HEADER PROTEIN BINDING 06-FEB-15 4Y0G TITLE BETA2 CARBOHYDRATE BINDING MODULE (CBM) OF AMP-ACTIVATED PROTEIN TITLE 2 KINASE (AMPK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 74-155; COMPND 5 SYNONYM: AMPK SUBUNIT BETA-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PRKAB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CARBOHYDRATE BINDING MODULE, AMPK, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.MOBBS,M.A.GORMAN,M.W.PARKER,P.R.GOOLEY,M.GRIFFIN REVDAT 3 28-FEB-24 4Y0G 1 SOURCE KEYWDS JRNL REMARK REVDAT 2 03-JUN-15 4Y0G 1 JRNL REVDAT 1 08-APR-15 4Y0G 0 JRNL AUTH J.I.MOBBS,A.KOAY,A.DI PAOLO,M.BIERI,E.J.PETRIE,M.A.GORMAN, JRNL AUTH 2 L.DOUGHTY,M.W.PARKER,D.I.STAPLETON,M.D.GRIFFIN,P.R.GOOLEY JRNL TITL DETERMINANTS OF OLIGOSACCHARIDE SPECIFICITY OF THE JRNL TITL 2 CARBOHYDRATE-BINDING MODULES OF AMP-ACTIVATED PROTEIN JRNL TITL 3 KINASE. JRNL REF BIOCHEM.J. V. 468 245 2015 JRNL REFN ESSN 1470-8728 JRNL PMID 25774984 JRNL DOI 10.1042/BJ20150270 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 22035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1184 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1545 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1332 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.988 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1425 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1335 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1929 ; 1.889 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3081 ; 0.846 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 168 ; 7.070 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;30.049 ;24.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 220 ;11.944 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;27.633 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 213 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1574 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 334 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 666 ; 1.277 ; 1.001 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 665 ; 1.276 ; 1.001 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 830 ; 2.096 ; 1.496 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 831 ; 2.095 ; 1.497 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 759 ; 2.274 ; 1.393 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 759 ; 2.219 ; 1.394 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1098 ; 3.470 ; 1.923 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1781 ; 7.766 ;11.708 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1599 ; 7.328 ; 9.561 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 65.8830 -18.5467 66.9303 REMARK 3 T TENSOR REMARK 3 T11: 0.0161 T22: 0.0248 REMARK 3 T33: 0.0283 T12: 0.0024 REMARK 3 T13: -0.0083 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.0580 L22: 0.1913 REMARK 3 L33: 0.8439 L12: -0.0276 REMARK 3 L13: -0.3020 L23: -0.1529 REMARK 3 S TENSOR REMARK 3 S11: -0.0840 S12: -0.0633 S13: -0.0423 REMARK 3 S21: -0.0264 S22: -0.0046 S23: 0.0280 REMARK 3 S31: -0.0066 S32: 0.0772 S33: 0.0886 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 156 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7111 -11.6276 76.5826 REMARK 3 T TENSOR REMARK 3 T11: 0.0098 T22: 0.0294 REMARK 3 T33: 0.0206 T12: 0.0045 REMARK 3 T13: 0.0073 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.5729 L22: 0.1430 REMARK 3 L33: 1.5609 L12: -0.4554 REMARK 3 L13: -0.2484 L23: -0.0541 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.1328 S13: -0.0383 REMARK 3 S21: 0.0090 S22: 0.0473 S23: 0.0112 REMARK 3 S31: -0.0842 S32: -0.0576 S33: -0.0370 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Y0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23221 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULPHATE, 15% V/V REMARK 280 GLYCEROL AND 25.5 % W/V PEG4000, PH 7, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 281.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.48650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 13.81350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.48650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 13.81350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 349 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 67 REMARK 465 PRO A 68 REMARK 465 LEU A 69 REMARK 465 GLY A 70 REMARK 465 SER A 71 REMARK 465 PRO A 72 REMARK 465 ASN A 73 REMARK 465 SER A 74 REMARK 465 GLY B 67 REMARK 465 PRO B 68 REMARK 465 LEU B 69 REMARK 465 GLY B 70 REMARK 465 SER B 71 REMARK 465 PRO B 72 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 431 O HOH A 462 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 136 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 77 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 109 -120.35 54.53 REMARK 500 HIS B 109 -111.88 56.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 DBREF 4Y0G A 75 156 UNP Q9QZH4 AAKB2_RAT 74 155 DBREF 4Y0G B 75 156 UNP Q9QZH4 AAKB2_RAT 74 155 SEQADV 4Y0G GLY A 67 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G PRO A 68 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G LEU A 69 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G GLY A 70 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G SER A 71 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G PRO A 72 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G ASN A 73 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G SER A 74 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G GLY B 67 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G PRO B 68 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G LEU B 69 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G GLY B 70 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G SER B 71 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G PRO B 72 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G ASN B 73 UNP Q9QZH4 EXPRESSION TAG SEQADV 4Y0G SER B 74 UNP Q9QZH4 EXPRESSION TAG SEQRES 1 A 90 GLY PRO LEU GLY SER PRO ASN SER GLN ALA ARG PRO THR SEQRES 2 A 90 VAL ILE ARG TRP SER GLU GLY GLY LYS GLU VAL PHE ILE SEQRES 3 A 90 SER GLY SER PHE ASN ASN TRP SER THR LYS ILE PRO LEU SEQRES 4 A 90 ILE LYS SER HIS ASN ASP PHE VAL ALA ILE LEU ASP LEU SEQRES 5 A 90 PRO GLU GLY GLU HIS GLN TYR LYS PHE PHE VAL ASP GLY SEQRES 6 A 90 GLN TRP VAL HIS ASP PRO SER GLU PRO VAL VAL THR SER SEQRES 7 A 90 GLN LEU GLY THR ILE ASN ASN LEU ILE HIS VAL LYS SEQRES 1 B 90 GLY PRO LEU GLY SER PRO ASN SER GLN ALA ARG PRO THR SEQRES 2 B 90 VAL ILE ARG TRP SER GLU GLY GLY LYS GLU VAL PHE ILE SEQRES 3 B 90 SER GLY SER PHE ASN ASN TRP SER THR LYS ILE PRO LEU SEQRES 4 B 90 ILE LYS SER HIS ASN ASP PHE VAL ALA ILE LEU ASP LEU SEQRES 5 B 90 PRO GLU GLY GLU HIS GLN TYR LYS PHE PHE VAL ASP GLY SEQRES 6 B 90 GLN TRP VAL HIS ASP PRO SER GLU PRO VAL VAL THR SER SEQRES 7 B 90 GLN LEU GLY THR ILE ASN ASN LEU ILE HIS VAL LYS HET GOL A 201 6 HET GOL A 202 6 HET GOL A 203 6 HET GOL A 204 6 HET GOL A 205 6 HET GOL A 206 6 HET GOL B 201 6 HET GOL B 202 6 HET GOL B 203 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 9(C3 H8 O3) FORMUL 12 HOH *301(H2 O) HELIX 1 AA1 PHE A 96 ASN A 98 5 3 HELIX 2 AA2 PHE B 96 ASN B 98 5 3 SHEET 1 AA1 3 ARG A 77 TRP A 83 0 SHEET 2 AA1 3 ASP A 111 LEU A 118 -1 O ALA A 114 N ILE A 81 SHEET 3 AA1 3 ILE A 106 SER A 108 -1 N ILE A 106 O VAL A 113 SHEET 1 AA2 4 ILE A 103 PRO A 104 0 SHEET 2 AA2 4 VAL A 90 GLY A 94 -1 N ILE A 92 O ILE A 103 SHEET 3 AA2 4 GLY A 121 VAL A 129 -1 O PHE A 128 N PHE A 91 SHEET 4 AA2 4 GLN A 132 VAL A 134 -1 O GLN A 132 N VAL A 129 SHEET 1 AA3 5 ILE A 103 PRO A 104 0 SHEET 2 AA3 5 VAL A 90 GLY A 94 -1 N ILE A 92 O ILE A 103 SHEET 3 AA3 5 GLY A 121 VAL A 129 -1 O PHE A 128 N PHE A 91 SHEET 4 AA3 5 ILE A 149 VAL A 155 -1 O VAL A 155 N GLY A 121 SHEET 5 AA3 5 VAL A 141 THR A 143 -1 N VAL A 142 O ASN A 150 SHEET 1 AA4 6 ARG B 77 TRP B 83 0 SHEET 2 AA4 6 ASP B 111 LEU B 118 -1 O ALA B 114 N ILE B 81 SHEET 3 AA4 6 ILE B 103 SER B 108 -1 N SER B 108 O ASP B 111 SHEET 4 AA4 6 VAL B 90 GLY B 94 -1 N ILE B 92 O ILE B 103 SHEET 5 AA4 6 GLY B 121 VAL B 129 -1 O PHE B 128 N PHE B 91 SHEET 6 AA4 6 GLN B 132 VAL B 134 -1 O GLN B 132 N VAL B 129 SHEET 1 AA5 7 ARG B 77 TRP B 83 0 SHEET 2 AA5 7 ASP B 111 LEU B 118 -1 O ALA B 114 N ILE B 81 SHEET 3 AA5 7 ILE B 103 SER B 108 -1 N SER B 108 O ASP B 111 SHEET 4 AA5 7 VAL B 90 GLY B 94 -1 N ILE B 92 O ILE B 103 SHEET 5 AA5 7 GLY B 121 VAL B 129 -1 O PHE B 128 N PHE B 91 SHEET 6 AA5 7 ILE B 149 VAL B 155 -1 O VAL B 155 N GLY B 121 SHEET 7 AA5 7 VAL B 141 THR B 143 -1 N VAL B 142 O ASN B 150 SITE 1 AC1 9 VAL A 80 ILE A 81 ARG A 82 HIS A 109 SITE 2 AC1 9 GLU A 139 HOH A 309 HOH A 310 HOH A 312 SITE 3 AC1 9 HOH A 381 SITE 1 AC2 8 ILE A 103 PRO A 104 ALA A 114 ILE A 115 SITE 2 AC2 8 LEU A 116 HOH A 316 HOH A 387 HOH A 405 SITE 1 AC3 4 LEU A 116 ASP A 117 HOH A 307 HOH A 387 SITE 1 AC4 5 SER A 93 TRP A 99 SER A 100 LYS A 102 SITE 2 AC4 5 HOH A 449 SITE 1 AC5 6 GLY A 121 GLU A 122 HOH A 314 HOH A 336 SITE 2 AC5 6 HOH A 348 HOH A 426 SITE 1 AC6 3 VAL A 134 HIS A 135 HOH A 447 SITE 1 AC7 4 SER B 93 TRP B 99 TRP B 133 HOH B 436 SITE 1 AC8 5 PHE B 96 ASN B 97 LEU B 116 ASP B 117 SITE 2 AC8 5 HOH B 406 SITE 1 AC9 2 LYS B 102 PHE B 128 CRYST1 112.973 27.627 78.882 90.00 133.88 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008852 0.000000 0.008511 0.00000 SCALE2 0.000000 0.036196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017587 0.00000