 ILE B 168 -1 N ILE B 168 O ARG B 171 SHEET 1 AA3 5 VAL C 130 LYS C 137 0 SHEET 2 AA3 5 SER C 144 PHE C 152 -1 O ARG C 151 N LEU C 131 SHEET 3 AA3 5 LEU C 106 LEU C 109 -1 N VAL C 108 O GLY C 148 SHEET 4 AA3 5 ARG C 171 LYS C 176 -1 O LYS C 176 N ILE C 107 SHEET 5 AA3 5 ARG C 165 ILE C 168 -1 N HIS C 166 O CYS C 173 SHEET 1 AA4 5 VAL D 130 LYS D 137 0 SHEET 2 AA4 5 SER D 144 PHE D 152 -1 O ARG D 151 N MET D 132 SHEET 3 AA4 5 ASP D 105 LEU D 109 -1 N LEU D 106 O VAL D 150 SHEET 4 AA4 5 TRP D 172 LYS D 176 -1 O ASP D 174 N LEU D 109 SHEET 5 AA4 5 ARG D 165 MET D 167 -1 N HIS D 166 O CYS D 173 CRYST1 97.636 97.636 96.871 90.00 90.00 120.00 P 32 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010242 0.005913 0.000000 0.00000 SCALE2 0.000000 0.011827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010323 0.00000