HEADER SIGNALING PROTEIN 06-FEB-15 4Y0V TITLE STRUCTURE OF AN ADP RIBOSYLATION FACTOR FROM ENTAMOEBA HISTOLYTICA HM- TITLE 2 1:IMSS BOUND TO MG-GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADP-RIBOSYLATION FACTOR,PUTATIVE,SMALL GTPASE ARFA1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA; SOURCE 3 ORGANISM_TAXID: 5759; SOURCE 4 GENE: EHI_073470, EHI_137720; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALING PROTEIN, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 2 CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 8 27-SEP-23 4Y0V 1 LINK REVDAT 7 11-DEC-19 4Y0V 1 REMARK REVDAT 6 22-NOV-17 4Y0V 1 REMARK REVDAT 5 06-SEP-17 4Y0V 1 SOURCE REMARK REVDAT 4 20-MAY-15 4Y0V 1 JRNL REVDAT 3 13-MAY-15 4Y0V 1 JRNL REVDAT 2 06-MAY-15 4Y0V 1 JRNL REVDAT 1 04-MAR-15 4Y0V 0 SPRSDE 04-MAR-15 4Y0V 3RD1 JRNL AUTH D.A.SERBZHINSKIY,M.C.CLIFTON,B.SANKARAN,B.L.STAKER, JRNL AUTH 2 T.E.EDWARDS,P.J.MYLER JRNL TITL STRUCTURE OF AN ADP-RIBOSYLATION FACTOR, ARF1, FROM JRNL TITL 2 ENTAMOEBA HISTOLYTICA BOUND TO MG(2+)-GDP. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 594 2015 JRNL REFN ESSN 2053-230X JRNL PMID 25945714 JRNL DOI 10.1107/S2053230X15004677 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1932) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 34061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7299 - 4.1094 0.99 2959 182 0.1587 0.1928 REMARK 3 2 4.1094 - 3.2665 0.96 2779 156 0.1663 0.2061 REMARK 3 3 3.2665 - 2.8550 0.99 2871 163 0.1839 0.2086 REMARK 3 4 2.8550 - 2.5946 0.97 2779 159 0.2013 0.2528 REMARK 3 5 2.5946 - 2.4090 0.99 2862 133 0.1989 0.2766 REMARK 3 6 2.4090 - 2.2672 0.93 2676 149 0.2420 0.3082 REMARK 3 7 2.2672 - 2.1538 0.88 2571 111 0.3338 0.4525 REMARK 3 8 2.1538 - 2.0601 0.91 2629 135 0.3184 0.3808 REMARK 3 9 2.0601 - 1.9809 0.93 2681 132 0.2706 0.3374 REMARK 3 10 1.9809 - 1.9126 0.85 2414 133 0.4196 0.4873 REMARK 3 11 1.9126 - 1.8528 0.82 2337 115 0.3739 0.4770 REMARK 3 12 1.8528 - 1.8000 0.97 2801 134 0.2303 0.3002 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2649 REMARK 3 ANGLE : 1.127 3619 REMARK 3 CHIRALITY : 0.052 430 REMARK 3 PLANARITY : 0.004 445 REMARK 3 DIHEDRAL : 14.374 967 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.853 11.365 4.169 REMARK 3 T TENSOR REMARK 3 T11: 0.5081 T22: 0.5899 REMARK 3 T33: -0.0025 T12: -0.0907 REMARK 3 T13: 0.0881 T23: -0.0963 REMARK 3 L TENSOR REMARK 3 L11: 0.0945 L22: 1.0199 REMARK 3 L33: 0.0614 L12: 0.0627 REMARK 3 L13: 0.0070 L23: -0.2349 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: 0.0610 S13: 0.0298 REMARK 3 S21: -0.1384 S22: 0.0438 S23: -0.0322 REMARK 3 S31: -0.4135 S32: -0.1455 S33: -0.0503 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 14:33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.234 12.870 18.597 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.1337 REMARK 3 T33: 0.0407 T12: -0.0634 REMARK 3 T13: -0.0137 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 2.4028 L22: 2.1842 REMARK 3 L33: 2.6628 L12: -0.4865 REMARK 3 L13: -0.0446 L23: 0.8011 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.3037 S13: 0.0969 REMARK 3 S21: -0.1017 S22: 0.2240 S23: 0.0027 REMARK 3 S31: 0.0514 S32: 0.2232 S33: -0.1100 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 34:46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.616 4.645 16.535 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.1881 REMARK 3 T33: 0.0704 T12: -0.0258 REMARK 3 T13: -0.0042 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 3.5228 L22: 5.1340 REMARK 3 L33: 3.8989 L12: 0.4890 REMARK 3 L13: -0.5775 L23: -0.6531 REMARK 3 S TENSOR REMARK 3 S11: -0.0990 S12: 0.0569 S13: -0.2422 REMARK 3 S21: -0.1304 S22: 0.0537 S23: 0.0780 REMARK 3 S31: 0.2631 S32: -0.0565 S33: 0.0275 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 47:63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.951 6.175 15.106 REMARK 3 T TENSOR REMARK 3 T11: 0.1346 T22: 0.2740 REMARK 3 T33: 0.0463 T12: -0.0207 REMARK 3 T13: 0.0145 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 0.8498 L22: 1.9579 REMARK 3 L33: 4.0193 L12: -0.1017 REMARK 3 L13: -1.8028 L23: 0.6015 REMARK 3 S TENSOR REMARK 3 S11: 0.0941 S12: 0.6572 S13: 0.1419 REMARK 3 S21: -0.1050 S22: 0.0708 S23: 0.1896 REMARK 3 S31: -0.0302 S32: -0.1488 S33: -0.1147 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 64:80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.323 0.758 23.990 REMARK 3 T TENSOR REMARK 3 T11: 0.5389 T22: 0.2278 REMARK 3 T33: 0.3571 T12: -0.0408 REMARK 3 T13: 0.0143 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 3.1540 L22: 5.6376 REMARK 3 L33: 0.5631 L12: 1.2024 REMARK 3 L13: 0.5856 L23: -1.3106 REMARK 3 S TENSOR REMARK 3 S11: -0.3624 S12: 0.3921 S13: -1.2432 REMARK 3 S21: 0.1348 S22: -0.3412 S23: 0.0550 REMARK 3 S31: 1.2500 S32: -0.4097 S33: 0.5599 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 81:92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.616 15.576 24.205 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: 0.0454 REMARK 3 T33: 0.0235 T12: -0.0220 REMARK 3 T13: -0.0288 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 4.7786 L22: 4.5499 REMARK 3 L33: 4.8149 L12: -2.5011 REMARK 3 L13: -1.8854 L23: 1.7612 REMARK 3 S TENSOR REMARK 3 S11: -0.1573 S12: 0.0568 S13: -0.0936 REMARK 3 S21: 0.2829 S22: 0.1036 S23: -0.0325 REMARK 3 S31: 0.0622 S32: 0.0375 S33: 0.0789 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 93:108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.678 13.079 33.339 REMARK 3 T TENSOR REMARK 3 T11: 0.2513 T22: 0.1583 REMARK 3 T33: 0.0627 T12: -0.0325 REMARK 3 T13: -0.0585 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.5285 L22: 4.1458 REMARK 3 L33: 4.2919 L12: -1.3077 REMARK 3 L13: -1.1310 L23: 3.2921 REMARK 3 S TENSOR REMARK 3 S11: -0.1552 S12: -0.0235 S13: -0.2679 REMARK 3 S21: 0.3453 S22: 0.2497 S23: -0.1916 REMARK 3 S31: 0.2550 S32: 0.0983 S33: -0.1103 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 109:122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.676 10.007 21.618 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1754 REMARK 3 T33: 0.1340 T12: -0.0012 REMARK 3 T13: -0.0087 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 5.5121 L22: 4.3578 REMARK 3 L33: 5.0818 L12: -1.6430 REMARK 3 L13: -0.9471 L23: 1.2438 REMARK 3 S TENSOR REMARK 3 S11: -0.0931 S12: 0.1660 S13: -0.5729 REMARK 3 S21: 0.2270 S22: -0.0169 S23: -0.2567 REMARK 3 S31: 0.4793 S32: 0.5775 S33: 0.0506 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 123:138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.829 27.090 29.301 REMARK 3 T TENSOR REMARK 3 T11: 0.2212 T22: 0.1002 REMARK 3 T33: 0.2248 T12: -0.0203 REMARK 3 T13: -0.0360 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.0078 L22: 3.5914 REMARK 3 L33: 2.3764 L12: -2.6804 REMARK 3 L13: 2.0681 L23: -1.4706 REMARK 3 S TENSOR REMARK 3 S11: -0.3468 S12: -0.1802 S13: 0.7750 REMARK 3 S21: 0.1003 S22: 0.1872 S23: -0.3177 REMARK 3 S31: -0.5128 S32: 0.0090 S33: 0.1639 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 139:161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.998 19.624 22.206 REMARK 3 T TENSOR REMARK 3 T11: 0.1563 T22: 0.1304 REMARK 3 T33: 0.1372 T12: -0.0732 REMARK 3 T13: 0.0280 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.4780 L22: 1.8365 REMARK 3 L33: 3.2018 L12: 1.0334 REMARK 3 L13: -0.8499 L23: 1.1452 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: 0.2474 S13: 0.1697 REMARK 3 S21: -0.2202 S22: 0.1613 S23: -0.3866 REMARK 3 S31: -0.2925 S32: 0.3852 S33: -0.0873 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN A AND RESID 162:173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.177 18.253 12.334 REMARK 3 T TENSOR REMARK 3 T11: 0.2907 T22: 0.3121 REMARK 3 T33: 0.1372 T12: -0.0859 REMARK 3 T13: 0.0882 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 6.9748 L22: 3.4961 REMARK 3 L33: 3.1542 L12: -1.4669 REMARK 3 L13: -0.5445 L23: -0.0978 REMARK 3 S TENSOR REMARK 3 S11: 0.2992 S12: 0.8944 S13: 0.4584 REMARK 3 S21: -0.8559 S22: -0.0551 S23: -0.4262 REMARK 3 S31: -0.2892 S32: 0.4099 S33: -0.1587 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 3:64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.984 5.153 16.339 REMARK 3 T TENSOR REMARK 3 T11: 0.1356 T22: 0.2109 REMARK 3 T33: 0.1419 T12: -0.0351 REMARK 3 T13: -0.0184 T23: -0.0597 REMARK 3 L TENSOR REMARK 3 L11: 2.3400 L22: 3.1874 REMARK 3 L33: 2.7355 L12: 0.0863 REMARK 3 L13: 0.0130 L23: -0.2560 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: 0.5424 S13: -0.2268 REMARK 3 S21: -0.2675 S22: 0.0018 S23: 0.2952 REMARK 3 S31: 0.0595 S32: -0.1864 S33: 0.0063 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN B AND RESID 65:173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.043 5.120 28.298 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.0504 REMARK 3 T33: 0.1616 T12: -0.0211 REMARK 3 T13: 0.0219 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.4269 L22: 2.8842 REMARK 3 L33: 2.8341 L12: -0.1922 REMARK 3 L13: 0.0230 L23: 0.2531 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: 0.2141 S13: -0.0058 REMARK 3 S21: 0.0127 S22: -0.0186 S23: 0.2971 REMARK 3 S31: -0.1408 S32: -0.1310 S33: 0.0373 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE 2.1.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.729 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1R8S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% ETHANOL, 0.1M TRIS, CRYOPROTECTION REMARK 280 25% ETHYLENE GLYCOL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.77000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.77000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 328 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 67 REMARK 465 ASP A 68 REMARK 465 LYS A 69 REMARK 465 ILE A 70 REMARK 465 ARG A 71 REMARK 465 PRO A 72 REMARK 465 LYS A 174 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 67 REMARK 465 ASP B 68 REMARK 465 LYS B 69 REMARK 465 ILE B 70 REMARK 465 ARG B 71 REMARK 465 PRO B 72 REMARK 465 LEU B 73 REMARK 465 TRP B 74 REMARK 465 ARG B 75 REMARK 465 HIS B 76 REMARK 465 LYS B 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 76 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 77 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 TYR A 163 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 TYR B 77 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 78 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 79 CG CD OE1 NE2 REMARK 470 ASN B 80 CG OD1 ND2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 TYR B 163 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 398 O HOH A 414 2.17 REMARK 500 OE1 GLN B 82 O HOH B 440 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 310 O HOH A 310 2655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 55 -117.39 50.49 REMARK 500 LYS B 55 -116.23 49.32 REMARK 500 ASP B 92 78.95 -113.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 416 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 27 OG1 REMARK 620 2 GDP A 201 O1B 83.1 REMARK 620 3 HOH A 349 O 108.8 89.6 REMARK 620 4 HOH A 383 O 104.2 172.7 88.3 REMARK 620 5 HOH A 384 O 86.6 98.0 163.7 82.4 REMARK 620 6 HOH A 406 O 170.1 103.9 78.6 68.8 85.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 27 OG1 REMARK 620 2 GDP B 201 O1B 84.1 REMARK 620 3 HOH B 361 O 170.9 103.8 REMARK 620 4 HOH B 399 O 92.3 90.0 83.3 REMARK 620 5 HOH B 415 O 104.8 90.2 79.9 162.8 REMARK 620 6 HOH B 429 O 98.3 176.1 74.1 92.9 86.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-ENHIA.01533.A RELATED DB: TARGETTRACK DBREF 4Y0V A 1 174 UNP C4LXL1 C4LXL1_ENTHI 1 174 DBREF 4Y0V B 1 174 UNP C4LXL1 C4LXL1_ENTHI 1 174 SEQADV 4Y0V GLY A -3 UNP C4LXL1 EXPRESSION TAG SEQADV 4Y0V PRO A -2 UNP C4LXL1 EXPRESSION TAG SEQADV 4Y0V GLY A -1 UNP C4LXL1 EXPRESSION TAG SEQADV 4Y0V SER A 0 UNP C4LXL1 EXPRESSION TAG SEQADV 4Y0V GLY B -3 UNP C4LXL1 EXPRESSION TAG SEQADV 4Y0V PRO B -2 UNP C4LXL1 EXPRESSION TAG SEQADV 4Y0V GLY B -1 UNP C4LXL1 EXPRESSION TAG SEQADV 4Y0V SER B 0 UNP C4LXL1 EXPRESSION TAG SEQRES 1 A 178 GLY PRO GLY SER MET GLY SER TRP LEU SER LYS LEU LEU SEQRES 2 A 178 GLY LYS LYS GLU MET ARG ILE LEU MET VAL GLY LEU ASP SEQRES 3 A 178 ALA ALA GLY LYS THR SER ILE LEU TYR LYS LEU LYS LEU SEQRES 4 A 178 GLY GLU ILE VAL THR THR ILE PRO THR ILE GLY PHE ASN SEQRES 5 A 178 VAL GLU THR VAL GLU TYR LYS ASN ILE SER PHE THR VAL SEQRES 6 A 178 TRP ASP VAL GLY GLY GLN ASP LYS ILE ARG PRO LEU TRP SEQRES 7 A 178 ARG HIS TYR TYR GLN ASN THR GLN ALA ILE ILE PHE VAL SEQRES 8 A 178 VAL ASP SER ASN ASP ARG ASP ARG ILE GLY GLU ALA ARG SEQRES 9 A 178 GLU GLU LEU MET LYS MET LEU ASN GLU ASP GLU MET ARG SEQRES 10 A 178 ASN ALA ILE LEU LEU VAL PHE ALA ASN LYS HIS ASP LEU SEQRES 11 A 178 PRO GLN ALA MET SER ILE SER GLU VAL THR GLU LYS LEU SEQRES 12 A 178 GLY LEU GLN THR ILE LYS ASN ARG LYS TRP TYR CYS GLN SEQRES 13 A 178 THR SER CYS ALA THR ASN GLY ASP GLY LEU TYR GLU GLY SEQRES 14 A 178 LEU ASP TRP LEU ALA ASP ASN LEU LYS SEQRES 1 B 178 GLY PRO GLY SER MET GLY SER TRP LEU SER LYS LEU LEU SEQRES 2 B 178 GLY LYS LYS GLU MET ARG ILE LEU MET VAL GLY LEU ASP SEQRES 3 B 178 ALA ALA GLY LYS THR SER ILE LEU TYR LYS LEU LYS LEU SEQRES 4 B 178 GLY GLU ILE VAL THR THR ILE PRO THR ILE GLY PHE ASN SEQRES 5 B 178 VAL GLU THR VAL GLU TYR LYS ASN ILE SER PHE THR VAL SEQRES 6 B 178 TRP ASP VAL GLY GLY GLN ASP LYS ILE ARG PRO LEU TRP SEQRES 7 B 178 ARG HIS TYR TYR GLN ASN THR GLN ALA ILE ILE PHE VAL SEQRES 8 B 178 VAL ASP SER ASN ASP ARG ASP ARG ILE GLY GLU ALA ARG SEQRES 9 B 178 GLU GLU LEU MET LYS MET LEU ASN GLU ASP GLU MET ARG SEQRES 10 B 178 ASN ALA ILE LEU LEU VAL PHE ALA ASN LYS HIS ASP LEU SEQRES 11 B 178 PRO GLN ALA MET SER ILE SER GLU VAL THR GLU LYS LEU SEQRES 12 B 178 GLY LEU GLN THR ILE LYS ASN ARG LYS TRP TYR CYS GLN SEQRES 13 B 178 THR SER CYS ALA THR ASN GLY ASP GLY LEU TYR GLU GLY SEQRES 14 B 178 LEU ASP TRP LEU ALA ASP ASN LEU LYS HET GDP A 201 28 HET MG A 202 1 HET GDP B 201 28 HET MG B 202 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *313(H2 O) HELIX 1 AA1 SER A 3 LEU A 9 1 7 HELIX 2 AA2 GLY A 25 LYS A 34 1 10 HELIX 3 AA3 LEU A 73 GLN A 79 5 7 HELIX 4 AA4 ASP A 92 ASP A 94 5 3 HELIX 5 AA5 ARG A 95 ASN A 108 1 14 HELIX 6 AA6 GLU A 109 ARG A 113 5 5 HELIX 7 AA7 SER A 131 LEU A 139 1 9 HELIX 8 AA8 GLY A 140 ILE A 144 5 5 HELIX 9 AA9 GLY A 161 ASN A 172 1 12 HELIX 10 AB1 TRP B 4 LEU B 9 1 6 HELIX 11 AB2 GLY B 25 LYS B 34 1 10 HELIX 12 AB3 ARG B 95 ASN B 108 1 14 HELIX 13 AB4 GLU B 109 ARG B 113 5 5 HELIX 14 AB5 SER B 131 LEU B 139 1 9 HELIX 15 AB6 GLY B 140 ILE B 144 5 5 HELIX 16 AB7 GLY B 161 ASN B 172 1 12 SHEET 1 AA114 TRP A 149 THR A 153 0 SHEET 2 AA114 ILE A 116 ASN A 122 1 N VAL A 119 O GLN A 152 SHEET 3 AA114 THR A 81 ASP A 89 1 N ILE A 84 O LEU A 118 SHEET 4 AA114 MET A 14 GLY A 20 1 N LEU A 17 O ILE A 85 SHEET 5 AA114 ILE A 57 ASP A 63 1 O THR A 60 N MET A 18 SHEET 6 AA114 PHE A 47 TYR A 54 -1 N GLU A 50 O VAL A 61 SHEET 7 AA114 ILE A 38 THR A 44 -1 N THR A 41 O VAL A 49 SHEET 8 AA114 ILE B 38 THR B 44 -1 O ILE B 38 N THR A 40 SHEET 9 AA114 PHE B 47 TYR B 54 -1 O VAL B 49 N THR B 41 SHEET 10 AA114 ILE B 57 ASP B 63 -1 O ILE B 57 N TYR B 54 SHEET 11 AA114 MET B 14 GLY B 20 1 N ILE B 16 O SER B 58 SHEET 12 AA114 THR B 81 ASP B 89 1 O ILE B 85 N LEU B 17 SHEET 13 AA114 ILE B 116 ASN B 122 1 O LEU B 118 N ILE B 84 SHEET 14 AA114 TRP B 149 THR B 153 1 O TYR B 150 N VAL B 119 LINK OG1 THR A 27 MG MG A 202 1555 1555 2.11 LINK O1B GDP A 201 MG MG A 202 1555 1555 1.94 LINK MG MG A 202 O HOH A 349 1555 1555 2.25 LINK MG MG A 202 O HOH A 383 1555 1555 2.07 LINK MG MG A 202 O HOH A 384 1555 1555 2.19 LINK MG MG A 202 O HOH A 406 1555 1555 2.65 LINK OG1 THR B 27 MG MG B 202 1555 1555 2.20 LINK O1B GDP B 201 MG MG B 202 1555 1555 2.03 LINK MG MG B 202 O HOH B 361 1555 1555 2.56 LINK MG MG B 202 O HOH B 399 1555 1555 2.25 LINK MG MG B 202 O HOH B 415 1555 1555 1.98 LINK MG MG B 202 O HOH B 429 1555 1555 2.34 SITE 1 AC1 21 ALA A 23 ALA A 24 GLY A 25 LYS A 26 SITE 2 AC1 21 THR A 27 SER A 28 ASN A 122 LYS A 123 SITE 3 AC1 21 ASP A 125 CYS A 155 ALA A 156 MG A 202 SITE 4 AC1 21 HOH A 349 HOH A 362 HOH A 382 HOH A 384 SITE 5 AC1 21 HOH A 406 HOH A 442 HOH A 445 GLY B 46 SITE 6 AC1 21 ASN B 48 SITE 1 AC2 6 THR A 27 GDP A 201 HOH A 349 HOH A 383 SITE 2 AC2 6 HOH A 384 HOH A 406 SITE 1 AC3 23 ILE A 45 GLY A 46 ASN A 48 ALA B 23 SITE 2 AC3 23 ALA B 24 GLY B 25 LYS B 26 THR B 27 SITE 3 AC3 23 SER B 28 ASN B 122 LYS B 123 ASP B 125 SITE 4 AC3 23 LEU B 126 CYS B 155 ALA B 156 THR B 157 SITE 5 AC3 23 MG B 202 HOH B 361 HOH B 387 HOH B 399 SITE 6 AC3 23 HOH B 415 HOH B 443 HOH B 454 SITE 1 AC4 6 THR B 27 GDP B 201 HOH B 361 HOH B 399 SITE 2 AC4 6 HOH B 415 HOH B 429 CRYST1 123.540 40.660 78.950 90.00 97.45 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008095 0.000000 0.001058 0.00000 SCALE2 0.000000 0.024594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012774 0.00000