HEADER RNA, TRANSFERASE 08-FEB-15 4Y1O TITLE OCEANOBACILLUS IHEYENSIS GROUP II INTRON DOMAIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROUP II INTRON, DOMAIN 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: OCEANOBACILLUS IHEYENSIS HTE831; SOURCE 4 ORGANISM_TAXID: 221109 KEYWDS GROUP II INTRON, DOMAIN 1, RNA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHAO,K.R.RAJASHANKAR,M.MARCIA,A.M.PYLE REVDAT 5 28-FEB-24 4Y1O 1 REMARK REVDAT 4 02-DEC-15 4Y1O 1 JRNL REVDAT 3 25-NOV-15 4Y1O 1 REMARK REVDAT 2 11-NOV-15 4Y1O 1 JRNL REVDAT 1 14-OCT-15 4Y1O 0 JRNL AUTH C.ZHAO,K.R.RAJASHANKAR,M.MARCIA,A.M.PYLE JRNL TITL CRYSTAL STRUCTURE OF GROUP II INTRON DOMAIN 1 REVEALS A JRNL TITL 2 TEMPLATE FOR RNA ASSEMBLY. JRNL REF NAT.CHEM.BIOL. V. 11 967 2015 JRNL REFN ESSN 1552-4469 JRNL PMID 26502156 JRNL DOI 10.1038/NCHEMBIO.1949 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 75788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2568 - 8.8204 0.98 2644 162 0.1753 0.1673 REMARK 3 2 8.8204 - 7.0130 0.98 2651 144 0.1611 0.2102 REMARK 3 3 7.0130 - 6.1301 1.00 2683 162 0.1596 0.1904 REMARK 3 4 6.1301 - 5.5712 1.00 2702 133 0.1400 0.2220 REMARK 3 5 5.5712 - 5.1727 0.98 2667 138 0.1320 0.1931 REMARK 3 6 5.1727 - 4.8683 0.99 2654 159 0.1480 0.1793 REMARK 3 7 4.8683 - 4.6249 1.00 2701 149 0.1600 0.2172 REMARK 3 8 4.6249 - 4.4238 1.00 2692 156 0.1605 0.2386 REMARK 3 9 4.4238 - 4.2537 1.00 2690 124 0.1687 0.2070 REMARK 3 10 4.2537 - 4.1070 0.99 2733 148 0.1647 0.2216 REMARK 3 11 4.1070 - 3.9787 0.98 2626 145 0.1739 0.2483 REMARK 3 12 3.9787 - 3.8651 0.99 2667 145 0.1866 0.2455 REMARK 3 13 3.8651 - 3.7634 1.00 2693 142 0.1730 0.2577 REMARK 3 14 3.7634 - 3.6717 1.00 2650 131 0.1858 0.2466 REMARK 3 15 3.6717 - 3.5883 0.99 2751 136 0.2037 0.2838 REMARK 3 16 3.5883 - 3.5119 1.00 2668 128 0.1969 0.2904 REMARK 3 17 3.5119 - 3.4417 1.00 2787 127 0.2327 0.2687 REMARK 3 18 3.4417 - 3.3768 0.99 2622 131 0.2215 0.2545 REMARK 3 19 3.3768 - 3.3165 0.98 2685 165 0.2202 0.3499 REMARK 3 20 3.3165 - 3.2603 0.98 2583 131 0.2180 0.2867 REMARK 3 21 3.2603 - 3.2078 0.99 2681 157 0.2195 0.2683 REMARK 3 22 3.2078 - 3.1584 0.99 2698 142 0.2222 0.2999 REMARK 3 23 3.1584 - 3.1120 0.99 2681 133 0.2405 0.2993 REMARK 3 24 3.1120 - 3.0682 0.99 2739 138 0.2779 0.3505 REMARK 3 25 3.0682 - 3.0267 0.98 2565 143 0.3281 0.4304 REMARK 3 26 3.0267 - 2.9874 0.95 2667 119 0.3850 0.4116 REMARK 3 27 2.9874 - 2.9501 0.90 2393 127 0.4563 0.5060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 12367 REMARK 3 ANGLE : 1.099 19260 REMARK 3 CHIRALITY : 0.046 2570 REMARK 3 PLANARITY : 0.007 514 REMARK 3 DIHEDRAL : 14.939 6129 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4065 -23.7370 -42.9699 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.4963 REMARK 3 T33: 0.4386 T12: 0.0560 REMARK 3 T13: -0.1672 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.4402 L22: 1.0632 REMARK 3 L33: 1.2883 L12: 1.0518 REMARK 3 L13: -0.5452 L23: -0.0940 REMARK 3 S TENSOR REMARK 3 S11: -0.0441 S12: 0.1270 S13: 0.4119 REMARK 3 S21: -0.7457 S22: -0.1530 S23: 0.0426 REMARK 3 S31: 0.5284 S32: 0.2029 S33: -0.0518 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0006 -53.1482 -24.4111 REMARK 3 T TENSOR REMARK 3 T11: 0.8859 T22: 0.6983 REMARK 3 T33: 0.7363 T12: -0.3117 REMARK 3 T13: -0.1431 T23: 0.0759 REMARK 3 L TENSOR REMARK 3 L11: -0.4358 L22: 0.0698 REMARK 3 L33: -0.0306 L12: 0.1016 REMARK 3 L13: -0.6669 L23: -0.2163 REMARK 3 S TENSOR REMARK 3 S11: 0.2523 S12: 0.0536 S13: 0.3795 REMARK 3 S21: -0.1561 S22: 0.2689 S23: 0.6182 REMARK 3 S31: 0.1189 S32: 0.1687 S33: 0.0065 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9908 -20.5145 -14.3484 REMARK 3 T TENSOR REMARK 3 T11: 0.7622 T22: 0.5000 REMARK 3 T33: 0.4822 T12: -0.0069 REMARK 3 T13: 0.0107 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: -0.2924 L22: 0.1287 REMARK 3 L33: 0.3392 L12: -0.0485 REMARK 3 L13: 0.3268 L23: -0.1148 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: 0.1415 S13: -0.1556 REMARK 3 S21: 0.6047 S22: 0.2296 S23: -0.0716 REMARK 3 S31: 0.4646 S32: 0.1628 S33: -0.0104 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4316 -7.1282 -22.4989 REMARK 3 T TENSOR REMARK 3 T11: 0.5517 T22: 0.6693 REMARK 3 T33: 0.7463 T12: -0.0487 REMARK 3 T13: 0.1290 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: -0.2534 L22: 0.6337 REMARK 3 L33: 0.6721 L12: 0.6013 REMARK 3 L13: 0.7284 L23: 1.0578 REMARK 3 S TENSOR REMARK 3 S11: -0.0865 S12: -0.1291 S13: 0.1206 REMARK 3 S21: 0.3165 S22: -0.1900 S23: 0.4596 REMARK 3 S31: 0.3338 S32: -0.2314 S33: -0.0080 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1370 -1.1291 -12.0128 REMARK 3 T TENSOR REMARK 3 T11: 1.2543 T22: 1.0511 REMARK 3 T33: 1.2929 T12: -0.1296 REMARK 3 T13: 0.3970 T23: -0.1822 REMARK 3 L TENSOR REMARK 3 L11: 0.6568 L22: 0.0284 REMARK 3 L33: 0.3125 L12: 0.0314 REMARK 3 L13: 0.3787 L23: 0.0473 REMARK 3 S TENSOR REMARK 3 S11: -0.4850 S12: -0.9188 S13: 0.3768 REMARK 3 S21: 0.8780 S22: -0.7238 S23: 0.0578 REMARK 3 S31: 0.3495 S32: -0.3845 S33: -0.0921 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6394 -32.7339 -22.0063 REMARK 3 T TENSOR REMARK 3 T11: 0.7736 T22: 0.6023 REMARK 3 T33: 0.6371 T12: -0.0565 REMARK 3 T13: 0.0829 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 0.0701 L22: 0.0046 REMARK 3 L33: -0.0920 L12: -0.1888 REMARK 3 L13: 0.1326 L23: -0.1875 REMARK 3 S TENSOR REMARK 3 S11: 0.2038 S12: -0.0838 S13: 0.0659 REMARK 3 S21: 0.1103 S22: -0.1834 S23: 0.0268 REMARK 3 S31: 0.0193 S32: 0.0537 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4840 -39.5550 -47.8353 REMARK 3 T TENSOR REMARK 3 T11: 0.5869 T22: 0.4948 REMARK 3 T33: 0.4691 T12: 0.0518 REMARK 3 T13: -0.0886 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.2992 L22: 0.6860 REMARK 3 L33: 2.2097 L12: -0.4199 REMARK 3 L13: -0.5454 L23: -0.3375 REMARK 3 S TENSOR REMARK 3 S11: -0.6896 S12: -0.3508 S13: -0.1656 REMARK 3 S21: 0.6749 S22: 0.4841 S23: 0.1010 REMARK 3 S31: 0.3773 S32: 0.2094 S33: -0.0116 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3561 -36.9589 -67.5647 REMARK 3 T TENSOR REMARK 3 T11: 1.0101 T22: 1.0976 REMARK 3 T33: 1.4807 T12: -0.1521 REMARK 3 T13: 0.0314 T23: -0.1281 REMARK 3 L TENSOR REMARK 3 L11: 0.1331 L22: 0.0228 REMARK 3 L33: 0.0415 L12: -0.0155 REMARK 3 L13: -0.2565 L23: -0.0434 REMARK 3 S TENSOR REMARK 3 S11: -0.1179 S12: -0.2607 S13: 0.3837 REMARK 3 S21: -0.7178 S22: -0.4883 S23: -0.3679 REMARK 3 S31: -0.1317 S32: -0.1305 S33: -0.0106 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1163 -44.5796 -65.8141 REMARK 3 T TENSOR REMARK 3 T11: 0.4733 T22: 0.7044 REMARK 3 T33: 0.7984 T12: -0.1373 REMARK 3 T13: -0.1365 T23: -0.0724 REMARK 3 L TENSOR REMARK 3 L11: 0.9223 L22: -0.2749 REMARK 3 L33: 0.1023 L12: -1.5488 REMARK 3 L13: -0.8527 L23: 0.1805 REMARK 3 S TENSOR REMARK 3 S11: -0.0979 S12: 0.0613 S13: 0.2993 REMARK 3 S21: 0.0371 S22: 0.1108 S23: 0.0443 REMARK 3 S31: 0.0203 S32: 0.1499 S33: 0.0019 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.4796 -28.4117 -74.7005 REMARK 3 T TENSOR REMARK 3 T11: 0.6076 T22: 0.5950 REMARK 3 T33: 0.5230 T12: -0.0118 REMARK 3 T13: 0.0679 T23: 0.0916 REMARK 3 L TENSOR REMARK 3 L11: 1.2229 L22: 0.0183 REMARK 3 L33: 0.7918 L12: -0.5857 REMARK 3 L13: 0.2492 L23: 0.3062 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.3464 S13: 0.1105 REMARK 3 S21: -0.0913 S22: -0.1083 S23: -0.1184 REMARK 3 S31: -0.0883 S32: 0.2318 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 247 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8735 -59.6919 -65.7022 REMARK 3 T TENSOR REMARK 3 T11: 0.7238 T22: 0.4837 REMARK 3 T33: 0.6628 T12: 0.0702 REMARK 3 T13: 0.0064 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.6211 L22: -0.0189 REMARK 3 L33: 0.4948 L12: -0.8155 REMARK 3 L13: 0.2606 L23: -0.1948 REMARK 3 S TENSOR REMARK 3 S11: -0.5277 S12: -0.0145 S13: 0.0731 REMARK 3 S21: 0.0834 S22: 0.5647 S23: 0.3116 REMARK 3 S31: 0.2583 S32: 0.1503 S33: 0.0146 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JANUARY 10, 2014 REMARK 200 DATA SCALING SOFTWARE : XDS JANUARY 10, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75788 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: MODEL FROM AN ISOMORPHOUS CRYSTAL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80 MM NACL, 24 MM KCL, 5 MM MGCL2, 40 REMARK 280 MM NACACODYLATE, 17% MPD, 8 MM SPERMINE-4HCL, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 66.12500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G A -4 REMARK 465 G A 1 REMARK 465 U A 2 REMARK 465 G A 3 REMARK 465 U A 4 REMARK 465 G A 5 REMARK 465 G A 83 REMARK 465 U A 103 REMARK 465 G A 104 REMARK 465 A A 105 REMARK 465 A A 106 REMARK 465 G A 107 REMARK 465 A A 207 REMARK 465 A A 208 REMARK 465 U A 235 REMARK 465 G A 236 REMARK 465 A A 237 REMARK 465 U B 0 REMARK 465 G B 1 REMARK 465 U B 2 REMARK 465 G B 3 REMARK 465 U B 4 REMARK 465 G B 5 REMARK 465 U B 101 REMARK 465 C B 102 REMARK 465 U B 103 REMARK 465 G B 104 REMARK 465 A B 105 REMARK 465 A B 106 REMARK 465 G B 107 REMARK 465 C B 139 REMARK 465 U B 152 REMARK 465 U B 235 REMARK 465 G B 236 REMARK 465 A B 237 REMARK 465 C B 261 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 U A -3 C3' C2 O4 REMARK 480 U A -2 P OP2 C5' C3' C1' N1 C4 REMARK 480 A A -1 P OP2 C4' O3' C2' O2' N9 REMARK 480 A A -1 C6 C2 C4 REMARK 480 U A 0 OP1 C3' C2' REMARK 480 G B -4 P OP2 O4' C3' O3' C2' O6 REMARK 480 G B -4 C2 C4 REMARK 480 U B -3 P C3' C2 C4 REMARK 480 U B -2 O5' C3' O2' C2 C4 REMARK 480 A B -1 P C5' C3' C2' C1' N9 C5 REMARK 480 A B -1 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N6 A A 50 O4 U A 198 2.16 REMARK 500 OP1 U A 65 N4 C A 116 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A A 138 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 G A 218 O3' - P - OP1 ANGL. DEV. = 10.1 DEGREES REMARK 500 A A 219 O3' - P - OP1 ANGL. DEV. = 9.3 DEGREES REMARK 500 U A 238 C5 - C6 - N1 ANGL. DEV. = -3.5 DEGREES REMARK 500 U A 238 N3 - C2 - O2 ANGL. DEV. = -5.6 DEGREES REMARK 500 U A 238 N3 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 U A 238 C5 - C4 - O4 ANGL. DEV. = 4.5 DEGREES REMARK 500 C B 6 C4 - C5 - C6 ANGL. DEV. = 3.1 DEGREES REMARK 500 C B 6 N1 - C2 - O2 ANGL. DEV. = 4.3 DEGREES REMARK 500 C B 6 N3 - C2 - O2 ANGL. DEV. = -7.6 DEGREES REMARK 500 C B 6 C5 - C4 - N4 ANGL. DEV. = 4.6 DEGREES REMARK 500 A B 12 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 A B 77 C2 - N3 - C4 ANGL. DEV. = 3.2 DEGREES REMARK 500 A B 77 N1 - C6 - N6 ANGL. DEV. = -4.1 DEGREES REMARK 500 C B 116 N1 - C2 - O2 ANGL. DEV. = 5.1 DEGREES REMARK 500 C B 116 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 C B 116 C2 - N1 - C1' ANGL. DEV. = 9.1 DEGREES REMARK 500 G B 194 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 U B 198 O3' - P - OP2 ANGL. DEV. = 7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 66 OP2 REMARK 620 2 A A 67 OP1 97.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 154 OP2 REMARK 620 2 G A 155 O6 98.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 66 OP2 REMARK 620 2 A B 67 OP1 93.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 411 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y1N RELATED DB: PDB DBREF1 4Y1O A -4 270 GB BA000028.3 DBREF2 4Y1O A 42632302 1840952 1840678 DBREF1 4Y1O B -4 270 GB BA000028.3 DBREF2 4Y1O B 42632302 1840952 1840678 SEQADV 4Y1O G A -4 GB 42632302 U 40952 CONFLICT SEQADV 4Y1O A A 91 GB 42632302 C 40857 CONFLICT SEQADV 4Y1O A A 92 GB 42632302 G 40856 CONFLICT SEQADV 4Y1O U A 269 GB 42632302 G 40679 CONFLICT SEQADV 4Y1O C A 270 GB 42632302 G 40678 CONFLICT SEQADV 4Y1O G B -4 GB 42632302 U 40952 CONFLICT SEQADV 4Y1O A B 91 GB 42632302 C 40857 CONFLICT SEQADV 4Y1O A B 92 GB 42632302 G 40856 CONFLICT SEQADV 4Y1O U B 269 GB 42632302 G 40679 CONFLICT SEQADV 4Y1O C B 270 GB 42632302 G 40678 CONFLICT SEQRES 1 A 275 G U U A U G U G U G C C C SEQRES 2 A 275 G G C A U G G G U G C A G SEQRES 3 A 275 U C U A U A G G G U G A G SEQRES 4 A 275 A G U C C C G A A C U G U SEQRES 5 A 275 G A A G G C A G A A G U A SEQRES 6 A 275 A C A G U U A G C C U A A SEQRES 7 A 275 C G C A A G G G U G U C C SEQRES 8 A 275 G U G G A A A C A U G G A SEQRES 9 A 275 A U C U G A A G G A A G C SEQRES 10 A 275 G G A C G G C A A A C C U SEQRES 11 A 275 U C G G U C U G A G G A A SEQRES 12 A 275 C A C G A A C U U C A U A SEQRES 13 A 275 U G A G G C U A G G U A U SEQRES 14 A 275 C A A U G G A U G A G U U SEQRES 15 A 275 U G C A U A A C A A A A C SEQRES 16 A 275 A A A G U C C U U U C U G SEQRES 17 A 275 C C A A A G U U G G U A C SEQRES 18 A 275 A G A G U A A A U G A A G SEQRES 19 A 275 C A G A U U G A U G A A G SEQRES 20 A 275 G G A A A G A C U G C A U SEQRES 21 A 275 U C U U A C C C G G G G A SEQRES 22 A 275 U C SEQRES 1 B 275 G U U A U G U G U G C C C SEQRES 2 B 275 G G C A U G G G U G C A G SEQRES 3 B 275 U C U A U A G G G U G A G SEQRES 4 B 275 A G U C C C G A A C U G U SEQRES 5 B 275 G A A G G C A G A A G U A SEQRES 6 B 275 A C A G U U A G C C U A A SEQRES 7 B 275 C G C A A G G G U G U C C SEQRES 8 B 275 G U G G A A A C A U G G A SEQRES 9 B 275 A U C U G A A G G A A G C SEQRES 10 B 275 G G A C G G C A A A C C U SEQRES 11 B 275 U C G G U C U G A G G A A SEQRES 12 B 275 C A C G A A C U U C A U A SEQRES 13 B 275 U G A G G C U A G G U A U SEQRES 14 B 275 C A A U G G A U G A G U U SEQRES 15 B 275 U G C A U A A C A A A A C SEQRES 16 B 275 A A A G U C C U U U C U G SEQRES 17 B 275 C C A A A G U U G G U A C SEQRES 18 B 275 A G A G U A A A U G A A G SEQRES 19 B 275 C A G A U U G A U G A A G SEQRES 20 B 275 G G A A A G A C U G C A U SEQRES 21 B 275 U C U U A C C C G G G G A SEQRES 22 B 275 U C HET MG A 400 1 HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET MG A 404 1 HET MG A 405 1 HET MG A 406 1 HET K A 407 1 HET MG B 400 1 HET MG B 401 1 HET MG B 402 1 HET MG B 403 1 HET MG B 404 1 HET MG B 405 1 HET MG B 406 1 HET MG B 407 1 HET MG B 408 1 HET MG B 409 1 HET MG B 410 1 HET MG B 411 1 HET K B 412 1 HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION FORMUL 3 MG 19(MG 2+) FORMUL 10 K 2(K 1+) FORMUL 24 HOH *2(H2 O) LINK OP2 U A 66 MG MG A 402 1555 1555 2.14 LINK OP1 A A 67 MG MG A 402 1555 1555 2.66 LINK OP2 A A 67 MG MG A 403 1555 1555 2.22 LINK OP2 G A 136 MG MG A 400 1555 1555 2.12 LINK OP2 C A 145 MG MG A 406 1555 1555 2.96 LINK OP2 A A 154 MG MG A 405 1555 1555 2.48 LINK O6 G A 155 MG MG A 405 1555 1555 2.98 LINK O6 G B 28 MG MG B 400 1555 1555 2.62 LINK OP2 G B 32 MG MG B 411 1555 1555 2.64 LINK O6 G B 58 MG MG B 410 1555 1555 2.72 LINK OP2 U B 66 MG MG B 401 1555 1555 2.27 LINK OP1 A B 67 MG MG B 401 1555 1555 2.51 LINK OP2 A B 67 MG MG B 402 1555 1555 2.29 LINK OP2 G B 136 MG MG B 404 1555 1555 2.55 LINK OP2 A B 154 MG MG B 405 1555 1555 2.92 LINK OP1 A B 222 MG MG B 409 1555 1555 2.57 SITE 1 AC1 1 G A 136 SITE 1 AC2 2 U A 66 A A 67 SITE 1 AC3 3 A A 67 G A 68 C A 116 SITE 1 AC4 2 G A 239 A A 240 SITE 1 AC5 3 A A 154 G A 155 U A 221 SITE 1 AC6 2 G A 136 C A 145 SITE 1 AC7 1 G B 28 SITE 1 AC8 2 U B 66 A B 67 SITE 1 AC9 2 A B 67 G B 68 SITE 1 AD1 1 G B 133 SITE 1 AD2 2 G B 135 G B 136 SITE 1 AD3 3 A B 154 G B 155 G B 156 SITE 1 AD4 2 C B 201 U B 202 SITE 1 AD5 2 G B 156 A B 181 SITE 1 AD6 2 G B 15 U B 255 SITE 1 AD7 3 A A 223 U B 221 A B 222 SITE 1 AD8 1 G B 58 SITE 1 AD9 1 G B 32 CRYST1 84.345 132.250 84.561 90.00 91.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011856 0.000000 0.000386 0.00000 SCALE2 0.000000 0.007561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011832 0.00000