HEADER TRANSFERASE/TRANSFERASE INHIBITOR 05-FEB-15 4Y0A TITLE SHIKIMATE KINASE FROM ACINETOBACTER BAUMANNII IN COMPLEX WITH TITLE 2 SHIKIMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SK; COMPND 5 EC: 2.7.1.71; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 557600; SOURCE 4 STRAIN: AB307-0294; SOURCE 5 GENE: AROK, ABBFA_000324; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO KEYWDS SHIKIMATE PATHWAY, TRANSFERASE, NUCLEOSIDE MONOPHOSPHATE (NMP) KINASE KEYWDS 2 FAMILY, AMINO ACID BIOSYNTHESIS, ATP-BINDING, KINASE, NUCLEOTIDE KEYWDS 3 BINDING, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.A.SUTTON,J.BREEN,U.MACDONALD,J.M.BEANAN,R.OLSON,T.A.RUSSO, AUTHOR 2 L.W.SCHULTZ,T.C.UMLAND REVDAT 5 27-SEP-23 4Y0A 1 REMARK REVDAT 4 27-NOV-19 4Y0A 1 REMARK REVDAT 3 10-APR-19 4Y0A 1 REMARK REVDAT 2 07-OCT-15 4Y0A 1 REMARK REVDAT 1 12-AUG-15 4Y0A 0 JRNL AUTH K.A.SUTTON,J.BREEN,U.MACDONALD,J.M.BEANAN,R.OLSON,T.A.RUSSO, JRNL AUTH 2 L.W.SCHULTZ,T.C.UMLAND JRNL TITL STRUCTURE OF SHIKIMATE KINASE, AN IN VIVO ESSENTIAL JRNL TITL 2 METABOLIC ENZYME IN THE NOSOCOMIAL PATHOGEN ACINETOBACTER JRNL TITL 3 BAUMANNII, IN COMPLEX WITH SHIKIMATE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1736 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26249354 JRNL DOI 10.1107/S139900471501189X REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 30524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0268 - 4.2479 0.98 2799 136 0.1975 0.2378 REMARK 3 2 4.2479 - 3.3725 0.99 2709 140 0.1817 0.2373 REMARK 3 3 3.3725 - 2.9464 0.99 2675 142 0.2025 0.2350 REMARK 3 4 2.9464 - 2.6771 0.99 2647 139 0.1970 0.2345 REMARK 3 5 2.6771 - 2.4853 0.98 2607 142 0.1757 0.2350 REMARK 3 6 2.4853 - 2.3388 0.98 2630 141 0.1779 0.2227 REMARK 3 7 2.3388 - 2.2217 0.98 2605 138 0.1766 0.2171 REMARK 3 8 2.2217 - 2.1250 0.98 2613 131 0.1741 0.2099 REMARK 3 9 2.1250 - 2.0432 0.98 2567 147 0.1876 0.2388 REMARK 3 10 2.0432 - 1.9727 0.97 2606 134 0.2152 0.2455 REMARK 3 11 1.9727 - 1.9110 0.96 2559 117 0.2532 0.3035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 1484 REMARK 3 ANGLE : 1.658 2008 REMARK 3 CHIRALITY : 0.083 229 REMARK 3 PLANARITY : 0.009 256 REMARK 3 DIHEDRAL : 15.399 571 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3427 11.7403 8.9187 REMARK 3 T TENSOR REMARK 3 T11: 0.3564 T22: 0.3141 REMARK 3 T33: 0.3303 T12: 0.0077 REMARK 3 T13: -0.0679 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.4244 L22: 2.6858 REMARK 3 L33: 1.4329 L12: 0.9177 REMARK 3 L13: 1.4799 L23: 0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.1628 S13: 0.1291 REMARK 3 S21: -0.2342 S22: 0.0265 S23: 0.4326 REMARK 3 S31: -0.0900 S32: -0.1878 S33: 0.0205 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1119 14.4700 23.4128 REMARK 3 T TENSOR REMARK 3 T11: 0.3933 T22: 0.2943 REMARK 3 T33: 0.2621 T12: 0.0111 REMARK 3 T13: -0.0213 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 7.9535 L22: 4.2239 REMARK 3 L33: 5.8120 L12: 2.3609 REMARK 3 L13: 6.0175 L23: 1.6318 REMARK 3 S TENSOR REMARK 3 S11: -0.1118 S12: -0.4414 S13: 0.2614 REMARK 3 S21: 0.6040 S22: -0.2394 S23: 0.2328 REMARK 3 S31: -0.6281 S32: -0.7761 S33: 0.2828 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7747 7.3046 27.0732 REMARK 3 T TENSOR REMARK 3 T11: 0.2942 T22: 0.2665 REMARK 3 T33: 0.2426 T12: -0.0298 REMARK 3 T13: -0.0006 T23: 0.0586 REMARK 3 L TENSOR REMARK 3 L11: 7.8622 L22: 5.9975 REMARK 3 L33: 8.0367 L12: 1.5669 REMARK 3 L13: 4.3251 L23: -1.0640 REMARK 3 S TENSOR REMARK 3 S11: 0.1225 S12: -0.4240 S13: -0.0414 REMARK 3 S21: 0.6222 S22: -0.0178 S23: 0.0132 REMARK 3 S31: -0.3108 S32: 0.0514 S33: -0.0862 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5600 1.8182 17.0272 REMARK 3 T TENSOR REMARK 3 T11: 0.3124 T22: 0.2757 REMARK 3 T33: 0.3107 T12: -0.0543 REMARK 3 T13: -0.0706 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 7.7080 L22: 4.5323 REMARK 3 L33: 2.3399 L12: -1.8720 REMARK 3 L13: 2.1316 L23: -2.7445 REMARK 3 S TENSOR REMARK 3 S11: 0.1276 S12: -0.4050 S13: -0.6410 REMARK 3 S21: -0.2463 S22: 0.1508 S23: 0.5308 REMARK 3 S31: 0.3074 S32: -0.2822 S33: -0.2031 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4102 9.1271 6.8779 REMARK 3 T TENSOR REMARK 3 T11: 0.3780 T22: 0.2537 REMARK 3 T33: 0.2010 T12: 0.0406 REMARK 3 T13: 0.0174 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 4.7723 L22: 6.1893 REMARK 3 L33: 1.8112 L12: 3.5277 REMARK 3 L13: 0.7438 L23: -0.4651 REMARK 3 S TENSOR REMARK 3 S11: -0.4182 S12: 0.3755 S13: 0.0376 REMARK 3 S21: -1.1496 S22: 0.3146 S23: -0.0581 REMARK 3 S31: 0.0316 S32: 0.2671 S33: 0.1306 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5241 16.6249 17.6357 REMARK 3 T TENSOR REMARK 3 T11: 0.3270 T22: 0.4652 REMARK 3 T33: 0.4619 T12: -0.0420 REMARK 3 T13: -0.0301 T23: 0.0716 REMARK 3 L TENSOR REMARK 3 L11: 0.5377 L22: 7.5245 REMARK 3 L33: 8.3860 L12: -0.1615 REMARK 3 L13: -0.1060 L23: -1.9712 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: -0.5418 S13: -0.0220 REMARK 3 S21: 0.3408 S22: -0.0694 S23: -0.4103 REMARK 3 S31: -0.2992 S32: 0.3315 S33: 0.0409 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0966 2.8940 10.4252 REMARK 3 T TENSOR REMARK 3 T11: 0.4216 T22: 0.3763 REMARK 3 T33: 0.4210 T12: 0.1337 REMARK 3 T13: 0.0690 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 3.9680 L22: 8.6415 REMARK 3 L33: 5.1250 L12: 2.7007 REMARK 3 L13: 2.1177 L23: 1.9085 REMARK 3 S TENSOR REMARK 3 S11: 0.1140 S12: -0.0011 S13: -0.7645 REMARK 3 S21: -0.3541 S22: -0.1189 S23: -0.9997 REMARK 3 S31: 0.6223 S32: 0.5363 S33: -0.0215 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9020 7.8701 1.2335 REMARK 3 T TENSOR REMARK 3 T11: 0.7973 T22: 0.4481 REMARK 3 T33: 0.4055 T12: -0.0399 REMARK 3 T13: 0.0306 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 9.0495 L22: 4.0446 REMARK 3 L33: 6.6745 L12: 5.1588 REMARK 3 L13: -0.8791 L23: -1.7209 REMARK 3 S TENSOR REMARK 3 S11: -0.3390 S12: 1.3554 S13: -0.2063 REMARK 3 S21: -1.3212 S22: 0.6031 S23: -0.6458 REMARK 3 S31: -0.2767 S32: 0.1443 S33: -0.1712 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5682 8.6676 -1.2347 REMARK 3 T TENSOR REMARK 3 T11: 0.5196 T22: 0.4119 REMARK 3 T33: 0.3867 T12: 0.0595 REMARK 3 T13: -0.1275 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 9.2402 L22: 6.0288 REMARK 3 L33: 5.2060 L12: 5.0755 REMARK 3 L13: 4.5171 L23: 3.7944 REMARK 3 S TENSOR REMARK 3 S11: -0.1121 S12: 0.6336 S13: -0.4783 REMARK 3 S21: -0.6800 S22: 0.2314 S23: 0.2975 REMARK 3 S31: 0.1946 S32: 0.2905 S33: -0.1318 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30525 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.911 REMARK 200 RESOLUTION RANGE LOW (A) : 36.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : 0.43600 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1KAG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 1.5M LITHIUM SULFATE, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.99000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.36000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.36000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.99000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.99000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.90500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.36000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.90500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.99000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 364 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 434 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 163 O HOH A 302 1.42 REMARK 500 OG1 THR A 167 O HOH A 301 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 12 36.77 -94.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 459 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 460 DISTANCE = 6.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SKM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 DBREF 4Y0A A 11 189 UNP B7GVP4 B7GVP4_ACIB3 11 189 SEQRES 1 A 179 PRO SER LYS ALA PHE GLU THR LEU PRO ASN ILE TYR LEU SEQRES 2 A 179 VAL GLY PRO MET GLY ALA GLY LYS THR THR VAL GLY ARG SEQRES 3 A 179 HIS LEU ALA GLU LEU LEU GLY ARG GLU PHE LEU ASP SER SEQRES 4 A 179 ASP HIS GLU ILE GLU ARG LYS THR GLY ALA THR ILE PRO SEQRES 5 A 179 TRP ILE PHE GLU LYS GLU GLY GLU VAL GLY PHE ARG THR SEQRES 6 A 179 ARG GLU THR VAL VAL LEU ASN GLU LEU THR SER ARG LYS SEQRES 7 A 179 ALA LEU VAL LEU ALA THR GLY GLY GLY ALA ILE THR GLN SEQRES 8 A 179 ALA PRO ASN ARG GLU PHE LEU LYS GLN ARG GLY ILE VAL SEQRES 9 A 179 VAL TYR LEU TYR THR PRO VAL GLU LEU GLN LEU GLN ARG SEQRES 10 A 179 THR TYR ARG ASP LYS ASN ARG PRO LEU LEU GLN VAL GLU SEQRES 11 A 179 ASN PRO GLU GLN LYS LEU ARG ASP LEU LEU LYS ILE ARG SEQRES 12 A 179 ASP PRO LEU TYR ARG GLU VAL ALA HIS TYR THR ILE GLU SEQRES 13 A 179 THR ASN GLN GLY ALA ALA ARG ASP LEU ALA GLN LYS ILE SEQRES 14 A 179 LEU GLN LEU ILE LEU SER ASN LYS LEU LYS HET SKM A 201 21 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HETNAM SKM (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC HETNAM 2 SKM ACID HETNAM SO4 SULFATE ION HETSYN SKM SHIKIMATE FORMUL 2 SKM C7 H10 O5 FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *160(H2 O) HELIX 1 AA1 SER A 12 GLU A 16 5 5 HELIX 2 AA2 GLY A 30 GLY A 43 1 14 HELIX 3 AA3 SER A 49 GLY A 58 1 10 HELIX 4 AA4 THR A 60 THR A 85 1 26 HELIX 5 AA5 GLY A 97 THR A 100 5 4 HELIX 6 AA6 GLN A 101 GLY A 112 1 12 HELIX 7 AA7 PRO A 120 THR A 128 1 9 HELIX 8 AA8 ARG A 134 GLN A 138 5 5 HELIX 9 AA9 ASN A 141 ALA A 161 1 21 HELIX 10 AB1 ALA A 171 LYS A 189 1 19 SHEET 1 AA1 5 GLU A 45 ASP A 48 0 SHEET 2 AA1 5 LEU A 90 ALA A 93 1 O ALA A 93 N LEU A 47 SHEET 3 AA1 5 ILE A 21 VAL A 24 1 N ILE A 21 O LEU A 92 SHEET 4 AA1 5 ILE A 113 TYR A 118 1 O VAL A 115 N TYR A 22 SHEET 5 AA1 5 TYR A 163 GLU A 166 1 O ILE A 165 N TYR A 116 SITE 1 AC1 14 MET A 27 ASP A 50 PHE A 73 ARG A 74 SITE 2 AC1 14 GLY A 96 GLY A 97 PRO A 135 LEU A 136 SITE 3 AC1 14 ARG A 153 HOH A 337 HOH A 350 HOH A 352 SITE 4 AC1 14 HOH A 355 HOH A 361 SITE 1 AC2 6 PRO A 120 VAL A 121 GLU A 122 ARG A 147 SITE 2 AC2 6 HOH A 307 HOH A 343 SITE 1 AC3 10 PRO A 26 GLY A 28 ALA A 29 GLY A 30 SITE 2 AC3 10 LYS A 31 THR A 32 ARG A 134 HOH A 311 SITE 3 AC3 10 HOH A 338 HOH A 368 SITE 1 AC4 10 HIS A 37 ARG A 127 GLN A 169 GLY A 170 SITE 2 AC4 10 ALA A 171 ALA A 172 ARG A 173 HOH A 364 SITE 3 AC4 10 HOH A 376 HOH A 410 CRYST1 81.980 85.810 112.720 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012198 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008872 0.00000