HEADER HYDROLASE/HYDROLASE INHIBITOR 06-FEB-15 4Y11 TITLE TRYPSIN IN COMPLEX WITH WITH BPTI MUTANT (2S)-2-AMINO-4,4,4- TITLE 2 TRIFLUOROBUTANOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATIONIC TRYPSIN; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: BETA-TRYPSIN, TRYPSIN; COMPND 5 EC: 3.4.21.4; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PANCREATIC TRYPSIN INHIBITOR; COMPND 8 CHAIN: I; COMPND 9 FRAGMENT: UNP RESIDUES 36-93; COMPND 10 SYNONYM: APROTININ,BASIC PROTEASE INHIBITOR,BPTI; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 OTHER_DETAILS: NON-CANONICAL AMINO ACID 3EG INCORPORATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_COMMON: CATTLE; SOURCE 9 ORGANISM_TAXID: 9913 KEYWDS HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.LOLL,S.YE,A.A.BERGER,U.MUELOW,C.ALINGS,M.C.WAHL,B.KOKSCH REVDAT 3 18-APR-18 4Y11 1 JRNL REMARK LINK SITE REVDAT 3 2 1 ATOM REVDAT 2 26-AUG-15 4Y11 1 JRNL REVDAT 1 24-JUN-15 4Y11 0 JRNL AUTH S.YE,B.LOLL,A.A.BERGER,U.MULOW,C.ALINGS,M.C.WAHL,B.KOKSCH JRNL TITL FLUORINE TEAMS UP WITH WATER TO RESTORE INHIBITOR ACTIVITY JRNL TITL 2 TO MUTANT BPTI. JRNL REF CHEM SCI V. 6 5246 2015 JRNL REFN ISSN 2041-6520 JRNL PMID 29449928 JRNL DOI 10.1039/C4SC03227F REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 93005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1160 - 4.0377 0.95 3024 159 0.1575 0.1820 REMARK 3 2 4.0377 - 3.2055 1.00 3025 159 0.1322 0.1452 REMARK 3 3 3.2055 - 2.8004 1.00 3008 158 0.1426 0.1558 REMARK 3 4 2.8004 - 2.5445 1.00 2986 158 0.1337 0.1640 REMARK 3 5 2.5445 - 2.3621 1.00 2984 157 0.1235 0.1297 REMARK 3 6 2.3621 - 2.2229 0.99 2962 155 0.1183 0.1382 REMARK 3 7 2.2229 - 2.1116 1.00 2976 157 0.1155 0.1357 REMARK 3 8 2.1116 - 2.0197 1.00 2941 155 0.1136 0.1405 REMARK 3 9 2.0197 - 1.9419 1.00 2983 157 0.1140 0.1475 REMARK 3 10 1.9419 - 1.8749 1.00 2936 154 0.1083 0.1332 REMARK 3 11 1.8749 - 1.8163 1.00 2957 156 0.1077 0.1554 REMARK 3 12 1.8163 - 1.7644 1.00 2944 155 0.1079 0.1282 REMARK 3 13 1.7644 - 1.7179 1.00 2985 157 0.1075 0.1282 REMARK 3 14 1.7179 - 1.6760 1.00 2936 155 0.1010 0.1396 REMARK 3 15 1.6760 - 1.6379 1.00 2923 153 0.1038 0.1251 REMARK 3 16 1.6379 - 1.6031 1.00 2959 156 0.1041 0.1217 REMARK 3 17 1.6031 - 1.5710 1.00 2933 155 0.1068 0.1448 REMARK 3 18 1.5710 - 1.5413 1.00 2951 155 0.1192 0.1358 REMARK 3 19 1.5413 - 1.5138 1.00 2925 154 0.1257 0.1719 REMARK 3 20 1.5138 - 1.4882 1.00 2964 156 0.1355 0.1679 REMARK 3 21 1.4882 - 1.4641 1.00 2935 154 0.1446 0.1897 REMARK 3 22 1.4641 - 1.4416 1.00 2930 155 0.1552 0.1779 REMARK 3 23 1.4416 - 1.4204 1.00 2959 155 0.1725 0.2053 REMARK 3 24 1.4204 - 1.4004 1.00 2929 154 0.1852 0.2001 REMARK 3 25 1.4004 - 1.3815 1.00 2944 155 0.1865 0.1879 REMARK 3 26 1.3815 - 1.3635 1.00 2918 154 0.2007 0.2216 REMARK 3 27 1.3635 - 1.3465 1.00 2937 154 0.2137 0.2210 REMARK 3 28 1.3465 - 1.3303 1.00 2957 155 0.2216 0.2611 REMARK 3 29 1.3303 - 1.3148 1.00 2906 153 0.2531 0.2837 REMARK 3 30 1.3148 - 1.3000 0.91 2639 139 0.3330 0.3392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2387 REMARK 3 ANGLE : 1.583 3263 REMARK 3 CHIRALITY : 0.097 350 REMARK 3 PLANARITY : 0.010 419 REMARK 3 DIHEDRAL : 11.951 908 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93017 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.79900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 TO 2.2 M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.48550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.05100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.78900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.48550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.05100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.78900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.48550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.05100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.78900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.48550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.05100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.78900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG I 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 429 O HOH E 596 1.94 REMARK 500 OH TYR E 20 O1 GOL E 306 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH TYR I 21 HH TYR I 21 4559 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL E 75 C VAL E 75 O -0.186 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL E 75 CA - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 71 -74.81 -121.57 REMARK 500 SER E 212 -73.65 -124.39 REMARK 500 ASN I 44 108.79 -161.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL E 75 -13.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 307 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 70 OE2 REMARK 620 2 ASN E 72 O 89.9 REMARK 620 3 VAL E 75 O 166.6 82.7 REMARK 620 4 GLU E 80 OE2 101.1 162.9 88.8 REMARK 620 5 HOH E 474 O 77.7 101.3 92.7 93.9 REMARK 620 6 HOH E 403 O 81.7 89.4 109.2 79.3 156.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 I 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 I 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 I 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 I 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL I 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y0Y RELATED DB: PDB REMARK 900 RELATED ID: 4Y0Z RELATED DB: PDB REMARK 900 RELATED ID: 4Y10 RELATED DB: PDB DBREF 4Y11 E 16 243 UNP P00760 TRY1_BOVIN 24 246 DBREF 4Y11 I 1 58 UNP P00974 BPT1_BOVIN 36 93 SEQADV 4Y11 3EG I 15 UNP P00974 LYS 50 ENGINEERED MUTATION SEQRES 1 E 223 ILE VAL GLY GLY TYR THR CYS GLY ALA ASN THR VAL PRO SEQRES 2 E 223 TYR GLN VAL SER LEU ASN SER GLY TYR HIS PHE CYS GLY SEQRES 3 E 223 GLY SER LEU ILE ASN SER GLN TRP VAL VAL SER ALA ALA SEQRES 4 E 223 HIS CYS TYR LYS SER GLY ILE GLN VAL ARG LEU GLY GLU SEQRES 5 E 223 ASP ASN ILE ASN VAL VAL GLU GLY ASN GLU GLN PHE ILE SEQRES 6 E 223 SER ALA SER LYS SER ILE VAL HIS PRO SER TYR ASN SER SEQRES 7 E 223 ASN THR LEU ASN ASN ASP ILE MET LEU ILE LYS LEU LYS SEQRES 8 E 223 SER ALA ALA SER LEU ASN SER ARG VAL ALA SER ILE SER SEQRES 9 E 223 LEU PRO THR SER CYS ALA SER ALA GLY THR GLN CYS LEU SEQRES 10 E 223 ILE SER GLY TRP GLY ASN THR LYS SER SER GLY THR SER SEQRES 11 E 223 TYR PRO ASP VAL LEU LYS CYS LEU LYS ALA PRO ILE LEU SEQRES 12 E 223 SER ASP SER SER CYS LYS SER ALA TYR PRO GLY GLN ILE SEQRES 13 E 223 THR SER ASN MET PHE CYS ALA GLY TYR LEU GLU GLY GLY SEQRES 14 E 223 LYS ASP SER CYS GLN GLY ASP SER GLY GLY PRO VAL VAL SEQRES 15 E 223 CYS SER GLY LYS LEU GLN GLY ILE VAL SER TRP GLY SER SEQRES 16 E 223 GLY CYS ALA GLN LYS ASN LYS PRO GLY VAL TYR THR LYS SEQRES 17 E 223 VAL CYS ASN TYR VAL SER TRP ILE LYS GLN THR ILE ALA SEQRES 18 E 223 SER ASN SEQRES 1 I 58 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 I 58 CYS 3EG ALA ARG ILE ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 I 58 ALA GLY LEU CYS GLN THR PHE VAL TYR GLY GLY CYS ARG SEQRES 4 I 58 ALA LYS ARG ASN ASN PHE LYS SER ALA GLU ASP CYS MET SEQRES 5 I 58 ARG THR CYS GLY GLY ALA HET 3EG I 15 13 HET SO4 E 301 5 HET SO4 E 302 5 HET SO4 E 303 5 HET SO4 E 304 5 HET SO4 E 305 5 HET GOL E 306 14 HET CA E 307 1 HET SO4 I 101 5 HET SO4 I 102 5 HET SO4 I 103 5 HET SO4 I 104 5 HET GOL I 105 14 HETNAM 3EG (2S)-2-AMINO-4,4,4-TRIFLUOROBUTANOIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 3EG C4 H6 F3 N O2 FORMUL 3 SO4 9(O4 S 2-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 9 CA CA 2+ FORMUL 15 HOH *301(H2 O) HELIX 1 AA1 ALA E 55 TYR E 59 5 5 HELIX 2 AA2 SER E 164 TYR E 172 1 9 HELIX 3 AA3 TYR E 232 SER E 242 1 11 HELIX 4 AA4 ASP I 3 GLU I 7 5 5 HELIX 5 AA5 SER I 47 GLY I 56 1 10 SHEET 1 AA1 7 TYR E 20 THR E 21 0 SHEET 2 AA1 7 LYS E 156 PRO E 161 -1 O CYS E 157 N TYR E 20 SHEET 3 AA1 7 GLN E 135 GLY E 140 -1 N ILE E 138 O LEU E 158 SHEET 4 AA1 7 PRO E 200 CYS E 203 -1 O VAL E 202 N LEU E 137 SHEET 5 AA1 7 LYS E 206 TRP E 213 -1 O LYS E 206 N CYS E 203 SHEET 6 AA1 7 GLY E 224 LYS E 228 -1 O VAL E 225 N TRP E 213 SHEET 7 AA1 7 MET E 180 ALA E 183 -1 N PHE E 181 O TYR E 226 SHEET 1 AA2 7 GLN E 30 ASN E 34 0 SHEET 2 AA2 7 HIS E 40 ASN E 48 -1 O CYS E 42 N LEU E 33 SHEET 3 AA2 7 TRP E 51 SER E 54 -1 O TRP E 51 N ILE E 47 SHEET 4 AA2 7 MET E 104 LEU E 108 -1 O ILE E 106 N VAL E 52 SHEET 5 AA2 7 GLN E 81 VAL E 90 -1 N ILE E 89 O LEU E 105 SHEET 6 AA2 7 GLN E 64 LEU E 67 -1 N LEU E 67 O GLN E 81 SHEET 7 AA2 7 GLN E 30 ASN E 34 -1 N SER E 32 O ARG E 66 SHEET 1 AA3 2 ILE I 18 ASN I 24 0 SHEET 2 AA3 2 LEU I 29 TYR I 35 -1 O TYR I 35 N ILE I 18 SSBOND 1 CYS E 22 CYS E 157 1555 1555 2.08 SSBOND 2 CYS E 42 CYS E 58 1555 1555 2.05 SSBOND 3 CYS E 128 CYS E 230 1555 1555 2.03 SSBOND 4 CYS E 136 CYS E 203 1555 1555 2.02 SSBOND 5 CYS E 168 CYS E 182 1555 1555 2.06 SSBOND 6 CYS E 193 CYS E 217 1555 1555 2.10 SSBOND 7 CYS I 5 CYS I 55 1555 1555 2.05 SSBOND 8 CYS I 14 CYS I 38 1555 1555 2.08 SSBOND 9 CYS I 30 CYS I 51 1555 1555 2.16 LINK OE2 GLU E 70 CA CA E 307 1555 1555 2.32 LINK O ASN E 72 CA CA E 307 1555 1555 2.35 LINK O VAL E 75 CA CA E 307 1555 1555 2.19 LINK OE2 GLU E 80 CA CA E 307 1555 1555 2.36 LINK C CYS I 14 N 3EG I 15 1555 1555 1.33 LINK C 3EG I 15 N ALA I 16 1555 1555 1.33 LINK CA CA E 307 O HOH E 474 1555 1555 2.35 LINK CA CA E 307 O HOH E 403 1555 1555 2.39 SITE 1 AC1 4 ASN E 95 THR E 98 ASN E 100 HOH E 430 SITE 1 AC2 5 LYS E 169 PRO E 173 GLY E 174 HOH E 487 SITE 2 AC2 5 HOH E 446 SITE 1 AC3 8 TYR E 59 LYS E 60 SER E 61 HOH E 426 SITE 2 AC3 8 HOH E 544 HOH E 549 HOH E 408 LYS I 46 SITE 1 AC4 4 ILE E 47 ASN E 48 HOH E 560 HOH E 546 SITE 1 AC5 3 THR E 177 SER E 178 HOH E 478 SITE 1 AC6 5 TYR E 20 CYS E 22 THR E 26 LEU E 137 SITE 2 AC6 5 LYS E 159 SITE 1 AC7 6 GLU E 70 ASN E 72 VAL E 75 GLU E 80 SITE 2 AC7 6 HOH E 474 HOH E 403 SITE 1 AC8 5 ARG I 42 HOH I 201 HOH I 202 HOH I 210 SITE 2 AC8 5 HOH I 265 SITE 1 AC9 8 GLU I 7 ARG I 42 HOH I 208 HOH I 241 SITE 2 AC9 8 HOH I 205 HOH I 235 HOH I 232 HOH I 244 SITE 1 AD1 7 PRO I 9 TYR I 10 THR I 11 GLY I 12 SITE 2 AD1 7 HOH I 220 HOH I 250 HOH I 266 SITE 1 AD2 8 ARG I 20 TYR I 35 GLY I 37 HOH I 213 SITE 2 AD2 8 HOH I 233 HOH I 242 HOH I 215 HOH I 263 SITE 1 AD3 6 ARG I 42 ASN I 44 PHE I 45 HOH I 209 SITE 2 AD3 6 HOH I 218 HOH I 230 CRYST1 74.971 82.102 123.578 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008092 0.00000